AMCG00007695 (LOC107560004,LOC107562294,LOC107727415,LOC107673268)


Basic Information

Item Value
gene id AMCG00007695
gene name LOC107560004,LOC107562294,LOC107727415,LOC107673268
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 26479031 ~ 26480878 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007695
ATGGTGGCTGGGGAGGCTAGCGTGCACAGCTCCCTGGTGGCTTGCTGGCAGCCCATCCTGCTCTTGATGCTGGGCACTGTCCTGTCAGGCTCAGCCACAGGTTGTCCAGCTCGCTGTGAGTGCAATGGCCAGGAGCGCTCAGTGCTGTGCCACCGCAAGAGGCTAATAGCTGTGCCAGAGGGCATCCCCACAGAGACACGCCTTCTGGACCTCAGCAAGAACCGCATCAAGATCATCAACCCCGATGAGTTTGCCCCCTACCCCCACCTTGAGGAACTGGAACTGAATGAGAATGTGATCTCCACAATCGAGCCGGGCGCCTTCAACAACCTCTACGGATTGCGGACGTTGGGGCTGCGCAGCAACAAGCTGAAGCTCATTCAGCTAGGGGTCTTCACAGGACTCAGCAACCTGACCCAACTGGACATAAGTGAGAACAAGATAGTTATCCTTCTGGACTACATGTTTCAGGACCTTTACAACCTTAAGGCCCTGGAAGTCGGAGACAATGACCTGGTGTTCATCTCCCACCGTGCTTTTCATGGACTCAACAGTTTGGAACAACTCACCTTGGAGAAGTGCAATCTCACCTCCATCCCTACTGAGGCATTCACTCACCTCCACAGTCTGATAGTACTCCAGCTACGGCACCTCAATATTAACATTGTTAGGGATTATTCTTTCAAGCAGCTCTACCGGCTAAAAATTCTTGAGATCACTCATTGGCCGTTTCTGGACACTATGACCTCCAACTGCCTCTACGGACTTAACTTGACCTCCCTGACCATCACTCACTGCAACCTGACCACCATTCCTTATGTGGCTATCCGCCATCTTGTCTACCTGCGCTTCCTGAACTTGTCCTTTAACCCCATCCACACCGTGGAAGGAGGCAAGCTCCATGACTTGCTTCGACTGCAGGAGTTTCACCTCGTTGGAGGTCGACTGGTTACAATAGAGCCATATTCTTTTAGGGGCCTAAACTACTTGCGGATCCTCAATGTCTCAAGCAATTCCTTAACCACCCTGGAAGAGACTGCCTTTCACTCTGTAGGCAACCTGGAGACGCTGATCCTGTATGACAACCCTCTGGCTTGCGACTGTCGCCTACTTTGGGTGTTTCGTCGCCGTTGGAGGCTCAACTTCAATAGGCAGCAACCCACATGTGCGATGCCCGAGTTTGTCCAAGGCAAGGAGTTTAAAGACTTTCCAGATGTTCTCCAGCCCAACTATTTCACGTGCCGTAAATCAAGGATCCGTGACCGCAAGGCCCAGCAAAAGTTTGTCGACGAGGGGACCACAATTCATTTTGTATGCCAGGCAGATGGAGACCCAGCCCCTGTAATAATGTGGTTGTCCCCGCGTAAGCACCTCATCACAACGAAGACCATTGGCCGACTGTCAGTGTTTCCAGACGGAACCCTGGAAGTCCGTTATGCCCAGATCCAGGACAATGGCACATATGTGTGCATTGCAAGCAACGCGGGTGGAAATGATACTGCACTGGCCCATTTGCACGTTCGTAGCTACTCACCAGATTGGCCTCATCAGCCCAATAAAACCCTGGCCTTCATCTCTAATCAACCCAATGACAACGGTGCAAACGGAACCCGTGCCACGGTCCCCTTTCCCTTTGACATCAAAACGTTGATTATTGCCACCACTATGGGATTCATCTCTTTCCTTGGTGTcgttctgttttgtttggtactcctcttcctctggaGCAGAGGCAAAGGCAATACCAAGCACAACATAGAAATTGAATATGTTCCCCGCAAATCGGATGCTGGCATGAGCAGCAGTGCGGCAGACGCCCCCCGTAAATTCAACATGAAAATGATCTGA

Function

NR:

description
PREDICTED: leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1

GO: NA

KEGG:

id description
K23533 LINGO, LRRN6; leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007695 True 1848 mRNA 0.52 1 26479031 26480878

Neighbor

gene id symbol gene type direction distance location
AMCG00007694 hmg20a,LOC102798875 coding downstream 206581 26262988 ~ 26272450 (-)
AMCG00007693 NA coding downstream 317517 26136652 ~ 26161514 (-)
AMCG00007688 NA coding downstream 583430 25863022 ~ 25895601 (-)
AMCG00007689 NA coding downstream 797174 25672605 ~ 25681857 (-)
AMCG00007683 LOC107739093,LOC107712505 coding downstream 820312 25653720 ~ 25658719 (-)
AMCG00007699 snx33 coding upstream 718765 27199643 ~ 27212764 (-)
AMCG00007706 crabp1,crabp1a,LOC105895658 coding upstream 812549 27293427 ~ 27307131 (-)
AMCG00007705 s2544,LOC108438536 coding upstream 843823 27324701 ~ 27334387 (-)
AMCG00007713 NA coding upstream 1037660 27518538 ~ 27532721 (-)
AMCG00007712 NA coding upstream 1085289 27566167 ~ 27569541 (-)
G25446 NA non-coding downstream 1027009 25451763 ~ 25452022 (-)
G25421 NA non-coding downstream 1222670 25252716 ~ 25256361 (-)
G25415 LOC108275329,LOC103046663,LOC108436939,LOC105912564,LOC107696286,LOC103375935,LOC106584709,LOC104942717,LOC107753195 non-coding downstream 1231652 25207774 ~ 25247379 (-)
G25387 NA non-coding downstream 1489977 24988845 ~ 24989054 (-)
G25375 NA non-coding downstream 1496892 24981934 ~ 24982139 (-)
G25615 NA non-coding upstream 518428 26999306 ~ 26999546 (-)
G25617 NA non-coding upstream 548093 27028971 ~ 27029294 (-)
G25620 NA non-coding upstream 589008 27069886 ~ 27070099 (-)
G25655 NA non-coding upstream 773351 27254229 ~ 27257033 (-)
G25697 NA non-coding upstream 873090 27353968 ~ 27355254 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other downstream 408183 26053764 ~ 26070848 (-)
AMCG00007684 shf,LOC108430988 other downstream 847439 25630792 ~ 25631592 (-)
G25422 NA other downstream 1214080 25264332 ~ 25264951 (-)
AMCG00007637 NA other downstream 2197467 24262690 ~ 24281564 (-)
G25026 NA other downstream 2506366 23971671 ~ 23972665 (-)
AMCG00007704 NA other upstream 876853 27357731 ~ 27370519 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other upstream 2413815 28894693 ~ 28921123 (-)
AMCG00007768 NA other upstream 2520171 29001049 ~ 29013947 (-)
AMCG00007817 NA other upstream 4711132 31192010 ~ 31246649 (-)
AMCG00007822 NA other upstream 4857838 31338716 ~ 31342792 (-)

Expression


Co-expression Network