AMCG00007705 (s2544,LOC108438536)


Basic Information

Item Value
gene id AMCG00007705
gene name s2544,LOC108438536
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27324701 ~ 27334387 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007705
ACGGCATGACATTTACAGAACAGACTGTAGAAATATACGAGTAGGCCGGAAATTAAAATACGGTCTTTGATGcataatattttcatttgttataTAAAGATTTGCGTTTATCTTGTTTATAGCAGTATAGCGGTGAACATGGATTTTTAAAGAAGATAACTACGGCAGCTGGAAACCAATCTGATGACGGGAGCTGTGGGGGAGAACGATGCAGGAGAAGCGCAACATTCAGATCATAGAATGGGAGGACCTGGACAAGAGGAAGTTCTACTCCTTCGGGGTGTTCATGACCATGACGATCCGGGCGACCGTGTACCCCGCCACGCTCATCCGCACGCGACTGCAAGTGCAGAAAGGGAAGTCCCTCTACAGCGGCACGTTCGACGCCTTCTTTAAAATCCTGAGAGCTGAGGGCGTCCGCGGACTCTACAGGGGATTCCTGGTGAACACATTCACTTTGATCTCGGGGCAGGGATACATCACCACATATGAGCTTGTCAGGAAATACGTGTCCACCTACTCGGAGAACAATACCTTGAAGTCGCTGGTAGCCGGAGGGTCTGCCTCCCTGGTGGCTCAAAGCATCACGGTTCCCATTGACATCGTCTCGCAGCACCTCATGATGCAAGGCCAAGGAGACAACATGGGCCGCTTCAAAATCAAGTCCAAAACAGTGGTGTTGGCTACTAAGCACAAGGTGACTTTTGGCCAGACCAGAGATATCATAGTTCAGATTTTTGCAGCTGATGGTTTCCGTGGATTTTACAGGGGCTACGTTGCCTCCCTCTTAACGTACATCCCAAACAGTGCAGTTTGGTGGCCTTTTTATCATTTCTATGCAGAACATTTATCTAAATGGGCACCCAGTGAATGCCCACACCTGCTCCTTCAAGCCATGGCTGGGCCTTTGGCAGCTGCTACAGCCTCCACTGTCACCAACCCTATGGATGTAGTCCGGGCCAGAGTGCAGGTGGAAGGCAAGTCTTCAGTGATTGAGACTTTTAAACAGCTCCTGGCTGAGGAGGGCTTCTGGGGAATGACTAAGGGGCTGTCTGCCCGCATCATCTCCTCCACACCCACGGCCATTGTGATGGTGGTGGGCTATGAAACCCTGAAGAAGCTGAGCCTGCGACCAGAGCTGGTGGATTCCAGGCACTGGTAGAGAAACTGGAGGCAGCCCTCATCCTCAAAGCCAGTTCTCCCTCTGCACaagcagtttttgttgttttggtttttcgTTTCATGTTTCTGGGCCTTTAAACTTTTTTGCCTTGTGAAGTTATTTGCAGGAGGGAGATATTTTTATCATGGTAACCAGGTGTGGTGGCAGGTGCCTCAGTTTTCCCAGTTCAgctagattttaaatattttttccagaaGACTTCTGTAAGAGCTGCCTGCCATGACCATTTATTTccataaaacaaattgattatttattttattaaaaacaaaggacaaaaacatgttccttttaaactgtttaacaaaaatacCATTTAATTGTGTGTACATGTTTAGATCATCTTGTAATGGAATTCACTTAATTCtcaaacatttccaaaatactGTGGGagtaattatttacttaattataaaatatgtaaaatacaacttttaaattattcttctgATCAGAAAGGTTACGGTGCATTTGAGGAAATAAAGGTTCCAATTTATATAGACCTACTTAACGTTTAGAATTTACCATAAAAACGAGTTTGTAAAATCTTTTCTGCTTACACTAAATACCATCAAATCAACACTCACACTTTAGGGTCATATGGCCCTAAACAGAGATGCGGCCGCAACTGTGAACTGCGCAAGACTCGTGGGCTTTTTGATTGAAGAGCAGATTGACACATTCACATTGCtaaacaggaaaagaaaactcTGACCATAATTGTGGTGTTGTAAGCaagttttaaaattgttaataaaaaaagtggTTTTAACAGCAATCTGGAATGGAGGTGGCCTATGGTAGCAAGACCAGTCTTCAGTGATGCCTTTTTAATGCAGTGAGCCAGTTTGACATGATCCATATTTTTAGAAGCAGGGCGCCTTTCCCGTATTCAAGCCTCATTATTCCAAGGACGCATACGAGAGCCTGATTGAAGCAAGCTAGTAGAGAATGGTGAACAGGTGTGACTTTCTCCCATGTCTCTGTTCAGCAGATTAGAGTACAACTGTTGCATTATAATCATGTCAGTTAAAAGTGACATTCTTGGGCCAAACTTGACATCATTGTGAACATTGTGCTTCATTTAAGTTGTctaagtatgtatatataatatgtttctaAGTAAGTAACGCTTTAACATAGGTCAGCTATCAGCACTCCTGCCATACTAAATCAATGAATGATGTAAAAAGACAGGGCACGGGTAAGAgggtttttaaagaaagcaaccAAGTGCTTAACTTGATCTTTACTCCTTGCATCTTGTCAATGGTTATGCAAATCCTAAACTTTTATCTATGaagtattaaaaaacacaacacaacaccccACTGGTACATTCCTTTCAATCTGTGGTCTAGTCCTTAGATTTTTATACAGGTGCGCACTTTCAGTAGTGATGGTTGTCCCCTCTCCTCTTTTGCAGAGACTGTTCTAGTGAAATCATACAAAGCTCTGGGGCTTTCACAATTCTCTTCCTGTTGTGCTAGTAAACCAAATTGAAAAGCACAATGGAAATCAAGAGCATTACAGTATTAGCTATCCTTCTGGGATCTGGTGACAGttgaaagataaaatgtagcagaAACATCATCaacatttgttgttgttcatacTACTTAGCTTTCTTattagttaaaaacaaatacttcatACTCTCAAgcagttttaattttcattggGATTGCTGGAAAGGACATTGAACATGAGCCTTGATTATCTAAAAAGCATCTTAAATCGCAGCCTTGTTAGATATAAGGGGATAATTAGTGTGGGTTAATTCAGTACTGATTGATCAATGTAAACTGAGCCAGCTTGGTTGACTTACCTTCAGTCATACATCTTCATTAATGTTTGTTAAAACTGGgcattacaaattatttaatatccATGCTTTGGTTTTGCAATATTCTTTAACCTCAGGACCATTCCTCCCCTGCCATGACCTCAAACATCCAAAACTATGAAGACAAAAGTGGCTTAAAACCCCTCCCCAGCTCCCTTATCCCTCTGGGTGGAAAGGACACTGATACCTAATACCACATCTCAGTACATAATTAACAGGACAATTTCTTAAAACtcaagggaagaaaaaaaaaaaaaatctttatactTGTCTTCCACCAAATATACAGTTCTATAACAACATAATTAAAAGGAGGAATAACTACACAAGTACAATTAATACCTGGTCTCAAGTAGGGCAGGATAATTTAAACATATGACTTACATatgtttaaatcattttctttcGCTTCAAGTTTAAACTCCTTACCATCATCACTATGCTATGTAGCACACCAGTATATTTGACAGGAACTGGAGATTGCCATATACCTATAAAATGACCTACAGAGGCAGCACTCGGGCAACAACCCCTTGTTTCCCTTGCCAAAACCTGTAGTATCCAATTTGTGATTTGCCTTTCATCTCCAAATATATGCTGTAGCCAGACTAGGTGTTAAATATGGGAAGAAGCACAAACCCTAATATGTGatactatatttaatttttttgttttttgtttattggttcgtttcagtttttgtgtgtaGCAATTCAAAATCCATAACTTTAGTAGACTCCTTAAACATATAATGTTCTTCTGCTGAACTGGAAACAGAACCTGCATCTGAATTAATTTCCATTGTTAGAAAAAATACACTCAGTACATAGGTTTAAACTGTTCCTGTGTCACATTACATTAACTGTGCTGCGATCTATACTGTCCACAAGGTGGTGCACTGGATTGCTGTGAGGTGGCTAgttgtacttttaatattaacatGCTCTTGAGTTGTGTTAGAAACCAGATATAATAGTCTCAGTGCAATAACGTGTTTCATCCGTTTCCCCCTCAAGTCTTTATATACTTTACTACATGCACTttgtgattataattttttttccccagtggtAGTATTTCCAAAGGTCCATGGCTGGAGTTCATATGTTCTACTTCCTAAAGTCATGCTAATATTTGTTAAGGAACTACCATAATTACCTTGCAATGTGTGTGACATTATATTCAATATCCTCTACAACACTTTTGTCATTATTACATTCTaataaaactgtcaaaacaaaatcctgttgcagtgtgttgccaaataaacaataaagaaagGTTTTATatcagttaaataaaattatatgtaaTGGGAAAGAAGGCATGAATAATTTCAATTGAAAATGCACAAATCTTCTCtccaattataattattgctAATGCATACAAAGTTAAGTGTACCATGGTATTGTAcgtaataaaaaaactaaatcacatGGAATCTTGTTTCCAAATCTCTAATTTGTCATGTAAATTTACAGACCAAACAGAAATAACGAAACATATTTACAGAGAAGAATGAGAAATTGCACTTCAAACACTGATAAGAAGAGAGGATAATGCAGTAGTCCTAATTGAACAGTGAAACAGGACTGACTCAAGATCAC

Function

NR:

description
PREDICTED: solute carrier family 25 member 44-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15121 SLC25A44; solute carrier family 25, member 44

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007705 True 4639 mRNA 0.39 4 27324701 27334387

Neighbor

gene id symbol gene type direction distance location
AMCG00007706 crabp1,crabp1a,LOC105895658 coding downstream 17570 27293427 ~ 27307131 (-)
AMCG00007699 snx33 coding downstream 111937 27199643 ~ 27212764 (-)
AMCG00007695 LOC107560004,LOC107562294,LOC107727415,LOC107673268 coding downstream 843823 26479031 ~ 26480878 (-)
AMCG00007694 hmg20a,LOC102798875 coding downstream 1052251 26262988 ~ 26272450 (-)
AMCG00007693 NA coding downstream 1163187 26136652 ~ 26161514 (-)
AMCG00007713 NA coding upstream 184151 27518538 ~ 27532721 (-)
AMCG00007712 NA coding upstream 231780 27566167 ~ 27569541 (-)
AMCG00007719 NA coding upstream 333134 27667521 ~ 27672745 (-)
AMCG00007722 LOC106562765 coding upstream 538876 27873263 ~ 27879135 (-)
AMCG00007724 NA coding upstream 544873 27879260 ~ 27884397 (-)
G25655 NA non-coding downstream 67668 27254229 ~ 27257033 (-)
G25620 NA non-coding downstream 254602 27069886 ~ 27070099 (-)
G25617 NA non-coding downstream 295407 27028971 ~ 27029294 (-)
G25615 NA non-coding downstream 325155 26999306 ~ 26999546 (-)
G25446 NA non-coding downstream 1872679 25451763 ~ 25452022 (-)
G25697 NA non-coding upstream 19581 27353968 ~ 27355254 (-)
G25726 NA non-coding upstream 95370 27429757 ~ 27540936 (-)
G25730 NA non-coding upstream 103621 27438008 ~ 27451511 (-)
G25735 NA non-coding upstream 166563 27500950 ~ 27504962 (-)
G25746 NA non-coding upstream 219110 27553497 ~ 27554110 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other downstream 1253853 26053764 ~ 26070848 (-)
AMCG00007684 shf,LOC108430988 other downstream 1693109 25630792 ~ 25631592 (-)
G25422 NA other downstream 2059750 25264332 ~ 25264951 (-)
AMCG00007637 NA other downstream 3043137 24262690 ~ 24281564 (-)
G25026 NA other downstream 3352036 23971671 ~ 23972665 (-)
AMCG00007704 NA other upstream 23344 27357731 ~ 27370519 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other upstream 1560306 28894693 ~ 28921123 (-)
AMCG00007768 NA other upstream 1666662 29001049 ~ 29013947 (-)
AMCG00007817 NA other upstream 3857623 31192010 ~ 31246649 (-)
AMCG00007822 NA other upstream 4004329 31338716 ~ 31342792 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_16797241_16800469 S2544, SLC25A44A, SLC25A44, SLC25A44B coding CI01000026 null 16796555 ~ 16801123 (+)