AMCG00007711


Basic Information

Item Value
gene id AMCG00007711
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27533469 ~ 27549963 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007711
ATGGCGGCCAGCTCGGATCGGATCCCCCCTCCCTTCCCCGAGTCTGAGGAGCAGGAGCCCGAGCCCCACACGGGACACGGCGACAGCGACGAGGGGGAAGATATATTCACAGGCAGTAGCAACCTGTCCGAACCCAGTAAGAACCCCCCTCCTCAGCCTATTGATGTCTTCAGTACAGATGAGGCCACCAATGTCACTACTACCAGCAACACAGTCACCAACTCCACTGATGGGACCAATGGGCTACAATCCGATAATGAAGATCAGGACATATTTGCGGAAGCCACCGTTGAGCTGTCGCTGGACAGTCCTCGCAACGACCGGAAGAATGAGCCGTCCAAGCCAGCAGCATCTATGCCTGCCCTCACCATCACCCCCAGCACTTCCAAAACTCAGCCCCAGACCCAGACCCTGGAGGAGctggaggaagaggaaagcGAGGACAAGTTTGACCTGAATATTGCAGTTACCAATCCAGAAAAAATCGggGATGGCATGAATGCTTATATGGCTTATAAAGTGTCAACACAGACCACGTTGCCAATGTTCAAGAATAAGACCTTCACAGTGAAGCGGAGGTTCAGCGATTTCTTGGGGCTGTACGAGAAGCTGTCTGAAAAACACTCCCAGAACGGCTACATTGTGCCTCCGCCGCCAGAGAAGAGTATATTAGGAATGACCAAAGTGAAAGTGGGCAAGGAGAACTCGTCCTCAGTGGAGTTTGTAGAGCGGAGACGAGCTGCGCTGGAAAGATATCTCCAGAGGATAGTGTGTCACCCGTCATTGTTACAAGACCCAGATGTCAGAGAATTCCTGGAAAAAGACGAGttacCTCGGGCGACGGGCACACAGACCCTGAGTGGGGCTGGCTTCTTGAAGATGATAAACAGAGCGACCGATGCTGTGAACAAGATGACCATTAAGATGAATGAGTCTGATATTTGGTTTGAGGAGAAGCTGCAGGAGGTGGAGAGCGAAGAACAGCACCTGCGAAAGCTGCACACTGTGGTGGAGTCGTTGGTCAACCACAGGAAAGAGCTCTCCAGCAACACGGCCATCTTTGCCAAGAGCCTGGCCATGCTGGGCAGCTCTGAGGACAACACAGCGTTGTCGCGGGCGCTGTGCCAGCTGTCCGAGGTGGAGGACAAGATCGAGCAGCTGCACCAGGAGCAGGCCGGCAGCGACTTCTTTATCTTCGCCGAGCTCCTCAGCGACTACCTGCGGCTGCTGGGCGTAAGCTGCTTTGACCAGCGTATGAAGTCCTGGCAACGCTGGCAGGATTCCCAGACGATGCTCCAGAAAAAACGGGAGAACGAAGCCAAGCTGCTGTGGGCAAACAAACCTGACAAACTGCAGCAAGCGAAGGATGAGATCTCTGAGtGGGAGTCCAGAGTCGCACAGTACGAGAGGGATTTTGAGAGGGTGTCTGCCAATGTCCGCAAGGAGGTGCTCAGGTTtgagAAAGAGAAAACCAGGGATTTTAAGACCCAGCTAGTGAAATATATTGAGTCACTTCTACATACACAGCAGCAGaatTCCTCAATTCTTACTCACCCTTGTCCTCAGGCTGCTGCATTCAACGGGGAGAGAAGGCACTGTAAAGCACCTACTACC

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17917 SNX1_2; sorting nexin-1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007711 True 1614 mRNA 0.53 15 27533469 27549963

Neighbor

gene id symbol gene type direction distance location
AMCG00007709 cpeb1,LOC106587658,LOC105013741 coding upstream 16767 27505666 ~ 27516702 (+)
AMCG00007708 ap3b2 coding upstream 28500 27478011 ~ 27504969 (+)
AMCG00007707 rbpms2,LOC107086560,LOC103368877 coding upstream 85031 27429902 ~ 27448438 (+)
AMCG00007703 psma4,LOC107738663,LOC107680153 coding upstream 177994 27351223 ~ 27355475 (+)
AMCG00007702 NA coding upstream 185118 27334925 ~ 27348351 (+)
AMCG00007710 NA coding downstream 3625 27553588 ~ 27566646 (+)
AMCG00007717 kiaa0101,paf,LOC106573334 coding downstream 38707 27588670 ~ 27592548 (+)
AMCG00007715 csnk1g1,LOC106573333 coding downstream 62709 27612672 ~ 27619156 (+)
AMCG00007716 csnk1g1,LOC107738908,LOC107594477,LOC107686826,LOC108271196,LOC103370372,LOC107559435 coding downstream 87254 27637217 ~ 27656565 (+)
AMCG00007714 rps17,rs17,LOC107389132,LOC106527967 coding downstream 113029 27662992 ~ 27667229 (+)
G25699 NA non-coding upstream 177392 27355874 ~ 27356077 (+)
G25677 slc25a44,s2544,LOC108438536,LOC108432728,LOC107673271 non-coding upstream 203267 27328947 ~ 27330202 (+)
G25674 NA non-coding upstream 226403 27303848 ~ 27307066 (+)
G25658 NA non-coding upstream 251359 27280657 ~ 27282110 (+)
G25645 NA non-coding upstream 276471 27254101 ~ 27256998 (+)
G25709 ppib,LOC102792920,LOC107680152,LOC107577199,LOC107754356,LOC107673286 non-coding downstream 16732 27566695 ~ 27569353 (+)
G25753 NA non-coding downstream 20580 27570543 ~ 27571491 (+)
G25819 NA non-coding downstream 520383 28070346 ~ 28078121 (+)
G25827 NA non-coding downstream 554639 28104602 ~ 28109590 (+)
G25984 NA non-coding downstream 1181167 28731130 ~ 28731401 (+)
AMCG00007640 NA other upstream 3033819 24476487 ~ 24499650 (+)
AMCG00007631 NA other upstream 3338988 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 3863390 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 4339948 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 4393948 23133811 ~ 23139521 (+)
G25822 NA other downstream 533859 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 888681 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 1132208 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 1350095 28900058 ~ 28911566 (+)
AMCG00007769 acsbg1 other downstream 1453132 29003095 ~ 29006379 (+)

Expression


Co-expression Network