AMCG00007720 (gramd2,LOC103030744,LOC107748265,LOC106562775)


Basic Information

Item Value
gene id AMCG00007720
gene name gramd2,LOC103030744,LOC107748265,LOC106562775
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27841088 ~ 27855434 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007720
GCAGGCCAAAAACAATGACTGAAAACCAGGAGCTTAGTGAAGACCTTGGCCTCCTGCCCCCCTCGAATGTGGCCGAGTCCACCAAGGAGGATGAGAGTCAGAGCCAGCCACATTGCAGGGTTCAGGTGATAGATTCTCTACCATACGAAGATGTGAAGAAATGTTACAGAGGCTCAACAGTGAATAAGTATAACTCTCAGTACCACAAGCTGTTCCAGAGTGTCCCCATGGAAGAGGTGCTGATGAAAGTGTACTCCTGTGCCCTCCTCAGAGATATACTTCTACAAGGACGTCTCTACATTTCCAAGAACTGGCTGTGTTTCTATGCCAACCTCTTTGGGAAAGACATCAAGGTAGCCATACCTGTAGTGTCAGTGCGCCTGGTGAAGAAACACAGAACGGCCGGATTGGTTCCCAATGGGCTCGCCATCACCACTGATGCTGGCCAAAAGTATGTATTTGTGTCGCTGCTATCCCGTGACAGTGTTTACGATGTGTTGCGGAGAGTCTGCACCCACCTTCAGGTCAATGGAAAAAAGAGCCTCAGCCTAAAGCAGTACACTGAGGAGCCCAGTTCCTTATCTCTGGACGAGTTCCCTGTCCCTGACGAGTTCCCGCCAGTCCTCAAGTGGAGGCGGAAACCTTCAACGGCCTCCGTGTCCGCCTCCATGCCCGACCTCCTTGGCAACTCCACCAGCAGCCTGAGTGCCATCGACACCCCCTTCCCCACAGACGAGCCACTGCAAGAAAGAGCCCTGGAGACCGAGAAGATACTGTTGACAGAGTCTGTTCCTGAACTCGGCCAAATGGAATACCAACTTCTCAAATTCTTCATCTTGCTCATCATTCTGCTCATTGTGTCGTCCTGCTACCTTGCATTCCGAGTGTCCAGTCTGGAGCAGCAGCTCTCCTTCTTAAACACAAACCCTGTCCTGCCTGTGACAGAGAGGTAACCCCCGCTCTGGGCAGTGTCAACATCTGATGGGGTGCACATTTCCAGGACATTCCCGTCTGCCACTGCTTgatgacaacaaaaacagacttgatatttatttaaactttttcagTGTATGAAGTCTTGATAGAACccagctatttattttaaaacaaaaacaagttaaaattaGTTTATAAAAACAGCTGCTGAGTAAAAATGGaacacatacaataataatgcaatttaatttctgtCCTGGACATGAAGCAATGTTCTCCGGGCAGCAGCACAAACCAACATGGACTGCTCAGTCTAAACTGCTTTAGATGGTCAGATGTTGAATAACAAACCAGAATAGGACTAACTGAGTGAAGAGGCCCACACTCTTCTGAAGACCGTGAAGATTCCCGTTTTTGAAAAGCACCAACGCCCTCAATTTATGTACTTTATGCCGTCTCACCTCCCAAAGGCACTGTACAGTTTTGAGAAATTCTCATCCATCATTTCAACCACAGTTTCAGAAGAGGTGACCTTTTGAGTACTGCAAGAAGCTCTGCATCTCAGGATACCACTCAGAGTCTGACCTCTATTTTAACACCACGGCAGCAGAAGAATGTTGCAATGTCAGCTACCGGTCTAGTCTTCTGTtcgaatacctgcagctttgGAGATGGAGAGGCATGAGGTCAACTTCTAGGAAACCCATAAAGTAGAGTGAGTAGTGATCACTCCAATGCCATTCCTGCTGTCCTGGACCTTGATTAATTCCTATCCACTACAACCCTATACCTCACACTTGGGGTCAGTGGGGGAAAGCTGTCTGAAGCGGTTCAGGTCTTCACAACAAATCTCATTGTAATGGTCGTTTGGGAGATAGCTCCTAAACTGACACGTTTGGCCTGAACATCATTTGATTGATCAGTACATGGCTTCTTTACttgtaaatcacaaaataatgaacCTCATGTGAATTGGTAGTAGGGGGTCAGCTCTTGCTATCTCAGAAGGAGATGCACAGATTGCTTGTGTATTTTATAGGAGAAAATATGACCGCAGATATTAAATGACTGAAGTCTATTCATGAGTAACCTCAGGAGTTACCTTTGATAAGTGCATGAATGCTCTTAGTTGAAGAGCAAACCATCTCCATACTACAGATGTGTCTACTGTGTAGCAATTAGAGAACTTGTTGCATGGGATTTATAGATCTCATCAATGCCTATAGGAAAAATCTActacaataattgtatttactacAATTTTCATTGTACTTTTGCTGTCCTCACACCAAAGCAGAGTACCTTGCAGGAGCCCGCCACACTAGACCAtcactggaaatgttttatgtgaCTTCAGTCTAGCCTGTAGAATTACTGTTACATACAACATGTATTCACAGCATTACTTCTCCAAGTATTTAATAGGGATCTGTAATGCAAACAATTGACTGAATTAGGAAATAATTTCAAGTAATACAAATTCAAGAACAAATTGTAATGAAACCACATTGTTAGGCTTCATAGAGGCTCCTCAGACAGCTTATGAGTAACTATAAATGTGGCCATTACTGTCACAGTAATGTGCTGTGAGAAGGTAAATGTGTAGTGGTTTACACACAATTTCAAAGTCAAGCATTTCAGTCTGCATGTGCTGGTACTGACAGATGGAGTTATGAAGTGATTCTGAAATCAAAGTTGTACATCTAGAGCACATGAGATATGAAACGAGTGAAATGTACAGTGTGCTTTTTAACgatgtctgtatgtatttgcGTGCAATTTTGTATTGGATGTAGGAGGCACTTTTTTGCTGGGGATCAAGGTGGAGTTCACTTGGCTTTTTGTAGTCGGACAATTTTTTAAGCAGTATGATTGTAGAATTATACTTTGACTACAGCAGTTTGACTGTAAAACAATAGTGACTAATAAACAGCCTTTTTATCCTGGTG

Function

symbol description
gramd2 Predicted to enable phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in endoplasmic reticulum-plasma membrane tethering and regulation of store-operated calcium entry. Predicted to be located in endoplasmic reticulum and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in organelle membrane contact site. Predicted to be extrinsic component of cytoplasmic side of plasma membrane and intrinsic component of endoplasmic reticulum membrane. Is expressed in cerebellum; cerebral cortex; hippocampus; retina inner nuclear layer; and retina outer nuclear layer. Orthologous to human GRAMD2A (GRAM domain containing 2A).

NR:

description
PREDICTED: GRAM domain-containing protein 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007720 True 2885 mRNA 0.44 11 27841088 27855434

Neighbor

gene id symbol gene type direction distance location
AMCG00007721 znf609,LOC107745096,LOC107695009,LOC107680896 coding upstream 27857 27795968 ~ 27813231 (+)
AMCG00007723 znf609,LOC796180,LOC107748266,LOC107559441 coding upstream 82265 27754213 ~ 27758823 (+)
AMCG00007718 NA coding upstream 161874 27673762 ~ 27679214 (+)
AMCG00007714 rps17,rs17,LOC107389132,LOC106527967 coding upstream 173859 27662992 ~ 27667229 (+)
AMCG00007716 csnk1g1,LOC107738908,LOC107594477,LOC107686826,LOC108271196,LOC103370372,LOC107559435 coding upstream 184523 27637217 ~ 27656565 (+)
AMCG00007727 myo9a coding downstream 63524 27918958 ~ 27921640 (+)
AMCG00007725 NA coding downstream 109912 27965346 ~ 28055857 (+)
AMCG00007733 LOC107745566 coding downstream 511834 28367268 ~ 28378252 (+)
AMCG00007736 mpi,LOC106560745 coding downstream 559531 28414965 ~ 28421296 (+)
AMCG00007734 NA coding downstream 576547 28431981 ~ 28438035 (+)
G25753 NA non-coding upstream 269597 27570543 ~ 27571491 (+)
G25709 ppib,LOC102792920,LOC107680152,LOC107577199,LOC107754356,LOC107673286 non-coding upstream 271735 27566695 ~ 27569353 (+)
G25699 NA non-coding upstream 485011 27355874 ~ 27356077 (+)
G25677 slc25a44,s2544,LOC108438536,LOC108432728,LOC107673271 non-coding upstream 510886 27328947 ~ 27330202 (+)
G25674 NA non-coding upstream 534022 27303848 ~ 27307066 (+)
G25819 NA non-coding downstream 214912 28070346 ~ 28078121 (+)
G25827 NA non-coding downstream 249168 28104602 ~ 28109590 (+)
G25984 NA non-coding downstream 875696 28731130 ~ 28731401 (+)
G26103 frmd5,LOC107691145,LOC107556247,LOC103373640,LOC570903 non-coding downstream 1219022 29074456 ~ 29082381 (+)
G26146 NA non-coding downstream 1456189 29311623 ~ 29311944 (+)
AMCG00007640 NA other upstream 3341438 24476487 ~ 24499650 (+)
AMCG00007631 NA other upstream 3646607 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 4171009 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 4647567 23189460 ~ 23193521 (+)
AMCG00007585 star5,stard5,LOC104953929 other upstream 4701567 23133811 ~ 23139521 (+)
G25822 NA other downstream 228388 28083822 ~ 28094741 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 583210 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 826737 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 1044624 28900058 ~ 28911566 (+)
AMCG00007769 acsbg1 other downstream 1147661 29003095 ~ 29006379 (+)

Expression


Co-expression Network