AMCG00007702


Basic Information

Item Value
gene id AMCG00007702
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27334925 ~ 27348351 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007702
GGTCAAAACTATTCCGCACATGACGGCGGCCTGGAAGGGACATGTGATTCGTTCGCGTTACAAAACTGCACCTCTGCCGCGGTTGGCCGGCGGCCGAGTGGGCGGCGCCCTGCGCGATTGGACGGGCGGCGGGGAGGCGTGCCGCGCCGCGCCGCGGAGGAGATCGTGTGTGTTACAGACCCCGTCATGGCGCTCGCTGCCGCAGCTCAAGaccACCCTTACCAAAATCTGATCGACACCTTGAAAAATGTTAGTTCCaaagacagacatttttttaaccttCAGAAACTCAATGACCCAAGATATGATGCGTTGCCTTTTTCAATCCGTGTCTTGCTGGAAGCTGCAGTCCGCAAGTGCGATGGCTTTTACGTGAAAAAGGAGGATGTCTTGAACATCCTGGACTGGTGCCAGCAGCAGAGCAGTGTTGAAGTGCCATTCTCCCCTGCGCGGGTCCTCCTCCAGGACTTCACGGGTATTCCAGCTATGGTGGATTTAGCTGCAATGAGAGACGCAGTGAATAAACAAGGAGGTGATCCAGAGCAGGTTAACCCTCTGTGTCACACTGATCTCATCGTAGACCATTCATTACAGATCGACTTCAGCAAATGTGCAATTCAGAACTCGCCAAACCCAGGTGGAGGGGAAGGTCAGGGAGCAGCTGCCAGGTCCTCTCCTGCCAAGCCTCAGCCCCGGGGTGCCCAGTGTGGAGGGCAGAGGGGCTGCAGAGGGTCCTGTAATGAAGGCACCGCTACCTCAGGAAAATCGACTGCTGTCCAGATCGAAAACACACCAATCCTCTGTCCCTTTCATCTACAGCCTGTTTCTGATCCAGAAACCACCTTGAAGAATCAAGAAGTGGAGCTGAACAGAAATAAGGAGAGGCTGCAGTTCTTTAAGtggTGCTCAAAAGCATTTACAAATGTGAATGTAGTCCCCCCGGATGCAGGAGCCATCCACCAAGTGAACTTGGAGTACCTGTCACGTGTGGTGCGTGACGATGGTGGCTTTCTCTACCCTGACAGCGTGGTTGGTACAGACTCGCACACCACCATGATTAATGGGCTGGGGATTTTGGGCTGGGGGGTGGGTGGTATTGAATCGGAAGCTGTTATGCTGGGCCAGCCGATCTCTTTGACTTTACCCCAGGTGGTCGGGTGCAAGCTTGTTGGATCCATTAACATGTTGGCTACGTCCATAGACATTGTCCTTGGTATTACAAAGCACCTTCGACAGGCTGGTATTGCTGGTAGATTCGTGGAGTTCTTTGGGCCAGGGGTCTGTCAGCTGTCTGCTGCAGACCGGACTACAATTGCCAACATGTGCCCAGAGTACAACGCCACTGTGAGCTTTTTCCCTGTCGATGATGTAACACTTAAGCACTTGAAACAAACAAaatttagTGAAGAGAAACTTGACATAATGGAAGCTTACCTCAAAGCTGTGAAACTGTTTAGAAACTATCAGGACCCGTCAGAAGATCCACAGTATTCTGAGGTAATAGAAATAAACCTAAGTTCCATCATTCCCCATGTGAGTGGCCCCAAGCGACCGCAGGACAGGGTGGCTGTTTCCAACATGAAGAAAGATTTTTTAAACTGTCTAAACGAGAAGGTGAGCTTTAAAGGCTTCCACATTCCCTGTGAAAAACAGGAGACTGTGATGCCCTTCCTTCATGAAGGAACAGAGTACAAGCTTGCTCATGGCTCTGTTGTTATTGCTGCTGTGATCAGCTGCACAAACAATTGCAACCCCTCTGTCATGCTGGCGGCAGGGCTGCTTGCGAAAAAGGCAGTGGAGGCCGGCCTGACCGTTAAACCTTACATAAGGACAAGCTTGGCACCTGGGAGTGGAATGGTGACTCACTACCTTAGTGCAAGTGGTGTATTACCTTACCTCAGTGTGCTTGGGTTTGAAGTGATTGGTTATGGGTGTGCCACCTGCGTGGGAAATATGGCCCCACTTCCAGAGGCAGTTGTTGATGCTATTAAACAGGGAGATTTAGTTGCCTGCGGTGTGCTCTCTGGAAACAGAAACTTTGAAGGccgtctgtgtgagtgtgtgcgtgccAACTACCTCGCCTCCCCCCCTCTTGTGGTAGCTTACGCTATCGCTGGCACTGTTGGCATCGACTTCGAAACAGAACCTCTGGGCGTGACTGCTGACGGTAAAGAGGTGTATCTTCGTGAAGTGTGGCCCACGAGAGAAGAGCTCCAGCAGACTGAGGAGCAGAGTATCATCCCATCCATGTTCGCAGATGTAAAAGAGAGAATGGAGACTAAAGAGGCACCTCCTCCACAGTCCATCGAGAATGCTTATGCGTTGCTCTTTTTGGGGGACATGGTCACAACCGATCACATTTCACCCGCCGGAAGTATAGCCCGGGTGAGCGCTGCTGCCAAATACCTGACAACCAAACGCTTGACACCTCGAGAGTTTAACTCGTATGGGGCTCGCCGAGGGAATGATGCTGTGATGACGAGAGGCACCTTCGCGAGCATCAAGCTGCAGAATCGCTTCATTGGGAAGACAGGCCCAAAGACGCTGCACATCCCCTCAGGACAGACGCTGGATGTGTTTGAGGCAGCAGAAAGATACCAGAGGGAGGGCATCCCAGTCATCATTCTGGCAGGCAAGAAGTATGGCTCTGGAAACTCACGAGACTGGGCTGCCAAAGGACCCTATCTACTGGGCGTGAAAGCGGTCATCGCAGAGAGCTTTGAAAGGATGCATAAGAACCATCTGGTCGGCATTGGGATTGCTCCTCTTCAGTTCCTGCCTGGAGAGAGTGCTGATGTGCTAGGCCTGTCTGGAAAAGAGAAATTCTCCATTTCAATTCCAGAAGTCCTCTCCCCAAGACAGGAGCTCACTGTAAAGGCAAGCAGTGGGAAGATCTTCAAAGTGATTGCcctgtttgaaaatgaaatggatatAGTTTTTTTCAAACAAGGAGGGATCCTTAAATATGTGTCTCGAAACATGTTACAGCACTTGCCTTGATGGATCTTTTTAAAGAGGAAAGCCTTCTTCAGCCGCAAGCACCTGCTGCATTATTAGTGGAGCATTATggtatattttaacattgtggTTCTTGCGATCTAGCCTAAATAAAGAATGGTATGAAATATTAACATGCATACTACAGTACTGGTACACACTATAGTACTGAAAGGAAAAGTAGTGCACTTTGACTGCCTTTTAACACCTCGGAAGGAAGGATGTGCAGAGTTCACCTTGAATCAAGAAGTAGCTTGAACATTGTCcatgtttacttattttgtcAGACTCCTCATTTTCACAGATGCCTTTGTTGCACTTAAGACATATCCAGTATACTTTGTATTGGTTAATGTGGaagagttatttttttttactaccgTTTATACACTTCTtgacagaaatgtttcactaaCAACTGACTGACTCCCTTGTCAAATTGTACAGCCCCTGTGGGACGTGAAGAAAGCCTGATTCCTGTTACTATAGCAGCTTAACAAGGGGTAAAATTAAACCAGAGCTATCTCGCACAGATTAGTGATCAGCCTTGTTAATTGCCTTCTGACAATTTGATGATATGGTGTTAACTTCTGAAGGGTAATCTGTTAAATACACCTTTCTGGAACCTCTGAATATTTATCACCAATATTGTCTAAATACAGTGACCTGGTGGATCCTTGTTTCTTATGAATTTGGCCTGTAACTTTATAGAATAGTTGaattgctgtatttttcttttttaatagtGGATTTATATGAATCCAGTCAAAATTGCTTCTCTACACGGGTATTGTAACACATCACTGTGGAACTGCAGTGTAATTCCTCTTTCCTCAGAGGGTTTGGTCTGTGCCATCCAGATAATATTCAGCTGAGCCCAAATGcacattgtgtttaaatgtcacTCATCTTGTAAGACTGCCGGAATCtaaaaaaatgctgttcagTATGCTTGCATTGGGTTGGGTgggggataaataaataattgaaattgatttttCTCCTGTTGCTGAGGCTCAGCTGCGtcatgtgttttaaaattattcagtGGTTATGCAAGCTCTGCAGTTCCAGTCTGTATGTGTTCTTTCTGTGATACTCAGtccttatttgaaaatatagaaacACATAACATGTAGATGCTGCTTCTAAAAAATCTTCATTTTTAATCTATTATTTTGTCACATTGTTTGTGCTTGATCCGGTACTACAGTCAGGCTGTGTTCAAATTCATTCTGCCTTTGGTGCAGTGGTCATGATACTGCATTGAGTTTCTCTTGTGCTCAGTGAAGTCTTTATAACTCTGTATGTTACGAATGCCATTGTAAATCCTTTgtggaaaaatgtaaaagtcagGACAATGCAAGTATAATAACTTCTAGAAGTAACTGTAAACCTACTTTAAAACTTTGTGTATGTGGTGTGGTGCTTTATGTATAGCATTGTATGGGGTTTGGCAATATGCCATTTCACAGCAATCcccattttccagtttttagaATTGCATCGTATGCAATACAAGGGCACACAGCACAAGCCAACAAGAAGTacttaataaaagaaaaaatatattattgtaaaaaaaaattaaactctAACTATTAACTGTTGCTGATattgtaaatacaattttaataaagaaTCAAATGTAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG:

id description
K22416 IREB2; iron-responsive element-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007702 True 4649 mRNA 0.46 21 27334925 27348351

Neighbor

gene id symbol gene type direction distance location
AMCG00007701 wdr61 coding upstream 10107 27317539 ~ 27324818 (+)
AMCG00007700 sin3a coding upstream 54380 27262505 ~ 27280545 (+)
AMCG00007697 ptpn9,ptpn9a,LOC106573036 coding upstream 81037 27235994 ~ 27253888 (+)
AMCG00007698 NA coding upstream 108148 27214770 ~ 27226777 (+)
AMCG00007696 NA coding upstream 155553 27159491 ~ 27179372 (+)
AMCG00007703 psma4,LOC107738663,LOC107680153 coding downstream 2872 27351223 ~ 27355475 (+)
AMCG00007707 rbpms2,LOC107086560,LOC103368877 coding downstream 81551 27429902 ~ 27448438 (+)
AMCG00007708 ap3b2 coding downstream 129660 27478011 ~ 27504969 (+)
AMCG00007709 cpeb1,LOC106587658,LOC105013741 coding downstream 157315 27505666 ~ 27516702 (+)
AMCG00007711 NA coding downstream 185118 27533469 ~ 27549963 (+)
G25677 slc25a44,s2544,LOC108438536,LOC108432728,LOC107673271 non-coding upstream 4723 27328947 ~ 27330202 (+)
G25674 NA non-coding upstream 27859 27303848 ~ 27307066 (+)
G25658 NA non-coding upstream 52815 27280657 ~ 27282110 (+)
G25645 NA non-coding upstream 77927 27254101 ~ 27256998 (+)
G25631 NA non-coding upstream 143546 27191169 ~ 27191379 (+)
G25699 NA non-coding downstream 7523 27355874 ~ 27356077 (+)
G25709 ppib,LOC102792920,LOC107680152,LOC107577199,LOC107754356,LOC107673286 non-coding downstream 218344 27566695 ~ 27569353 (+)
G25753 NA non-coding downstream 222192 27570543 ~ 27571491 (+)
G25819 NA non-coding downstream 721995 28070346 ~ 28078121 (+)
G25827 NA non-coding downstream 756251 28104602 ~ 28109590 (+)
AMCG00007640 NA other upstream 2835275 24476487 ~ 24499650 (+)
AMCG00007631 NA other upstream 3140444 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 3664846 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 4141404 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 4195404 23133811 ~ 23139521 (+)
G25822 NA other downstream 735471 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 1090293 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 1333820 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 1551707 28900058 ~ 28911566 (+)
AMCG00007769 acsbg1 other downstream 1654744 29003095 ~ 29006379 (+)

Expression


Co-expression Network