AMCG00007703 (psma4,LOC107738663,LOC107680153)


Basic Information

Item Value
gene id AMCG00007703
gene name psma4,LOC107738663,LOC107680153
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27351223 ~ 27355475 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007703
ATAAAGTTATCACTCTTGATCTATGGATGTCCAGCGAGTTGTCATTGGACACAGAAGGGGACCgctggctgctctctccctgACCAGCTGTGTGGTGTATTCGACAGGTCGTCTGTACCAGGTGGAGTATGCAATGGAAGCCATTGGTCATGCAGGCACATGCCTAGGTATACTGGCCAATGATGGCGTGTTGTTGGCAGCAGAGAGGCGCAATATTCACAAGCTGCTTGACGAAGTCTTCTTCTCTGAGAAGATCTACAAGCTCAATGaAGATATGGCCTGCAGTGTTGCTGGAATAACCTCCGATGCCAACGTGCTAACCAATGAGCTGAGACTAATAGCACAGAGgTATTTGTTGCAGTACCAGGAGCCAATCCCCTGCGAGCAGTTGGTAACAGCACTTTGTGACATCAAACAGGCGTACACACAATTTGGAGGCAAGAGGCCCTTTGGGGTTTCCCTGCTCTACATGGGCTGGGACAAACATTATGGCTTCCAACTGTACCAGAGTGACCCCAGTGGAAACTACGGAGGCTGGAAGGCCACCTGCATTGGCAACAACAGTGCTGCTGCTGTGTCCATGCTGAAGCAGGATTTCAAGGAAGGAGAAATGACATTAGCATCAGCTCTTGCCTTAGCAGTCAAGGTGCTGAATAAAACCATGGATGTGAGCAAGCTGTCTGCTGAGAAAGTGGAAATTGCCACACTGACCAGGGAAAACGGCAAGACCAAGATCAAAGTCCTGAAGCAGAAGGAGGTGGAAGGACTGATCAAGAAACACGAGGCAGAGGAGGCCAAGGCCGAGCGGGACAAGAAGGAGaaggaacagaaagaaaaggatAAATGAGCACCTGACTTTTCACCTTTTTCTAAATTGACAGATTTTTGTTTCCAAAATACTATTGATtacttgtctttttttctgtaagaAAATCTCAATATACACATACCAATGTTAACTACATTGCAGACTCTTTTATTGCATTCCTTTCCCAGATTGAGTTTTCTTCAGTCTGTTTTGCAATGTGTTCATCCTACTGAGACATCTAAATAAAAGCCTGCCAGGTGGGACTGTTTAACAAACAAGGTGTAAACTCAAATATATCACAAGTATACTTAGTTAGCTGGGCTAGTGAGGGTCTCCCTTAAACACATCTTCAGTAATTCATAGTTTGAAGATAAATACGT

Function

symbol description
psma4 Predicted to enable threonine-type endopeptidase activity. Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, alpha-subunit complex. Predicted to be active in cytosol and nucleus. Orthologous to human PSMA4 (proteasome 20S subunit alpha 4).

NR:

description
PREDICTED: proteasome subunit alpha type-4

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
K02728 PSMA4; 20S proteasome subunit alpha 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007703 True 1188 mRNA 0.45 6 27351223 27355475

Neighbor

gene id symbol gene type direction distance location
AMCG00007702 NA coding upstream 2872 27334925 ~ 27348351 (+)
AMCG00007701 wdr61 coding upstream 26405 27317539 ~ 27324818 (+)
AMCG00007700 sin3a coding upstream 70678 27262505 ~ 27280545 (+)
AMCG00007697 ptpn9,ptpn9a,LOC106573036 coding upstream 97335 27235994 ~ 27253888 (+)
AMCG00007698 NA coding upstream 124446 27214770 ~ 27226777 (+)
AMCG00007707 rbpms2,LOC107086560,LOC103368877 coding downstream 74427 27429902 ~ 27448438 (+)
AMCG00007708 ap3b2 coding downstream 122536 27478011 ~ 27504969 (+)
AMCG00007709 cpeb1,LOC106587658,LOC105013741 coding downstream 150191 27505666 ~ 27516702 (+)
AMCG00007711 NA coding downstream 177994 27533469 ~ 27549963 (+)
AMCG00007710 NA coding downstream 198113 27553588 ~ 27566646 (+)
G25677 slc25a44,s2544,LOC108438536,LOC108432728,LOC107673271 non-coding upstream 21021 27328947 ~ 27330202 (+)
G25674 NA non-coding upstream 44157 27303848 ~ 27307066 (+)
G25658 NA non-coding upstream 69113 27280657 ~ 27282110 (+)
G25645 NA non-coding upstream 94225 27254101 ~ 27256998 (+)
G25631 NA non-coding upstream 159844 27191169 ~ 27191379 (+)
G25699 NA non-coding downstream 399 27355874 ~ 27356077 (+)
G25709 ppib,LOC102792920,LOC107680152,LOC107577199,LOC107754356,LOC107673286 non-coding downstream 211220 27566695 ~ 27569353 (+)
G25753 NA non-coding downstream 215068 27570543 ~ 27571491 (+)
G25819 NA non-coding downstream 714871 28070346 ~ 28078121 (+)
G25827 NA non-coding downstream 749127 28104602 ~ 28109590 (+)
AMCG00007640 NA other upstream 2851573 24476487 ~ 24499650 (+)
AMCG00007631 NA other upstream 3156742 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 3681144 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 4157702 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 4211702 23133811 ~ 23139521 (+)
G25822 NA other downstream 728347 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 1083169 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 1326696 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 1544583 28900058 ~ 28911566 (+)
AMCG00007769 acsbg1 other downstream 1647620 29003095 ~ 29006379 (+)

Expression


Co-expression Network