AMCG00007699 (snx33)


Basic Information

Item Value
gene id AMCG00007699
gene name snx33
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27199643 ~ 27212764 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007699
ATGTCATTGAAAGCCAAGGCACTTTACACCTTCCAGAGTGAAAATAAGGAAGAAATCAGTATCCTGGAGAATGAAGAGCTGGTTATTTTTGATGAGAACTCATTAGATGGGTGGCTACAGGGCGAAAACAGTAGGGGAGAACGAGGCCTCTTTCCGGCCTCTTATGTTGAAATCATCAGACCAAGGGCCAATTCCAACCTTACAGACTACTCCAGCAGCCCTACAGGCTCCCCTGGCAATGACTCTTACTACAGCAACTATACGCCCCCCTACCACCAGGGcagttatgatgatgatgatgatgacgactGGGATGACTGGGATGATAGCTCCACagtggtggaggaggaagagtCTCGGCGAGGAATTGGCGCCAACGGACATGCCCACCAGTCTCCCCATGCCAACCCTAATGTCCACTACCGCACCAAACCACCCATGGAACGGCAGGACAGTATTTCCAGCTCCAGGAAGGGCAGCGTGGTGGGCAGAAACCTCAACCGCTTCTCCAGCTTTGTCCGCTCCGGAGTTGAGGCGTTTGTGCTGGGGGACGTGCCGATGATGTCCAAGATCGCAGAGACTTACCAAGTCGAGATGGGTTCCAGAGGCCCACAGTGGAAAGGCAACCCCAGGCCTTTTTCTTGTTCCATTGAGGATCCCACTAAACAGACCAAATTCAAGGGCATCAAGACCTACATTTCCTATCGGGTGACACCCAGCCACACAGGCAGGCCTGTCTACCGCCGCTACAAGCACTTTGACTGGCTCTACAACCGGCTACTGCACAAGTTCACAGTTATCTCCGTGCCCCACCTGCCGGAGAAGCAGGCCACTGGGCGCTTCGAAGAGGACTTCATTGAGAAGCGGAAGCGGAGGCTAATCCTGTGGATGGACCACATGACCAGCCACCCAGTGCTCTCCCAGTATGAAGGCTTCGAGCACTTCCTCATGTGTGCAGATGACAAACAATGGAAACTGGGTAAGCGGCGGGCCGAGAAGGACGAGATGGTGGGTGCCAGCTTCCTCCTCACATTTCAGATTCCCAATGAGCACCAGGACTTGCAGGATGTGGAGGAGCGGGTAGACTCCTTCAAGGCCTTCACCAAGAAGATGGATGATAGTGTAATGCAGCTCACCCATGTGGCCTCCGAGCTTGTGCGCAAACACTTGGGTGGATTCCGCAAGGAGTTCCAGAAGCTGGGCAATGCCTTCCAGTCTGTCAGCCAGGCTTTTGCCTTAGATCCCCCATACACCTCAGATGCCCTGAACAACGCCATCTCCCACACCGGCCATACATACGAGACCATAGGGGAGATGTTTGCAGAGCAACCAAAGAACGATCTCTTCCATATGCTGGACAAGCTCTCCCTCTACCAGGGACTGCTCTCCAATTTCCCAGACATAATTCACCTCCAAAAAGaGTCTCACGATTATGTAGCCAACAGATCCTTCTCTATTATGATTGCTGAATCCCATGACCATAGAGACAACAAAAGACTTGTCATTCTTGTTCGAGTGTTTGGGGAGGACGGAGCAGCCAGTGGCATTCTTGACATGCCGGTGTGCAATGTCGGTACTAACAATGCCATCTTTGCCATGCTGGACAAAACACTAAGAGAATGTGGCTTTGTGTTTCCTGGACTACAAGGTGCTTTTGCGAAAGTGAAAGAGAGCCAACGGATGAGCGACGAGGGCAAGATGGACCAGGAAGAAGCCGACAGTGTCAGGAAGCGCTGCCGCGTGGTGGGCTTTGCCCTGCAGGCTGAGATGAACCACTTCCATGAGCGGCGGGCCGTGGACTTCAAGGAGATGATGCAGGCCTACCTGAAGCAACAGATCGCCTTCTACCAGCGGGTGGGCCAACAGCTGGAGCGCACCCTGCACATTTCAGGGGCGCTGGTCGAGTCCCTGTGGAGTCGTGGCCGTGGGGCTGCTCAATACAAGGGGAGCCATGCCAGGAAAGATTATGCTGGCTTCGTTGTGCTGGTGGGCATGGGGTTGGGGTGA

Function

symbol description
snx33 Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within endocytosis; intracellular protein transport; and mitotic cytokinesis. Predicted to be located in cytoplasmic vesicle membrane. Predicted to be extrinsic component of membrane. Orthologous to human SNX33 (sorting nexin 33).

NR:

description
PREDICTED: sorting nexin-33

GO: NA

KEGG:

id description
K17923 SNX9_18_33; sorting nexin-9/18/33

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007699 True 2007 mRNA 0.54 5 27199643 27212764

Neighbor

gene id symbol gene type direction distance location
AMCG00007695 LOC107560004,LOC107562294,LOC107727415,LOC107673268 coding downstream 718765 26479031 ~ 26480878 (-)
AMCG00007694 hmg20a,LOC102798875 coding downstream 927193 26262988 ~ 26272450 (-)
AMCG00007693 NA coding downstream 1038129 26136652 ~ 26161514 (-)
AMCG00007688 NA coding downstream 1304042 25863022 ~ 25895601 (-)
AMCG00007689 NA coding downstream 1517786 25672605 ~ 25681857 (-)
AMCG00007706 crabp1,crabp1a,LOC105895658 coding upstream 80663 27293427 ~ 27307131 (-)
AMCG00007705 s2544,LOC108438536 coding upstream 111937 27324701 ~ 27334387 (-)
AMCG00007713 NA coding upstream 305774 27518538 ~ 27532721 (-)
AMCG00007712 NA coding upstream 353403 27566167 ~ 27569541 (-)
AMCG00007719 NA coding upstream 454757 27667521 ~ 27672745 (-)
G25620 NA non-coding downstream 129544 27069886 ~ 27070099 (-)
G25617 NA non-coding downstream 170349 27028971 ~ 27029294 (-)
G25615 NA non-coding downstream 200097 26999306 ~ 26999546 (-)
G25446 NA non-coding downstream 1747621 25451763 ~ 25452022 (-)
G25421 NA non-coding downstream 1943282 25252716 ~ 25256361 (-)
G25655 NA non-coding upstream 41465 27254229 ~ 27257033 (-)
G25697 NA non-coding upstream 141204 27353968 ~ 27355254 (-)
G25726 NA non-coding upstream 216993 27429757 ~ 27540936 (-)
G25730 NA non-coding upstream 225244 27438008 ~ 27451511 (-)
G25735 NA non-coding upstream 288186 27500950 ~ 27504962 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other downstream 1128795 26053764 ~ 26070848 (-)
AMCG00007684 shf,LOC108430988 other downstream 1568051 25630792 ~ 25631592 (-)
G25422 NA other downstream 1934692 25264332 ~ 25264951 (-)
AMCG00007637 NA other downstream 2918079 24262690 ~ 24281564 (-)
G25026 NA other downstream 3226978 23971671 ~ 23972665 (-)
AMCG00007704 NA other upstream 144967 27357731 ~ 27370519 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other upstream 1681929 28894693 ~ 28921123 (-)
AMCG00007768 NA other upstream 1788285 29001049 ~ 29013947 (-)
AMCG00007817 NA other upstream 3979246 31192010 ~ 31246649 (-)
AMCG00007822 NA other upstream 4125952 31338716 ~ 31342792 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000139_00336265_00353558 SNX33 coding CI01000139 null 336035 ~ 354831 (+)