AMCG00007697 (ptpn9,ptpn9a,LOC106573036)


Basic Information

Item Value
gene id AMCG00007697
gene name ptpn9,ptpn9a,LOC106573036
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27235994 ~ 27253888 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007697
ctctctctctctctctctctctctctctctctctctctcgcttttttATGAATGAAGGAGGGAGCTCATGGCCGTTTATGTATCATTGTAACCAGCAGGGGGACAGTCAGTGTTGCTGGTCTGTGAGCGAGGGCTCTGCTTTTGAAGAAATAAGCAACAGAGGATTAAAGATTGCAGGGCAGCAACACAGGGATGCCTCTAAATCATTGTTTTAAGAGCACAGTGATGAAGATCAGCGCAGGAAGATGGATCTTTTAGCCATTTTACCCGCAGTCCGCCATCAGGAAGGATGAtgcctgtgtctctctctctctgcgagGCTGGAACCGAGTCTGTCTGAAAACACAAGCCGTTTCCAATCACCGaaacaaggaaagaaagaaagaaacaaagtacTCGTATACAGTTGCAGGGACTATTGGCgtctatttacatttgaaaagaaaactttATTTGTACCAATCCTTATACTggacattcatatttttataatggAGTATATATTTTAGTGTGTTGTAGGATCTTTCtctactttgttgtttttgcacatttaaGCGACTacgttgtttttgtattaagtgTGGAACTACTTTTTTATGACTTAAAATAAACCCTGAAGTGATTCCTTCAAAACCACGAAGATATTGTAACAACGAAACGGCAATGGCAGCTAACTTAACAGCAGAGGAGGAGCAGGCTACCAAGCAGTTTTTGGAGGAGATAAACAAATGGACAACCCAGCACGGAGTGTCTCCCCTGTCCTGGAATGTGGCTGTCAAGTTCCTCATGGCTCGAAAGTTTGACGTCCTTCGAGCCGTCGAACTGTTCCACAGCTACAGGgAGACACGTGTAAAGGAGGGGATAGTGAAGCTCAAACCCCTGGAAGAGCCGCTGAAGTCGGAATTGCTGAGTGGGAAATTCACAGTCTTGCTGCACCACCCCAACAAGACTGGGCACCATGTAGTGCTGCAGGCGTTGTTCTACCTGCTGGACCGTGCTGTGGAGAGCTTTGAGACCCAGAGGAATGGCCTGGTGTTTATCTATGACATGGCTGGCTCTAACTACACCAACTTCGAGCTGGACCTCAGCAAAAAGATCCTCAACCTGCTAAAGGGTGCTTTTCCAGCACGGCTGAAGAAGGTGTTCATTGTGGGAGCTCCAGTGTGGTTTCGCGTGCCCTACAACCTGCTAAGCCTGCTGCTGAAAGAGAAACTCAGAGAGAGGGTGCAGATGGTGAAGATGGCAGATCTGCGGCAACACCTCCCCCGGGACTGTCTCCCAGAGCATCTGGGGGGGCTGCTGGCCCTGGACCCCCGTGGCTGGAACCGGCAGCTGCTTACTGTGCAGAACGGCTGTGTCGACCCCGTGGATGAACTGGTGGCTGTACCTTTGGGACCAGGCCGGGAAGAGGCCTCCATCCACACTCCGGGGCTGGAGGCCATGACCCTGCAGGAGCTGGTGGAGCATCTGGCCCTGGTACAACGAGCCGGCATCTACGAGGAATATGATGAGATCCGCAGAGAAGCCCCGCCAGGCACCTTCAACTGCGCCCTAGCTGCGTGTAACCAGGACAAGAATCGATATGGTGATGTCCTTTGTCTGGACCAGACCCGCGTTCGTCTGAAGACTCGAAGAAATGAGAAATCAGACTATATAAATGCCAGCTATATGGATGGTTACAAACAGAAGAATGCCTACATTGGCACTCAAGGGCCCATGCAGAACACCTACAAAGATATCTGGAGGATGATGTGGGAGCAGAATGTCTTAGTCATTGTCATGACCACTAGAACGGATGAAGGGGGCAGAAAGAAATGTGGTCAGTACTGGCCTTTGGAGAGAGGTGAGCAGGAGATGTACGGCCACATCGCCGTGGTCAACCTGAAAGTGGACAACCACTCCCATTACAACCAGACCACCCTGGAAATGCACAATACTGAGACCAATGAACAGCGGCAAGTGACTCATTTCCAGTATCTGAGCTGGCCAGACTATGGAGTACCGAGCTCTGCCATTACGCTGATTGACTTTCTGGGAGTGGTCAAGCGACAGCAGCGCCAAGCTGTCAAGGCCTTTGGTCCTCGTTGGAAGGGCCACCAAGGAGGACCACCAATGGTCGTCCACTGTAGTGCTGGTATCGGCAGAACAGGTACTCTCTGTGCCCTGgacatctgtctgtctcagcTGCAGGATGTTGGCACTCTGAACATCTACCAGACTGTGCGCAGAATGAGAACACAGCGGGCCTTCAGCATTCAAACTCCTGACCAGTACTACTTCTGCTACACTGCTATCCTGGAGCATGCTCAGAGGCTGGGGATCCTCACAGCCAATCAGTAAGGCCTCCCCAGCCACTGTTCCTCAATCCTCAGACCAATAACAGGCCACAGAAGCTGCCTGGACTGACCAAATTGCTCCTTTTTCTGGCACAGCCACCAATTGCAAACAGTCAATGCAAACCAATCTGAATAAACAATATGTGTAAGACACCACCAGACATTAACACAAGTCTAGGCTGGCAATGTCCTTGGCTTAAAGAATCGAACCTTGTCTTGCCATGGATTTCTTTTCCATAGCAGGGAATGGAGTCTTCAAACAATTCAACATACATACTTTGTTCAAGCTAGTCTCTGTTCATTTTCATACCACTGTGAATAATGTATGTGGTGAAGCTAATGGAAAAATATAGTATTACCATGTTATAGAGTGTTGTGAACTGGTGGAAGTTacaactgaatacatttaagcCAGGGCTTCTAATTAAGCAGCAACCAAAGGAGCCTTTATCTTCCATAAAAAGTCACTAATTGTGGTCCTTCATTAAAGATGCTTCTGCTTTTTCTAATTGTAATTGCAGTTTCACAGACttagactgtgtgtgtgtacctcaAGCTTGATGCAAAAGTGTCGATGTAGGTAGATGCTTTTCTAATATTTTGATGCATATTCCACGAGCCATAACAAAACTGTTCTAGGACTAAATTACTTCTTTAAAGTTATGTTGGTGACATTTAACggtcattttcttttgtaatagTACAAACAAGTCTGCTATGTTGTCAAGTCAGCCTTACAAACTTGAGGTGAACATAAGAGGCCTGATGACCTGTTTCCAACCACAATGAGGCATCGAGGCCAGGTGATCGTAGTAGGAACAAGTTGACATGCAATTGGAGAATTTTAAGGTTCAGGATTACTAGTTATAATTTAAGGTTTTGCCACAGACTTGAGTTACGGTTGCATAAGTTCTCTGAAAAGCTACTCAAGGCGATTTAGTTTTTAGTCAGCACTGACAGTGGATAATTGAGTTAACAACCAAACTTGATTTGTATAGGATGAGCATGTCTGAAAATTAATAGTAATGCATTTAGTACAAGACCAGTTCCAACTAGATTATACATAAATCCACAGTGGCTGTCAGaatccagtttgtttttattctggcATTGAGTGGAATTGTGCCCCAGACACACAAGGTATCTTGACATAGTAGCTATATGTTGTCCCATATGCTGTTAGGAGACCCTATATTGCAAgaatagtattttattattttgaccaAGACTGGACCACGTTTAGTTATTCTTCCAGTTATCcctaatttaaacaaacacctATATGCACTCCTCTGTCCCAATATGCTGAGCCTTTGGTGGAACCTGCTTGTCATTCACTCCCATTTTAGTTCATTTCTCTTTGCATTCTGGCACTCTAGATGTGGGCATCCATTCTGTACTATTGTAGAACTACTTAATAGTTGAACTAATTATTCAAAAAGTTAAGGAGATATTTGCAAGAGATTCCTCCATAGAAATGGATAGTAAGGGCCTACTACTGAGTTGCTCTTGAATTACACAGCACCTTACATTCCAGACCGTAAAGTCCCAGGTCAAGGTGTGCAATATAATTTCTAGAAAGGCTTTTTGGGCACTTTCACACAGGCATTCctaatgtgctttttaaaactatatttctgTTCTTAAGTATCGGTAAAACAACCATATAAATTACTAATGTAATGACTTTAGTCTTATAGAAGTAAggattttgtgttgtgttgtgttgctttggCCTCTTCCCAAGACTGGCATGGAGAGGTGGGCAGGGGTACAGGGGCTGAGTTTGGGTcctctgtgtctttgtctgACCAACTGTGCTGTGTACAGCCTTAATTAGCCATTTGTACAAACATTGCTTCCATTGCTTTGCAGGCATCATTTGTAAAATTATCAATCTAATTAAATGTCATAGGAGCTAAACATGTGCTTTACTATTAAATTCATATTGAATTTGCTTGTAGTAAGAATCTCAAGACACATTCCACATGTCCTCgctattatatatacatatatgtgtgtgtatatatatatatatatatatatatatatat

Function

symbol description
ptpn9a Predicted to enable protein tyrosine phosphatase activity. Acts upstream of or within erythrocyte maturation and primitive hemopoiesis. Is expressed in blastomere; brain; intermediate cell mass of mesoderm; and posterior lateral plate mesoderm. Orthologous to human PTPN9 (protein tyrosine phosphatase non-receptor type 9).
ptpn9 Enables protein tyrosine phosphatase activity. Acts upstream of or within negative regulation of neuron projection development; peptidyl-tyrosine dephosphorylation; and positive regulation of protein localization to plasma membrane. Located in cytoplasm and neuron projection terminus.

NR:

description
PREDICTED: tyrosine-protein phosphatase non-receptor type 9 isoform X2

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K18038 PTPN9, MEG2; tyrosine-protein phosphatase non-receptor type 9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007697 True 4390 mRNA 0.44 13 27235994 27253888

Neighbor

gene id symbol gene type direction distance location
AMCG00007698 NA coding upstream 9217 27214770 ~ 27226777 (+)
AMCG00007696 NA coding upstream 56622 27159491 ~ 27179372 (+)
AMCG00007692 NA coding upstream 1104984 26118096 ~ 26131010 (+)
AMCG00007690 LOC107583870,LOC107742881 coding upstream 1120386 26096726 ~ 26115608 (+)
AMCG00007691 ppcdc coding upstream 1152573 26070759 ~ 26083421 (+)
AMCG00007700 sin3a coding downstream 8617 27262505 ~ 27280545 (+)
AMCG00007701 wdr61 coding downstream 63651 27317539 ~ 27324818 (+)
AMCG00007702 NA coding downstream 81037 27334925 ~ 27348351 (+)
AMCG00007703 psma4,LOC107738663,LOC107680153 coding downstream 97335 27351223 ~ 27355475 (+)
AMCG00007707 rbpms2,LOC107086560,LOC103368877 coding downstream 176014 27429902 ~ 27448438 (+)
G25631 NA non-coding upstream 44615 27191169 ~ 27191379 (+)
G25588 NA non-coding upstream 922429 26313363 ~ 26313565 (+)
G25574 NA non-coding upstream 965274 26262827 ~ 26270720 (+)
G25562 NA non-coding upstream 1093706 26136767 ~ 26142288 (+)
G25561 NA non-coding upstream 1101417 26134361 ~ 26134577 (+)
G25645 NA non-coding downstream 213 27254101 ~ 27256998 (+)
G25658 NA non-coding downstream 26769 27280657 ~ 27282110 (+)
G25674 NA non-coding downstream 49960 27303848 ~ 27307066 (+)
G25677 slc25a44,s2544,LOC108438536,LOC108432728,LOC107673271 non-coding downstream 75059 27328947 ~ 27330202 (+)
G25699 NA non-coding downstream 101986 27355874 ~ 27356077 (+)
AMCG00007640 NA other upstream 2736344 24476487 ~ 24499650 (+)
AMCG00007631 NA other upstream 3041513 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 3565915 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 4042473 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 4096473 23133811 ~ 23139521 (+)
G25822 NA other downstream 829934 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 1184756 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 1428283 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 1646170 28900058 ~ 28911566 (+)
AMCG00007769 acsbg1 other downstream 1749207 29003095 ~ 29006379 (+)

Expression


Co-expression Network