AMCG00007701 (wdr61)


Basic Information

Item Value
gene id AMCG00007701
gene name wdr61
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27317539 ~ 27324818 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007701
ACAATATTGAATTatcaaaaatgctttatttattttttcaggctAGACCAAAGTTTGGTATACgttacaaaaagcaaaacatgaccACACAAtacagtatacttTTCAAGCAAGAACATGCTCATGATGACGCTATCTGGACTGCTGCCTGGGGACGGAGTGAGAAGGACGGGTCAGAAACCATCGTGACGGGGTCTCTAGACGACTTGGTGAAAGTCTGGAAATGGTGTGATGAGAAGCTGGAGTTGCAGTGGACGCTAGAAGGTCATCAGCTGGGTGTGGTGTCCGTGGATATCAGTCACAATGGAGCCATCGCAGCCTCCAGCTCCTTGGATTCCCACATACGGCTCTGGGATCTTGAATCTGGCAAGCAGATCAAGGCGATGGATGCAGGACCAGTTGACGCTTGGACTGTGGCGTTTTCGCCAGACTCCAAATACATAGCCACGGGAAGTCACCTGGGGAAGagcCCAGATGGAAAATATTTGGCGAGTGGGGCTATAGAtggaattattaatatttttgatatTGCAACTGGAAAACTTCTCCACACCTTGGAAGgtCACGCTATGCCTATTAGATCCCTTACATTCTCGCCAGATTCTCAACTTTTAGTAACGGCCTCAGATGATGGGTATATCAAGATTTATGATGTacaACATGCTAACCTAGCAGGGACTCTGAGTGGCCATGGATCTTGGGTATTAAATGTTGCCTTTTGTCCAGATGACAGCCACTTTGTTTCAAGTTCTTCTGACAAGAGTGTGAAGGTCTGGGATGTCGCCTCAAGAGCCTGTGTTAATACTTTCTTTGACCATCAGGACCAGGTCTGGAGCGTTAAGTACAATGGAAATGGTTCCAAGGTAGTTTCTGCAGGAGATGACCGCGCAATTCATATTTATGACTGTCCAGTTTGAAAAGGGGTTATTGGACTGACAAAAACATCTGGCAGTTACAGCCCCCTGCAAACTCTGTACTTGTTGTCTGTATTGGTATGATAACTAGACTATGATCTATTGGAAGCAACTCAATGAAGCCAAAACCGAAGACAGCAATTGATGCATTGGTGGtggtatgacattttttttattttagtttttttgtaattagCATTCATTTTGACTACCTGGAACTGCTTTTGTCTTGCATTTAATGAAGCAATCGCAAAACATCCATTCCTGTTCATGATCAAGAGGTTACGcaaataaatccattatttttattctttgatGTTGACctaatttattcatattttgtatgtatctgaaacatgcatttaattaaattacatatttcctTTGTATAAAGGAACCTTATCAGTTTGGGTTcatgaattacatatttaaaataatatataaatagtgtCCCTTGGCACTGGAAAATATAAGGAATAGGATCCTTCAacataaatgcacacaaaataaaattatatctTAAATGTCCAGTGGCAGTTGAGTGATCTTGAGTCAGTCCTGTTTCACTGTTCAATTAGGACTACTGCATTATCCTCTCTTCTTATCAGTGTTTGAAGTGCAATTTCTCATTCTTCTCTGTAAATATGTTTCGTTATTTC

Function

symbol description
wdr61 Predicted to be involved in transcription elongation from RNA polymerase II promoter. Predicted to be located in cytoplasm; nucleus; and transcriptionally active chromatin. Predicted to be part of Cdc73/Paf1 complex and Ski complex. Orthologous to human WDR61 (WD repeat domain 61).

NR:

description
PREDICTED: WD repeat-containing protein 61

GO:

id name namespace
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0035327 transcriptionally active chromatin cellular_component
GO:0055087 Ski complex cellular_component
GO:0016593 Cdc73/Paf1 complex cellular_component

KEGG:

id description
K12602 WDR61, REC14, SKI8; WD repeat-containing protein 61

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007701 True 1573 mRNA 0.40 10 27317539 27324818

Neighbor

gene id symbol gene type direction distance location
AMCG00007700 sin3a coding upstream 36994 27262505 ~ 27280545 (+)
AMCG00007697 ptpn9,ptpn9a,LOC106573036 coding upstream 63651 27235994 ~ 27253888 (+)
AMCG00007698 NA coding upstream 90762 27214770 ~ 27226777 (+)
AMCG00007696 NA coding upstream 138167 27159491 ~ 27179372 (+)
AMCG00007692 NA coding upstream 1186529 26118096 ~ 26131010 (+)
AMCG00007702 NA coding downstream 10107 27334925 ~ 27348351 (+)
AMCG00007703 psma4,LOC107738663,LOC107680153 coding downstream 26405 27351223 ~ 27355475 (+)
AMCG00007707 rbpms2,LOC107086560,LOC103368877 coding downstream 105084 27429902 ~ 27448438 (+)
AMCG00007708 ap3b2 coding downstream 153193 27478011 ~ 27504969 (+)
AMCG00007709 cpeb1,LOC106587658,LOC105013741 coding downstream 180848 27505666 ~ 27516702 (+)
G25674 NA non-coding upstream 10473 27303848 ~ 27307066 (+)
G25658 NA non-coding upstream 35429 27280657 ~ 27282110 (+)
G25645 NA non-coding upstream 60541 27254101 ~ 27256998 (+)
G25631 NA non-coding upstream 126160 27191169 ~ 27191379 (+)
G25588 NA non-coding upstream 1003974 26313363 ~ 26313565 (+)
G25677 slc25a44,s2544,LOC108438536,LOC108432728,LOC107673271 non-coding downstream 4129 27328947 ~ 27330202 (+)
G25699 NA non-coding downstream 31056 27355874 ~ 27356077 (+)
G25709 ppib,LOC102792920,LOC107680152,LOC107577199,LOC107754356,LOC107673286 non-coding downstream 241877 27566695 ~ 27569353 (+)
G25753 NA non-coding downstream 245725 27570543 ~ 27571491 (+)
G25819 NA non-coding downstream 745528 28070346 ~ 28078121 (+)
AMCG00007640 NA other upstream 2817889 24476487 ~ 24499650 (+)
AMCG00007631 NA other upstream 3123058 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 3647460 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 4124018 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 4178018 23133811 ~ 23139521 (+)
G25822 NA other downstream 759004 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 1113826 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 1357353 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 1575240 28900058 ~ 28911566 (+)
AMCG00007769 acsbg1 other downstream 1678277 29003095 ~ 29006379 (+)

Expression


Co-expression Network