AMCG00007713


Basic Information

Item Value
gene id AMCG00007713
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27518538 ~ 27532721 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007713
gatctgcacagttctgcgcagatctgcacactgCCGCCGATCCcgttggtggagcagcgcagatctacGCAGAGGTGCGGACATTTGCGCTACAGGAATGCGACCTCAGTCTATACTCTGTCATTTCTTAACCCCAAAAAAGCGCGATCGTACGCCCTGGCCATTTAAACCAGCATGCCATTATTGAAAACCTCGTCTCTGAATTTCGATGACTAGTCGTGTGTTGGAAGGAAGGTTTGCGGATCCAGACCGAGAGCCACTGCTGGGGAACGCAGATGTTACCCCCCCCGAGTCGGACACAGACGCAGGGGAGGTCGCTTATGAACGGATGAAGAATAAGAGAAACTCAGATGGAGGGGACGGGCGAAATGCGCTGTCATTCGAGGAGGCCGTGGAACAAGCAGGTTTTGGTTTATTCCATGGCATCCTGTTGGTGGTGTGTGGATGGGCCAATGCCAGCGATGCCGTGGAGATCCTGTGTGTGTCCTTCCTCCTTCCGACTGCACGCTGCGACCTACAGCTCAGCTCCTCTGATATAGGGCTTCTCACAGCCAGCATCTTTCTTGGGATGATGATTGGAGGGTATGTGTGGGGCTACCTGGCTGACCAGCAAGGGAGAAAGAGGGTTCTGGTGATCTCCCTCTCGGTCAATGGTGTTTTTGGTGCTTTGGCAAGCCTGGCTCCCAGTTTCTGGCTGTTCCTCCTACTGCGCTTCGTCAGTGGCATTGGGGTGGGCGGCTCCATTCCGGTCATCTTTTCCTACTTCTCTGAGTTCCAGCCGCGCTGCAGGAGAGGAGCTATGATCAGTGGTCTGGCCACCTTCTGGATGGCTGGAAACATACTTGCTGCAGGCCTGGCTTGGCTGGTGATTCCAAGTACAGGTCTGAGGTTTCAGCTGGGATCCCTGGACTTCCAGAGCTGGCGTCTGTTTGTGGTACTGTGCTCGGTTCCCAGCATCTCCTCAGCCTTTATATTTGGGCTTTTCATGACAGAGAGTCCCAAGTTTCTTATGGAGGCTGGGCAAGAAGCTGAAGCCATTGAAGTGTTTCTGAAGATGTTTACATTCAATAACCGAGGCAGTGCCAAAGCTTTTCCATGGCACTCTCTGGTATTGCAGGAGCCAGGACTTCCTCATCAGATATCAGGATTACAGAGCATCACCATGTGTGATAATGAAGAAATTGTTATGGACACTAAACTACACCGGCtgacacacaaattaaaacaggTGTTGAGCCCCATCAGTAAAATGTTCATCACACCACTTACATCACGAAGCATCATCCTATTCATCCTGTTCTTCTGCATATCATTTGGGTATTACGGCCTGTGGATGTGGTTTCCTGAGCTCTTCAAGAGGGTGCAGAATGGAGGCTCTATTTGCTCCAATGTGTCTCGCCCCTCCAGCACTGTGTTACCCCAGAATGATACCTGCTATCCCATCAAAACCGAAGTGTATAGGGATGGATTTATTACAGCAGCTGCCAATCTGCCAGGCAACATCTTGAGCATCCTTCTGATGGACATTGTGGGAGGAAAGATCTTGATTTCCTGCAGCCTCCTGGTGTCAGGAATCAGTGTCTTCTTCATCTGGATGGTGAAGACCAAGCTGCAAAGCCTGGCCATGTCATGTGTGTTCAGCGCAGTCTCAGTTATCTCCTGGAATGCCCTGGATGTCATTAGTACAGAGCTCTACCCCACCCAGCTCAGGTCTTCTGCTCTTGGCTTCTTCACTGGTGTGGGCCGAGTGGCAGCCATCCTTGGGAACATGGTTTTTGGCCAACTGGTGGACAGCAACTGTGCAATCCCAATCCTCCTGGTTGCAGTTCTTCTGTTTAGTGGAGGACTGGCTGCAACAAGACTGCCAAAGACCAAGCAAATAGCGCTCACCTGATGGCCACATTAAAGCAATTCCATTACACTGATTTGTCTTGTAGAAAGCTCTTGTCCAAGGTTTTATTTCATCTGTGCCTCTAACACAATCTTAATAGTGCCACTGAAAACTGTGGATCTGTATCAATTAACAGGGAGACCGTTCTGAACAGGGTGTGGGGGGTTAAACTACAAATACAGCCACACTGAAGTTTGAATATTTTCTTTAGGTGGGGGAGACATACAAATTATCCAAAGTAAAAACATTCCATTTGagggattgtttttgtttagtaatAAGTTCAGTTAACATTAGGATATGAAGCCACATGACAGCCATTTAAAGGGAATAGGGCATTGGAGGCATTTGCATCCCCTTGCGAGTCCCCTCCACAACACGTGTATACTCTACATACAAGCCTAACTAGTTTCCAGTAGGCATCTACAACATGCACAAAGCACTTTGGTTAGCAACCTAATCAACGGGCTGCACTCCAGGTGGCAGAACCCTTTTAccacaaatgttacattttaataaaatcacaatagttaaaaa

Function

GO: NA

KEGG:

id description
K06258 SV2; MFS transporter, VNT family, synaptic vesicle glycoprotein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007713 True 2428 mRNA 0.49 14 27518538 27532721

Neighbor

gene id symbol gene type direction distance location
AMCG00007705 s2544,LOC108438536 coding downstream 184151 27324701 ~ 27334387 (-)
AMCG00007706 crabp1,crabp1a,LOC105895658 coding downstream 211407 27293427 ~ 27307131 (-)
AMCG00007699 snx33 coding downstream 305774 27199643 ~ 27212764 (-)
AMCG00007695 LOC107560004,LOC107562294,LOC107727415,LOC107673268 coding downstream 1037660 26479031 ~ 26480878 (-)
AMCG00007694 hmg20a,LOC102798875 coding downstream 1246088 26262988 ~ 26272450 (-)
AMCG00007712 NA coding upstream 33446 27566167 ~ 27569541 (-)
AMCG00007719 NA coding upstream 134800 27667521 ~ 27672745 (-)
AMCG00007722 LOC106562765 coding upstream 340542 27873263 ~ 27879135 (-)
AMCG00007724 NA coding upstream 346539 27879260 ~ 27884397 (-)
AMCG00007726 LOC102788062,LOC101156874,LOC100699863,LOC102296031 coding upstream 524714 28057435 ~ 28063864 (-)
G25735 NA non-coding downstream 13576 27500950 ~ 27504962 (-)
G25730 NA non-coding downstream 67027 27438008 ~ 27451511 (-)
G25697 NA non-coding downstream 163284 27353968 ~ 27355254 (-)
G25655 NA non-coding downstream 261505 27254229 ~ 27257033 (-)
G25620 NA non-coding downstream 448439 27069886 ~ 27070099 (-)
G25746 NA non-coding upstream 20776 27553497 ~ 27554110 (-)
G25748 NA non-coding upstream 30007 27562728 ~ 27563018 (-)
G25749 NA non-coding upstream 30519 27563240 ~ 27563690 (-)
G25750 NA non-coding upstream 31318 27564039 ~ 27564709 (-)
G25768 NA non-coding upstream 129503 27662224 ~ 27667072 (-)
AMCG00007704 NA other downstream 148019 27357731 ~ 27370519 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other downstream 1447690 26053764 ~ 26070848 (-)
AMCG00007684 shf,LOC108430988 other downstream 1886946 25630792 ~ 25631592 (-)
G25422 NA other downstream 2253587 25264332 ~ 25264951 (-)
AMCG00007637 NA other downstream 3236974 24262690 ~ 24281564 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other upstream 1361972 28894693 ~ 28921123 (-)
AMCG00007768 NA other upstream 1468328 29001049 ~ 29013947 (-)
AMCG00007817 NA other upstream 3659289 31192010 ~ 31246649 (-)
AMCG00007822 NA other upstream 3805995 31338716 ~ 31342792 (-)
AMCG00007835 LOC107594750 other upstream 4272178 31804899 ~ 31816151 (-)

Expression


Co-expression Network