AMCG00007706 (crabp1,crabp1a,LOC105895658)


Basic Information

Item Value
gene id AMCG00007706
gene name crabp1,crabp1a,LOC105895658
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27293427 ~ 27307131 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007706
GGATAGGGCTTTCAGGGGGAGGGAACTTTGTGACTCAGACCCAAGACAGTTGCTATAACTAGTGGCACAGATGAggcagaagcagagagagagagagagagagagagagaggggggtgagtgagagagagcgcaaagagcagagagcagagcaCCAAGCACTAAGAAGCAGGTTCTTTCTGTCACACTACAAGACACTGCGTCCAGACTCCTCATTCACAGCTCCAACACAGCCCTCAGCAGCTACAGAAATGCCCAACTTTGCCGGAACCTGGAAGATGAAGAGCAGTGAGAATTTTGATGAACTTCTTAAAGCTCTAGGCGTGAACGCCATGCTGAGGAAGGTGGCTGGGGCTGCTGCCTCGAAGCCCCATGTAGAGATCAGGCAGAACGGAGAGCAGTTCTACATCAAAACCTCCACCACCGTCCGCACCACCGAGATCAACTTCCACATCGGAGAGGAGTTTGAAGAGGAGACGGTGGATGGCAGGAAATGCAGGAGCCTGGCGACTTGGGAGACTGAGAATAAGATGTATTGCAAGCAGACGCTAGTAGGTGGAACCGGTCCAAAAACCTACTGGACAAGAGAACTGAGAGGTGATGAACTGATCTTGaggAACTTCTAG

Function

symbol description
crabp1a Predicted to enable retinoic acid binding activity. Predicted to act upstream of or within retinoic acid catabolic process. Predicted to be located in cytoplasm. Is expressed in several structures, including central nervous system; eye; integument; pleuroperitoneal region; and tail bud. Orthologous to human CRABP1 (cellular retinoic acid binding protein 1).
crabp1 Predicted to enable retinoid binding activity. Predicted to be involved in signal transduction. Predicted to be located in cytosol.

NR:

description
cellular retinoic acid-binding protein 1-like protein

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005215 transporter activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG:

id description
K17337 CRABP1; cellular retinoic acid-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007706 True 625 mRNA 0.52 4 27293427 27307131

Neighbor

gene id symbol gene type direction distance location
AMCG00007699 snx33 coding downstream 80663 27199643 ~ 27212764 (-)
AMCG00007695 LOC107560004,LOC107562294,LOC107727415,LOC107673268 coding downstream 812549 26479031 ~ 26480878 (-)
AMCG00007694 hmg20a,LOC102798875 coding downstream 1020977 26262988 ~ 26272450 (-)
AMCG00007693 NA coding downstream 1131913 26136652 ~ 26161514 (-)
AMCG00007688 NA coding downstream 1397826 25863022 ~ 25895601 (-)
AMCG00007705 s2544,LOC108438536 coding upstream 17570 27324701 ~ 27334387 (-)
AMCG00007713 NA coding upstream 211407 27518538 ~ 27532721 (-)
AMCG00007712 NA coding upstream 259036 27566167 ~ 27569541 (-)
AMCG00007719 NA coding upstream 360390 27667521 ~ 27672745 (-)
AMCG00007722 LOC106562765 coding upstream 566132 27873263 ~ 27879135 (-)
G25655 NA non-coding downstream 36394 27254229 ~ 27257033 (-)
G25620 NA non-coding downstream 223328 27069886 ~ 27070099 (-)
G25617 NA non-coding downstream 264133 27028971 ~ 27029294 (-)
G25615 NA non-coding downstream 293881 26999306 ~ 26999546 (-)
G25446 NA non-coding downstream 1841405 25451763 ~ 25452022 (-)
G25697 NA non-coding upstream 46837 27353968 ~ 27355254 (-)
G25726 NA non-coding upstream 122626 27429757 ~ 27540936 (-)
G25730 NA non-coding upstream 130877 27438008 ~ 27451511 (-)
G25735 NA non-coding upstream 193819 27500950 ~ 27504962 (-)
G25746 NA non-coding upstream 246366 27553497 ~ 27554110 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other downstream 1222579 26053764 ~ 26070848 (-)
AMCG00007684 shf,LOC108430988 other downstream 1661835 25630792 ~ 25631592 (-)
G25422 NA other downstream 2028476 25264332 ~ 25264951 (-)
AMCG00007637 NA other downstream 3011863 24262690 ~ 24281564 (-)
G25026 NA other downstream 3320762 23971671 ~ 23972665 (-)
AMCG00007704 NA other upstream 50600 27357731 ~ 27370519 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other upstream 1587562 28894693 ~ 28921123 (-)
AMCG00007768 NA other upstream 1693918 29001049 ~ 29013947 (-)
AMCG00007817 NA other upstream 3884879 31192010 ~ 31246649 (-)
AMCG00007822 NA other upstream 4031585 31338716 ~ 31342792 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034033 crabp1b coding NC_007118.7 CM002891.2 48319916 ~ 48342750 (+)