AMCG00007683 (LOC107739093,LOC107712505)


Basic Information

Item Value
gene id AMCG00007683
gene name LOC107739093,LOC107712505
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 25653720 ~ 25658719 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007683
GATAAAAACGACATATCCCAGAAGCCACTGGGGCTACTTCCGTGCACCGGTGACATAGCGGACTGTAAACAAAGCTTCTACTTTCTGTTTTGGTGATATTTTGTGTTGACGTTTTCTTCCAACACATGctattaatgttaatttacGTTTATTCCTGGCAGTGTGATAACGTTAAATACATTACACCCAGTTTACCGTGTGTAATTTAACGAGCTAATCCAAATACAGTACACGAATTGAAGGTTCAGCTGTAGGAAATCGTTTTGTGTGCAGACTCCCGGTCGCTGTCTTGCAAGtgtagaaacaaaacaaaaatggcccTTCCAGAGTGGCGAATTTCATTGAAGTTAATGGACCAGCCCTCGGTTCCCAAGTCGGTGCTGCAGTTTCCCGAGCCAGAGCCCGGAGAGATGGCACCAGGGGGGTACCGGGTCGCCACTCTCAAACAGCTGGTGGCGGCCCAGTTACCCGATTACATCCCCGATCCCGAACTCATAGAGCTGGTGTATTGTGGCAGGAGGCTAAAAGATGAGCAGACCCTGGAGTTCTACGGGATTCGGCCAGGATCGACGGTCCATATCCTAAAGAAATCCTGGCCAGAACCAGAAGTCAAATCTGGAGTGCTGCAAGACAAAGATCTTTTTATGCTGTTTACTGACCCCAACATGCTAGATACGCTGATCGCGTCTCACCCATCACTGGTCAACGCTATCGTCCTGGTTTTACACTCCGTGGCTGGCAGTGTTCCTCCTCCACAGAGTGCCAGCACGTCCCGCAATGTCTCTGCCAGCTCCTACAGCGACATGCCGGGAGGATTTCTTTTTGAAGGCATGTCTGATGATGAAGAGGATTTCCAACCAGGCAACCGTGCCACCCCTTCAACCAGTGCAGGAGCTGCTGGCACACGCCCGGCTACCCTGGGCTACAGTGGCGCCGTGGGCCCTCGGCCAATCACACAGAGCGAGCTGGCCACTGCTCTCGCCCTCGCCAGCACTCCCGAGAGCAGCGCAGTCACACCCACCACCGGCAATCCGGGAAGCTCCTCCGGGGCCTCACCCGTGATGGGCTCTTCTGGAATGCCTGCTGGGACCCCCATCACCAACGACATCTTCACCCAGGCGCTGCAGCAGGCACTGCAGGTGTCCAGCCTCTCAAGCCTACAGAGCCAGTGGCAGTCTCAGTTACAGCAGTTGCGGGACATGGGCATCCGAGACGAGGAGCTGATCCTGCGGGCTCTGCAGGCCACAGGGGGGGATATCCAGGCGGCACTGGAGCTCATCTTTGCAGGGGGCGCCCCATGAGCTGACAGAGGGTTTGAGGACAAGCAAGGACAATTGTTCAATATCACTTGACTATAAGCATCTGCTTATAAGTGATAGAAATGAATCCACTGATGAGAAGGAATAACGGAAGGAATATTGTAACCAGGCCCGGCCTTTTCCCGGCCTTAAAAACATCCGTGCCAGGAGGGTAGAACTTTTCATCAATGAGAAAGTAATTGATGAGAAACTCTTTTAACTGATAAAATATAAACtagaaataaaagcattttggaaatatgtttatcttttgtgttttaagaCCGCTTtaacaaaaaagttttttttatttaaacctctTGCATGCTTCAGGAGTCtacatcaaataattaaaaacagaataggTTAGTGGTATTATCCTGTCTTCTATTATTGACATATGCAAAGGATACATTATTGTATGTACAGAACACATTATATAAAGAATTGAAGTGTATTGGTTTGTGAGAACAtgcagtcttgttctcttgcaagttctttatttttcttcagttcgGATTAACATTAACTCCCCTTCCAGAGTGTCAGTATCAGTAGTGTATCAGTCCTGAGTATATATCATCATTAAAGTGTTATAGAGGGCAGTGGCATTTGTATGGAACAATCTTTGGCTCATATGATCAGTGTATAGATGTTCTTGTATACAGTCTGCCATATTACTATGCTACAATTGTGTTTTTACCATGGAACaccatgattaaaaaaataaaaaaagtttttgttccttgtttttATAATGCTACACTATACACTTGACCATATCttaccatgtttttaccatggtacaACCAC

Function

NR:

description
PREDICTED: ubiquitin-like protein 7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007683 True 2111 mRNA 0.47 9 25653720 25658719

Neighbor

gene id symbol gene type direction distance location
AMCG00007676 LOC106587228 coding downstream 199317 25390189 ~ 25454403 (-)
AMCG00007675 chrna5,LOC106587222,LOC108440259,LOC106562132 coding downstream 273325 25365037 ~ 25380395 (-)
AMCG00007679 NA coding downstream 291323 25359779 ~ 25362397 (-)
AMCG00007678 NA coding downstream 297836 25339362 ~ 25355884 (-)
AMCG00007677 NA coding downstream 318914 25323088 ~ 25334806 (-)
AMCG00007689 NA coding upstream 13886 25672605 ~ 25681857 (-)
AMCG00007688 NA coding upstream 204303 25863022 ~ 25895601 (-)
AMCG00007693 NA coding upstream 477933 26136652 ~ 26161514 (-)
AMCG00007694 hmg20a,LOC102798875 coding upstream 604269 26262988 ~ 26272450 (-)
AMCG00007695 LOC107560004,LOC107562294,LOC107727415,LOC107673268 coding upstream 820312 26479031 ~ 26480878 (-)
G25446 NA non-coding downstream 201698 25451763 ~ 25452022 (-)
G25421 NA non-coding downstream 397359 25252716 ~ 25256361 (-)
G25415 LOC108275329,LOC103046663,LOC108436939,LOC105912564,LOC107696286,LOC103375935,LOC106584709,LOC104942717,LOC107753195 non-coding downstream 406341 25207774 ~ 25247379 (-)
G25387 NA non-coding downstream 664666 24988845 ~ 24989054 (-)
G25375 NA non-coding downstream 671581 24981934 ~ 24982139 (-)
G25615 NA non-coding upstream 1340587 26999306 ~ 26999546 (-)
G25617 NA non-coding upstream 1370252 27028971 ~ 27029294 (-)
G25620 NA non-coding upstream 1411167 27069886 ~ 27070099 (-)
G25655 NA non-coding upstream 1595510 27254229 ~ 27257033 (-)
G25697 NA non-coding upstream 1695249 27353968 ~ 27355254 (-)
AMCG00007684 shf,LOC108430988 other downstream 22128 25630792 ~ 25631592 (-)
G25422 NA other downstream 388769 25264332 ~ 25264951 (-)
AMCG00007637 NA other downstream 1372156 24262690 ~ 24281564 (-)
G25026 NA other downstream 1681055 23971671 ~ 23972665 (-)
AMCG00007594 zfand6,zfand5,zfand5a,LOC105015049 other downstream 2233417 23406928 ~ 23420303 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other upstream 395045 26053764 ~ 26070848 (-)
AMCG00007704 NA other upstream 1699012 27357731 ~ 27370519 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other upstream 3235974 28894693 ~ 28921123 (-)
AMCG00007768 NA other upstream 3342330 29001049 ~ 29013947 (-)
AMCG00007817 NA other upstream 5533291 31192010 ~ 31246649 (-)

Expression


Co-expression Network