AMCG00007717 (kiaa0101,paf,LOC106573334)


Basic Information

Item Value
gene id AMCG00007717
gene name kiaa0101,paf,LOC106573334
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27588670 ~ 27592548 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007717
TGCAGAACACTGCGGTGACGTGTGCGGTGACGTGTGCGGTGACGTCGGAGGAACCTGGTCGAGATTTAAACTCAGGCGGGAGAGTTTCAACTCATTTGCTCTGTCTGTCTTGCAGAAAAGACAGGAGGTGTGTTTCCTGACAGACTAAGCGTGCATCTACTGCTTTGAAATAATACCAATTAAAATGGTGAGGACAAAAGCAGACAGCGTGCCGGGGACGTACAGGAAAGCGGTGGCGGCTTCAGCACCCCGGAAGTCTCTGGGAGCCTCGAGTTCCGCCAACACGTCCAGCAGCGCCCAGGCGGGCACCCCGTCAAAGGGAAAATATGCGGGGGGTAACCCTGTGTGCCCACGGCCCACACCTGCTTGGCAGAAGGGCATTGGGGATTTCTTTGGTGGCCCCAGCCGCCGACCAGAGAAGGAGAACCAGCTGCCCTCAGATGATGAGGAAGCGGGGGGCAGCGGAGTCGGCAAAGCTCCCAGAAAAGCCCGGCCTTTGCCTGATGAAGACGAAGCTGAAGAGGACTGAGCTGTCTtcctttctttactttttttttttttagatctgAAAAGCCATGATTAATACTTGAAAAGGCTGGGTTTTTAGTACCGTGTAcatctttgtatatatatatttttttttgtacagaagtttaataaaaaaaatctaaatttgtgCTTGTTTGTATCCTTAAAGTCCCCAAATGTCTGTGCTGTGAATTCCCGTTGTCCTTTTTGCCCCACTCAACGAATGTTCAGCTCTTCATGCATGCTAACTCCTTAATATAGCTAGGTGTCTGGCAAGCTGTTGGAAGGTTTCAATAGTGCGTTACTAGTGTTTTGTAAGTTTAGGTTTCCCAGTCTTTTATGTAGCTTCTTCCCCCTCTTTGTTTAGGGTCACTAGAGGTTTTAACAATTGTCAGGTGATTTGAGATGAATTCAGATCTGTGGCGTTTTCAAAGTGTATGAACCACTAATCAAGAAAGGAATACAGGCTGAGTTCTGTTCATCACACCTCACTTgaggtattttaatttaacttttttagcATTGCCTGTAGGTGTAGAGCAGTGTACATGGGTGTATATATGGCCACTTTCCAGTGTGAAAGCCTTTTTCTGGACTGATGATAGTGGTTAAAGGAAACCTTTAATGTATATCTTTTTGACTTCTAGGACTACCCAAGATACTTACCATCtgctttgatctatagcttcccttttccatgtcattccTGCCAAGTGTGTGTAACCTATCTAGCCTCAAGGCTACACTTAGTTTACATGTGCCTTAAACATTcttatactataatatattgGCTTGTATAATGGGAAC

Function

symbol description
paf Acts upstream of or within central nervous system maturation and ventricular system development.

NR:

description
PREDICTED: PCNA-associated factor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007717 True 1335 mRNA 0.45 4 27588670 27592548

Neighbor

gene id symbol gene type direction distance location
AMCG00007710 NA coding upstream 22024 27553588 ~ 27566646 (+)
AMCG00007711 NA coding upstream 38707 27533469 ~ 27549963 (+)
AMCG00007709 cpeb1,LOC106587658,LOC105013741 coding upstream 71968 27505666 ~ 27516702 (+)
AMCG00007708 ap3b2 coding upstream 83701 27478011 ~ 27504969 (+)
AMCG00007707 rbpms2,LOC107086560,LOC103368877 coding upstream 140232 27429902 ~ 27448438 (+)
AMCG00007715 csnk1g1,LOC106573333 coding downstream 20124 27612672 ~ 27619156 (+)
AMCG00007716 csnk1g1,LOC107738908,LOC107594477,LOC107686826,LOC108271196,LOC103370372,LOC107559435 coding downstream 44669 27637217 ~ 27656565 (+)
AMCG00007714 rps17,rs17,LOC107389132,LOC106527967 coding downstream 70444 27662992 ~ 27667229 (+)
AMCG00007718 NA coding downstream 81214 27673762 ~ 27679214 (+)
AMCG00007723 znf609,LOC796180,LOC107748266,LOC107559441 coding downstream 161665 27754213 ~ 27758823 (+)
G25753 NA non-coding upstream 17179 27570543 ~ 27571491 (+)
G25709 ppib,LOC102792920,LOC107680152,LOC107577199,LOC107754356,LOC107673286 non-coding upstream 19317 27566695 ~ 27569353 (+)
G25699 NA non-coding upstream 232593 27355874 ~ 27356077 (+)
G25677 slc25a44,s2544,LOC108438536,LOC108432728,LOC107673271 non-coding upstream 258468 27328947 ~ 27330202 (+)
G25674 NA non-coding upstream 281604 27303848 ~ 27307066 (+)
G25819 NA non-coding downstream 477798 28070346 ~ 28078121 (+)
G25827 NA non-coding downstream 512054 28104602 ~ 28109590 (+)
G25984 NA non-coding downstream 1138582 28731130 ~ 28731401 (+)
G26103 frmd5,LOC107691145,LOC107556247,LOC103373640,LOC570903 non-coding downstream 1481908 29074456 ~ 29082381 (+)
G26146 NA non-coding downstream 1719075 29311623 ~ 29311944 (+)
AMCG00007640 NA other upstream 3089020 24476487 ~ 24499650 (+)
AMCG00007631 NA other upstream 3394189 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 3918591 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 4395149 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 4449149 23133811 ~ 23139521 (+)
G25822 NA other downstream 491274 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 846096 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 1089623 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 1307510 28900058 ~ 28911566 (+)
AMCG00007769 acsbg1 other downstream 1410547 29003095 ~ 29006379 (+)

Expression


Co-expression Network