AMCG00007691 (ppcdc)


Basic Information

Item Value
gene id AMCG00007691
gene name ppcdc
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 26070759 ~ 26083421 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007691
GCAAAGCCGAGCTTTGTCGGCCTGAGGCGTTAATCGCTACTGATTGTATTAAGCGCTTTAAACACAGTTTCACATTCAATCAAGTTCCGGAGAGCGCATGCGCGCTGGCCGAGAGGAGGCTGTGAGGGGCGAAGCGGACATGCAGCAGCCTGCGGGGAGTGAGCATAGCTTCCGGGTACTGGTAGGGGTTACTGGAAGTGTGGCAGCCGTGAAAATACCCCTGCTGGTCAGCAAACTTCTCGAATTACCCGGGGTGGATGTACGAGTGGTTACCACAGACCACGCAAAGCATTTCTACAATCCTGATGAACTTTCAGTCCAAGTCTACAGTGACAAGGACGAATGGGAGCTATGGAAGCAGCGATCTGATCCTGTTCTGCACATTGAACTGAGACGTTGGGCCGATCTCCTGGTGATTGCTCCTCTCGATGCCAACACTCTGGGAAAGATTGCCACTGGGATTTGTGACAATCTCCTGACATGTGTGGTCCGGGCCTGGGATCTAAGGAGACCCCTTCTGTTTTGCCCAGCAATGAACACGGCAATGTGGGAGCACCCAATCACAGCCAGACAGGTCAAAGTACTGAAGGAATTTGGATATGTTGAAGTTCCTTGCATTTCCAAAAGGCTCGTCTGTGGAGATGAAGGTAAAGGGGCCATGGCAGAACCCTCAACAATTACAGACATGGTCAAAGAATACATCCAGAAGTCTAGCTCTTCATAGCAGATATCCGTGACAGGGTAGTTTCTATATGTTTAGTTCTGTCCGATGTGATAGTGGTCCTTGTTGGATGAATGTGTGACCTTGATTTTGAATGCCTAGACTGATACCTTTCTACTCACTCTATCTTAGACCTGTAAAGTTAGTGCTAAAATCTTCATCCATTGTGTGGTTTGGACCATACTtactacagttttatttttagttttgttctaatGAACGGTGAGTCACTAGGGAaacttcaattattttttgattttcattgtatCCCACCCATTTCTGAAATCCAGCTTACAAGGAATCCCAGTTACAAGGAAATTCACTCCCAGTCTAATGTGAACTTCAACACATACTGAAGGGGCAGACGATTGCAACATTAGATAGTGGAGTTAAGGAGGAACACTGAAGGCCTGCAGCCATTCATTGCTTTATGTAAAATGGGTAATAAGAGTTTTGCAGAGCTCATCTGGGTGCTTTGGGTTTTTTCTTATAGGACCTTTTCTTCTATcaacattgaaatacaaaagcaaaacaattaacagaAAATTACAACAGACAGATTGCAGTAATCCTCCAAAAGATGTTCATGTGTACAGAAATGTAACATACTACTCTTtctagtgttttattttattacaaaacactCAGCTATGAATATAACTGTAACGGTTAGATGGGAACACAGTGGGGTTGGGTTCTTAGCCATCATTATTAAATCAACTGGTatatgcacaaaataatataagttATATCCTTAAAAATAGcctaacaaaagaaaagcaaattaaaccaTCGCTCTGAGGCTCAATACTGGTTGTGGTGGTGTGGTAATTTACCTGAAAGCAATGAGCCATGGTGGGTTAAATAAGGTGAGGCACAGCCGTGGTGAGATCACTGGTTGCCGTCTGTATCAGCAAGACAGGTTTGTCCTGCACCTAAATGAGACACAGCCGCCGACACTGATGAGACAATCCAGCCCTCACCATCAACTGTGTCGTGACAGGGCCAACCTGTCACAATACAGGGATTGCATGTGGGTTTAATGACAATATATGGAGAGAATGtgaaaagcattttatattaaaatgttcagcttgtacaggttttgttttgtttttatgtagcCTTGATTGTTTGTACTACAGTTCTTGAAGTCATTACCTGATGTCTTGCATCCCTGGCATAATTTATCTTACAATATGGTGTTAGAATTCATTATTGATGAGTGTTTTGCAATTTTAAAGGGTTGTCATGTgaacaataaatattattccACTTAAACGGAATAACAGAgataaaaa

Function

symbol description
ppcdc Predicted to enable FMN binding activity and phosphopantothenoylcysteine decarboxylase activity. Predicted to be involved in coenzyme A biosynthetic process. Predicted to be part of phosphopantothenoylcysteine decarboxylase complex. Orthologous to human PPCDC (phosphopantothenoylcysteine decarboxylase).

NR:

description
PREDICTED: phosphopantothenoylcysteine decarboxylase

GO: NA

KEGG:

id description
K01598 PPCDC, coaC; phosphopantothenoylcysteine decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007691 True 2022 mRNA 0.42 6 26070759 26083421

Neighbor

gene id symbol gene type direction distance location
AMCG00007686 loxl1 coding upstream 34395 26019814 ~ 26036364 (+)
AMCG00007685 NA coding upstream 362621 25698223 ~ 25708138 (+)
AMCG00007682 LOC102220226,LOC108442892 coding upstream 397608 25535554 ~ 25673151 (+)
AMCG00007681 NA coding upstream 535774 25534509 ~ 25534985 (+)
AMCG00007680 LOC107661444,LOC108436947,LOC107696278 coding upstream 603523 25454680 ~ 25467236 (+)
AMCG00007690 LOC107583870,LOC107742881 coding downstream 13305 26096726 ~ 26115608 (+)
AMCG00007692 NA coding downstream 34675 26118096 ~ 26131010 (+)
AMCG00007696 NA coding downstream 1076070 27159491 ~ 27179372 (+)
AMCG00007698 NA coding downstream 1131349 27214770 ~ 27226777 (+)
AMCG00007697 ptpn9,ptpn9a,LOC106573036 coding downstream 1152573 27235994 ~ 27253888 (+)
G25531 NA non-coding upstream 9513 26053701 ~ 26061246 (+)
G25445 NA non-coding upstream 618966 25451533 ~ 25451793 (+)
G25405 NA non-coding upstream 749734 25315787 ~ 25321025 (+)
G25367 NA non-coding upstream 1117431 24953125 ~ 24953328 (+)
G25302 NA non-coding upstream 1129179 24934479 ~ 24941580 (+)
G25561 NA non-coding downstream 50940 26134361 ~ 26134577 (+)
G25562 NA non-coding downstream 53346 26136767 ~ 26142288 (+)
G25574 NA non-coding downstream 179406 26262827 ~ 26270720 (+)
G25588 NA non-coding downstream 229942 26313363 ~ 26313565 (+)
G25631 NA non-coding downstream 1107748 27191169 ~ 27191379 (+)
AMCG00007640 NA other upstream 1571109 24476487 ~ 24499650 (+)
AMCG00007631 NA other upstream 1876278 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 2400680 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 2877238 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 2931238 23133811 ~ 23139521 (+)
G25822 NA other downstream 2000401 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 2355223 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 2598750 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 2816637 28900058 ~ 28911566 (+)
AMCG00007769 acsbg1 other downstream 2919674 29003095 ~ 29006379 (+)

Expression


Co-expression Network