AMCG00007690 (LOC107583870,LOC107742881)


Basic Information

Item Value
gene id AMCG00007690
gene name LOC107583870,LOC107742881
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 26096726 ~ 26115608 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007690
ACGTCAAACTGTCATGGGACTTATTACCACAGTCTCTCTGCAAAACACTTGGAGGCAGGACGAGGGGAACCTGGACAGGGACCTAGACCAGCGCTTCTTCTGCAGCAACCGTGCAACCATGTGGACCTAATGATCTGCTCTGGGGAACCCAAGCCAGGCGCTATCGAACCGGTCCAGAGCTCCAGTCCCGGTCATTAAACTGAAACATGTGTTTGATGGATACAACACGGCAACGTTGTTTGGATAAAAGCGGCAGTAAAAGGATCTTCATTCTTCTGATAAAACTTCAAAGACTAAAGAAATTATGATGAGCAGTAAACAGACATTGAGCTACATGGATCCTGTGGTCCACGGCAAGGTGCCCAGACTAGAGAAAGGTGTAGGTCATATGGTGTCAGCGGGCCTTTGCAAACCAGGAAACATGCAAAAGTATTCCCTTGAGGATCCCCTAAACTATAGTGGGACTTACTTTACCTATTGCCTAACTGGGCAGGATGTGACCGAGCTTCCTCCTCCTTGGAGTCCCTCAGGTTCATGTTTGCAAAAAGGAAGAAATCCTGTTATTCACCCTTTAAGTGCTGAAAGTGCATTACCAAACCGATTTGTATATAGGTCAGAAGACCTTGGCTTTTCCACAGAAAACAACCCCCCCGTGGCTGTACAGGACATGATtgcagcaaaagaaaaatgtgcgTATTTTGGtaaaagtcagcaaaatgtaAAGCATAACCCTGGTGCACCATCAATCCACACTCCAGTGGCTGTTAGAAAGTTAGCTGTTGGAGGTACCACTGTGTCCTCTCAACCTGAAAACTCTGTTGGCTTGGCTATTCCTAAACCTATTTATGGACACGGTCCTTGCTGTACTGACCATGGATGCAAATCAAGAGCCTGCTACATTGAACGTACGACTGACCAAGTCCAGCACAGTTCCTATGAGGAGGAATGGCGACCAGTTTCAGGGCTACATTATGGTCCCATGTTTCCCATGGAGAAACGAGAAGAATTATTACAACAAAGGGTCCTTCAACTTGAGCAGAATACGGGCAGGAGGTTTCCACCAAAAGAAGCAAGTCCAGAAGGTTTCCGTACAATTAGACCAGCTGAAGCTGTAAGGCTGCCAACCTTCATTGAGCCAGACTACCGTCGCTTGCCATATGACAATATACCCCGGTCATACTCTAATCCTTCCAAGCACCCTTTACAATTTCCCCCCAAGATGTATCATGGTATCTTGCCATCTTCTTCAAGGAATTATGAAGACATGCAGAAGGTACCTCTTTCTCACTCTCAAATTCCACCAAATGTGTACCAAGAGAGGTCTCCTGTTTCCAGCTACCCCCAACTACCTCAGAGGCATGTATTTTACTATCCTCAGGAAAATGTGGATCTTGAGAAAGGTGCAGCTTACAAAGACCTCAGGGAACAGCGAATGGAGGAAGCTTCCTCCAATCTTAATAAGCAGAGGACCCAAAATGTAGCAGAACAGTATCTAGTGCCCCAGCCTTTCTATAGTGAGGTTCCGCTTCCATACCACATGATTTCCACAAGTGTTCCATTCCATAGAGACTACGATCTTGCACCCTATTCAGTATACAAAATGCAGCCCAGCGCAGGGCGTAAGAGGGGTTTCCCTGAAGAATCTGGGTCTCCCCTTCAAATGCACCTTACTGATCAACCTATGGATTACTCCTCACAAAAAGTCCAGATGACCTCTCCCTCAAGGGAGCTTAATAGGCATCGGCGTACTCCTGGGGCTTTTCATCCGGTGCATGCTCGCTCGGTGCATGTTAACCCAGAACATGTGTCTTTTGAGAAACAATTGGTTGTAAATTCTAGAACAGAAAGCGAACCTTTAAGTCCCAAAAGAGGCATTCCCTACTCTGTAATCGAACACCATAAGGAAATGACTCTTCCAGTAGGCCCAAATACTGATAGCGGAGCAGGTCGTGTCACCGCTTCTGACAACCGAAGTTCTAAAACAAAAGCCATGGAGGACTCGGAAAAATCCATTGTAATTAATTCAACCCCTACAGAACCAAGTGATGATTTATACGAAGTTGCAGTTTCTAACAAACGACATGAAAGAAAGACATTGCACAGACATGATGCAGATAAGCTCCAACCTCCTCGTTCACCTCCCATGCCTGtaattaacaatgtttttagcTTGGCTCCTTACAAAGCGTACCTAGAAGCCTCAGGAATGCTGCCTATGCCAAACAGTGTAAAAAGTGTGTCACATTATTGTCCACAAACATCTGACCAACAAAGGCTTAAGAATGATCCCCAACAAACAACATCCACACACGGATTGAGTCCATCAATGTGTGGAAGATCTGAATACAAGAAAGAATTGGAGGACATTGAGACAGCTGACTATTTAAATCCAGAGCAGAACACACTACAGGCTGATGAGAACAAAAATGATAACCTGCAGCAAGACCTCAAGGAAGAGGGTAATGCAGATTTGATGAGTTCACCAAACTGTCTTCATAATATCAAAGTCCTTGATCTCCGTGTGAAAAAGACTAGTGATTCTGGCAGCCAGGCCCAAACGTTAACAGACAGTTCATCAGGAATTCATTCAAACACCTCTGGGACGAATGGCAACAATGGTCATGCATCAGGGACTGCTAATCTTGATGGTTCCAGAGGTGTCAGCATTACCACTTTCAcgcaaaataaatatcacattcTTACATTGCCACCTCCAAATCCTGAAACACTACCTCATAAACCCAGTGAACCAAAAATAAGTGCCTTTAAGCAACTTTCTGCCCAGTGTCTCAAACTGCCCACCTTTAAGATTATCCTGCCAGACACCCATCTACCTATCAAGCCTATTCCTTCAAGTGGTCAAGAATTACTATCTGCCTCTACGGAGTCCAAGAGCAATAATAAGACTTATAAACACACTCTGCCTTATTTTATGGAACTTCATCAGTCTCTCTGCAGCCAAATTGCCAACTCGATTACCCACACCCCAGAAGAAGAATTAAGAATATGGTTGACAAAGACAGAGGGAAAGACTGAGTCTGGGTCACCCCCCACCAAGAGCCAGAATATCTCCTCTATTATGGGTGCCATAGGGAGGGAAGCATGGCTGAAATTCAAGGAGAATGCTGTGGCACTCCGAAGCATCCTTGACCAGTTGGAGAACTATATTTCTGAGAAGCAGTGCCCATTCCCTCATGTAATGCGGACAGGGACTATTTTCATTCCAATGCTAGTGGTGAAGGAGTCTCTCTTTCCTCAAGTCCCTGGTTCCTCTATTGACCAGGTTCTGCAGGAACATCGTGTGGAACTCCGGCCCACTACCCTTTCCGAAGAAAGGCTTCTAACGCAGCTTCAGAAACGTGGCTGTTCTTCCAAGCTTAGGCGACTTCTATCCCTCAAGCAGCTCCCAGACATTTACCCTGATGTGCTCAACCTGTACTACCATTCCTGTGTCAGAGAGCACCTAGACCCTTTTGCTGCGAGTTGATTCCACTTCATCTGCTGGCCTCCAAATCTCAGCCCAgGGGAAGAGCCCAACACCACTGTGAAAACTGAGAAGGAAGAACATCCAGAAGAGACCTTCCCCCTGTCTAAGAGCAGGGCAAGTTTCCAAACTATGCTACGAAAACATGGATCAGAGTGCAAGGGGGGCTTAATGGCATTGAGAAGAGGCATTTGCTTCAAGACTCAAAGAAGGAAAGGCAGAAGAAAAAGTGCCTTAAACAGAACCTTTTTGGGGAAGGATAATTTAGGACAGATTGTCACATTCTCAGCTAATTTAGAAAATTCAAGTCTGGAAAACTCTGTTGAACAGGATTGGGAAAGGCCTGAAAACTGTCTGGATGGTGACTGCAACAAGCTTGATGTTAAGATTGAGGATGTTTCTTCTGAGGTGGTAGAGATCACAAAGAAGGAGCCAGAAAGCAGCTCTCTTTGGGGGCCAATTACTTCAGATCTTTCCTCTGAGAATAGTGATGCTGAGATGGATGAAACCTTGATGGACCAAGGCAAAGCCTCTAAGTTAGCGAGGGGACTGAAACAAAAAGAGATGGCACCCAGTGGGGAAACCAAACCACAGGTTTCCCTTTTTTCGAAGTGCCACTCCAGTATGGTACTGAAGTTAAACGCTCTATTCAAAAAGAATCCCATTGTAAGAGACCGGACTTCTGAAATACAGTTGCAGCCTGCCAACTCGATAACGGAGGCAGGCAGAGAAGATAATGAGCGTGTGAAGGGTACGCCTAGAAGACTCCATTCACGAGGGTCACAGCAGAGGCAGAGGGTGCCTGGAATTGCTGAAGCTCTGCGTCCTACACGTAGCACCTCAAAGGTCTTGCATCTTCGCAGTTCAATGGTGCAAATCAAGTTCCGGCGCTACCTAACGGTGCAGCGCACTGTACTGCGGCACAGTGCACAGCGGAGGAGGAAAAGGGTGGTGCGGTCAGCTGTCAGAAGGGTCAGGCAAGCCATGAAAACCAGCTATCCTGAGCTAGTAGGGAAGCGTATCCGACACCTTTATGAGGAAAATGACAAGTCAGAGGTGTGGTACCGTGGGGTGGTGATCCGCGTACACGAGCCACACCCAAACCCCTTAAAAACTGTTTATGAGGTGAAGTATGATAGTGAGCCAGAGTGGCAGTACTACTTAGAGCTTCTTCTGGATTACAAGAAAGGATGGCTCAAACTGGAGGACTGAGGGACTctggatttgtgtgtgtctgtgtgtgacaaTGTTCTTGTGAATATTGGTGGAACGTTAGTTAAATGgtactgttttttgtattgcctGTTCACTGTGTTCATCCTGAAGATCAGTCTCAAACTGGGGCAAGCAAAATAGCAAGTCTGAATCAGTAGGTTTTCTAAAACCCTTATACATATGTCCTAGATCTAAGGAAATACAAATGGTGTACAAAATGACAGTGTTTCATTAGCTGtgcaaaaatgctttaaagaaaCTCATGATAGTTATTGTAAATAGATTAAATTCCCCAAAACATTCCTTTCTCAGAAACTCAGACAAAACTCTATTTAAATGCCTTACAAACATTCATAAAACTCGTATATGCAAGTCAATAATTTGAATGAGCTTCTcaattcagttaattatttttcccTTATGAGGGACCACACAGTGATCTAATGTTGGACAAAATGTCTGTCTTCTCTGTGCAAATCTCGACTGCAAGGATTGAAATGTGAACAAgatagtgttttttttcaagACCGAGGGTTTCGATCTCAGTCATTAAGATACATTCTCAATGTGGGTGAGCACTGTATagtcttaaatattttatatgagAATTTCACTGTGACTCAGAACCAcctttgcatattttaattgaaatcaaaaCAGGAAACGGTATGAAGTATACTCGGGTGTTTCTGGCATAGTATAACttgaaacattttgatttaaaagatACATGTATAAGCTCAAAGATGTGCAAGCAGGAAAGGTTTTGGAGATGCCCAAGAATTTCTAGGTTTAGTTTTTGCTTCCATACTACATTATGTAGAGCTACCAATTGGCCCAAATACCTCTCAAATCCTtataatggggggggggaaacttAAAGGGATAGTGGCCACAAAGCTTTTGGTATTTTCAGTGTGACTGCACTGTAGGTAGCTGGTTATGTTATATCTTCTATATTCTCCCACTGATGAATTTAGAGCTTGAGCAAGCATGCATTCGCTGCACAGAAACAAATGTGACTCAACAGGTTTGTGAGCtggtttttaataatttcacagTAACAATGTAAACCTGCTACTTCACAAGATTGGGGGTTCTCTGCTTATTTATACCTGTAACAACATGTTTGGAGGcatttattaaactgaaaattattttgtagtttGGATTTGATTTGGAAGGTCATTGTGGAAATATCACTGGATGCAGGAAGAAGTTTTCAACTACGAGTCCAAGCGGCACCAACTAATGATGcccattaaatatttttattattttgggggggattGGATGGcgttatattaataaatatcttattctctcattcattcataatttcatTTCCAATATTGGTGTTATTCCCATAGGGAGGGTCTCTTGTCTGTGTACGCCAGTGGTAGGCAACCAGACTCCTGGAGGACTGCAATATCTTCCGATTTTGGTTCCAgctgaatatattatttgttgaaACTACATATTGTGCAtctaaatgattttattttctgtttgaataTGAACACATCATTACAGTATGTTTTAAATTCATGTCCGAGAGGTTTTCATCATTGCACATCACTTAAATCATGTTTAGTACCAATATCTCTAGGGCAGAACAGGAGCCATAAGCCATAAGTGGCTTATTGCCACATGCACGGAGGAGTTTTATATGGCTTCTTCCCTGTTTTTTAAGAGTTCTAATTCATGGTCAATGGAACTATTCTAGcaccatttaaataaaagctgGGGCAAAGTAGAGGCTAGATAATAAAACCATGTTATGGCTGAACCACTCTGTAGTCTAAGCATTACTTTACTATTTTTGCTCCTTGCTGCTGtttgattaattgaaatgtcTACTCCATTTCATCATTGATTGACACTAAAGGTCTTTTGGACATCCATGAAACTAAAGAGTCTATATTGTCCTGAACTCGAGCAAACAAGCTGGCTTTGACCTACAGGactaataaaagtaataaaatcatCCTGCCTTACTAAAATCCAATTACCTGCAGCAAGCTGAGAATTAGCTTGAACTGCTATCAAGGTGTAACCATGCATCAATAAAGTTTGAAATTTTGGATATTGTTAAGACAGCATATGGTTGTCATTGTATGAAAAGCTTCCTTGAAATAGTGTCCAAAAGACCTTTTAAGCATTGTACAATCAACATGAGGacaatagtgtttttttttaactgaagtaAATCGGGGAACCTATCTTGCATGTGAGCTTTACTATTAACAAgtcatatcatttttttttttttagcatcaGTGTAACAATGCAGTTGAAAAGTCAatctgagaaaatgtattagtaTGCAACATTGTTTTACTTGATATTGAGcaaatgtgtaaaaacaaataaaaaaaactgaagcatATCTGAAAATGACTGAATACTTGTtgaaagacagagggagaatCTTGTTAACATCAATCagtgcagtgcattctgggcatCTCTGGTTTAATTGTCAATATTATTTCCACCTCcacttttatacttttaaattattgttgaGGTTTTAAGCTTTGTATTTGTTCTCCTCTCTCaatcatgtattgttttataaattgtttaagGCGGTCGCAAGAAGAAAAATCCTTTGATACTGCGATTGTGCTTGTAAAATATACTTCCTTAGCTAATCATTTTGTAagggtttaaaataaagtttttgaaTATACATACA

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC107583870

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007690 True 7400 mRNA 0.42 5 26096726 26115608

Neighbor

gene id symbol gene type direction distance location
AMCG00007691 ppcdc coding upstream 13305 26070759 ~ 26083421 (+)
AMCG00007686 loxl1 coding upstream 60362 26019814 ~ 26036364 (+)
AMCG00007685 NA coding upstream 388588 25698223 ~ 25708138 (+)
AMCG00007682 LOC102220226,LOC108442892 coding upstream 423575 25535554 ~ 25673151 (+)
AMCG00007681 NA coding upstream 561741 25534509 ~ 25534985 (+)
AMCG00007692 NA coding downstream 2488 26118096 ~ 26131010 (+)
AMCG00007696 NA coding downstream 1043883 27159491 ~ 27179372 (+)
AMCG00007698 NA coding downstream 1099162 27214770 ~ 27226777 (+)
AMCG00007697 ptpn9,ptpn9a,LOC106573036 coding downstream 1120386 27235994 ~ 27253888 (+)
AMCG00007700 sin3a coding downstream 1146897 27262505 ~ 27280545 (+)
G25531 NA non-coding upstream 35480 26053701 ~ 26061246 (+)
G25445 NA non-coding upstream 644933 25451533 ~ 25451793 (+)
G25405 NA non-coding upstream 775701 25315787 ~ 25321025 (+)
G25367 NA non-coding upstream 1143398 24953125 ~ 24953328 (+)
G25302 NA non-coding upstream 1155146 24934479 ~ 24941580 (+)
G25561 NA non-coding downstream 18753 26134361 ~ 26134577 (+)
G25562 NA non-coding downstream 21159 26136767 ~ 26142288 (+)
G25574 NA non-coding downstream 147219 26262827 ~ 26270720 (+)
G25588 NA non-coding downstream 197755 26313363 ~ 26313565 (+)
G25631 NA non-coding downstream 1075561 27191169 ~ 27191379 (+)
AMCG00007640 NA other upstream 1597076 24476487 ~ 24499650 (+)
AMCG00007631 NA other upstream 1902245 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 2426647 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 2903205 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 2957205 23133811 ~ 23139521 (+)
G25822 NA other downstream 1968214 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 2323036 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 2566563 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 2784450 28900058 ~ 28911566 (+)
AMCG00007769 acsbg1 other downstream 2887487 29003095 ~ 29006379 (+)

Expression


Co-expression Network