AMCG00007722 (LOC106562765)


Basic Information

Item Value
gene id AMCG00007722
gene name LOC106562765
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 27873263 ~ 27879135 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007722
atgccAGGTGGATTCGGTCTGCCTGCCTGCTCCCCTCTGCCTAGGAGAATGGAACCGGTGGTGCTGAGCTACCAGGACAGTTTGCTGCGGCGCTCAGACGTGGCCCTGTTGGAGGGACCCCACTGGCTGAACGACCAGGTGATCGGGTTCGCCTTTGAGTATTTCGCCACTGAACGCTTCAAGAGCCTGAGTGGAGAGGCATGCTTCATCAGCCCTGAGGTGACACAGTTCATCAAGTGCACTTCCAGCCAAGAGGAGCTGGCTCTGTTCCTGGAGCCGCTGGGGCTGCCCCGCCGCCACTGGATCTTCCTCGCCGTCAACGACAACTCCCACCAGACAGCCGGTGGTACCCACTGGAGCCTCCTGCTGTACCAGCGAGACCGCGGCCACTTCGCCCACTACGACTCCCACAGCGGCAGCAACTCCCTGCATGCCCGTCGCATAGCCAGCAAGCTGGAGGCCTTCTTGGGCACTGGGGGAAAGGTCCCCTTTGTGGAAGAGCCAGCCCCGGCCCAGCAGAACAGCTACGATTGCGGCATGTACGTCATCTGCAACACCGAGGTGCTCTGCGAGAACACGGGGCCCGAGGCAACCGCCCCCCCCCTCACGCAGCTCATCACCCCCAGCTACATCACACAGAAACGGGCAGAGTGGACCAGGCTCATCCAGAAACTCTCCAAGGAGTGAAGCACATGGGGAGCTGCACACCAGCCCCGCCTTTCCTCCTAGAATTGCTAGCATGAGCATTTATTATCAGAGCCCTGAATCAATTCAAATAAGAGCATTTGTTTAAAGAAGAAATAACTTGGGAAATTTGTATACATGGTATTGACACAGGGTAAGATGGGGAGGCTTAATTATGTCCATTGCTGGGCCCTTGGGGTTTCTAACCTCTCTTGCACTTGAGATTTAATACTGAATAGTAAAAAGCTGCATACCAGGGACAGATCCTGCCCATTGTCCAAACTGCAAATCCAGACAGTGTAAGTTTCGTAAGGCGTTGTTTTGTGccaaagcaaaagcaaatgtGCCTCATTTTTCATCGCAGAATCACCATATACTTTTTTGTGTTGAATTTAAACTGTTTGTTTaggtatattttatatactgtactgcataAGGCACAGTGATACTCTTCACAACTGGAGCCTGCATTTGATAGAAAGGTAGTGAAACTACAGGACATCCAGTGATGAGGAAGCTGGGAAACGCGGTCTGTCACACACTGGTATTTCAATGCGTGTGGTCATTGATTGCCAACACAAGGACTCAACCGGCTATCCTGTTGTTCAGTTGCTAGTATCATTGGAGCCATATCTGCAAAGGACTAAAAGCAAAACCATCCATTAGCAAGGAGAGACATGGAAGTGATGAGAGAATGCTTAAGAGTTTCAGGCCATTGTTGACAACATACAGTTTCCTGATAGACTGGAGTTGTTATCACGCTGTTTAAAGCTTACGTGTTGTATGTTTACAAGGAATATTGCTCAGGGTCATATAAATGTCACATAAATTTCAGAATTGAATTGACACAGAGAAATGTTATGCTATCAAATATGTTATATCCCTAAAAGTGTAACAACTTTACTTTCTGGATGAGGTCtttgtaaatatacacacacaatcaattgattatttttccaGATTCTTCGTACTCTTCCAAACAGCATTGTTttccaaatcaaaataaatataagcagtctttttctctttccaagGCTTGGAAAGTAAAagcactccctctctctccccaaatCTGATTGAGACAACCAGACATATCATCCACAGAGCAGGTGGTCCTCCATTATACTGCAAGATTTAGGAAGTGAGTTGGCGTGCAGGTAGGAGGGGTGGTTAGGAGACCTAATAGGCAGAGAGTATAATCACACATTACCAGTCACTAGAAGGCTGTTTTATAGATGGACCTAACCACATTTTTCTGACTAGATAACATCACACATCAGAAGTGCTTTTGAATCTTAAAATTCCAATGGAATCTAATGTTGTAAAAGTGATGATCCCACGATGATCTATTTTCTAGTATGGCACAGTTTTCCCCATATAAGATGACTGTTACTTTTGCTTTCTTACTTGTTTACTGCAGAACCACCAGTTTTAAATAATGGGATCTGGAAGAGACCTCTGAATGTCATTGACCTCATTTACTTACTTCAGACATGGTCTTTTAGCCCTGGAATTTACATTTGAAGTCAAACCTCTGTAGTTTTATAgtctttcttattattattattgttgttgttttttatgttattgtgaATCATTTGACAGTGCAGTCTCTCTGATCTAATTTCTGAACTTCATTTTCTCACATTCAGCTTTGAGTTATTTATTGGCTGATGTAGTCACTGAGAAGGGTAAATTGTACTCCAAGCAGGGACCAGCAACAGAGACTCCACAAAGATGCAAACTGTAAGATATGGAAAACAGTGTAAATGAGAATGAGGAATGCAAATATAACCCTCACTCTTTAAAGCATGTCAATATGCAGGTGTCATACTAGTTTCATGCTTTTGTATCTCTCTCGCGCCTTAAGCTGCAGCTGTACTGTGTATAAAGTTCTGCAGTGTCCGTGAGGTGTTCTGGAAGCTGTTTCTGCATCGCTGATCTGACAGCTATCACGGCAAATtcaacatacatacatttttaattgaaaaagctTATATTTCATACTTTTGGATAATCTGAAATGAGACAATGGaagcattgaaaaaaaatatgctttcaGGAATGTATCAACAACAGGGAAATAAGTCATGTAGAAGCAGGCTGTCAAGTCACAGTTTTTGATGATAAGACTTAGTACAGTGCATATACATACTACAGATGATTAATTGGTTCATTCCACCAGAGCAGAGtccattatgaaaataatttctCTTGGCACTCTTGgttcagttacatttttgttcttttgctgTTTTGGACCATATTAGGCTGGATCTGATAAGTGAAAATTTATTTAGGCAAGCACTCAAATGCTACAAATACCCATTAatcacagcacaacactgataTTACTTCAGTTCAGATTGCTGTGATATTTTGCTCCCAGACTTGGAGAAGGCAGTAGCTCCCACAGGTGATGTAAGATTTAATCCTGTGCTGTTTCAGATTTGTCTCAGTATGGAGGACTTATGTATTGCTGATACTGCACTTGTTACCCTGTGACACCAATGGGGAAGAAAGAAGGAGCAAAAGCCAGGTGGAGCCTGGAACACCATGAAATGCAGTGACAGCATTAGACTCGGAACGCAAAAATGATGCATCACTGCTGTCACTGAATTCACAGGGTGGTTGAAACTCCAACTGGACAATATCCTGAAACAACCTGAAGCCCAATATTCTGCTCTTGTCCTGGTCATGTTTGGCCACCGGTATTGATGGAAAGTAATGATTTTAAAccacagaatttttttttttattttagattccATGCTGCCATCATCCATGCAAGCACTGTGTTGGATCTCGCTTGAGGTCTAATGGTAGATTCATCATAGCCAGAATGAACGCTGGAATGTGAACCGCATCACATCGTGCATTTAATGACTGCAAGAACTTTAGAAGTTCCAGAGAAAGAATGCTTTAAGAGGCCTTGCAgggaaagggaaataaatgacTGCCTTTAATAGTgaaatatattgattgtttaaaaagaaaaacagtagaGTGTTCACCTCTACAGTGTATTTTCTCAGTGTTTAATAAATTTGCTTTCAAGCTTGTTTGCAGATtactgttttctattttttaaggtttatttattttatgaatgctGCAAAAGTAACACAAATGTACTTGGCAAAACCATTCTTATCCAAA

Function

NR:

description
PREDICTED: sentrin-specific protease 8-like, partial

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K08597 SENP8, NEDP1, DEN1; sentrin-specific protease 8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007722 True 3843 mRNA 0.42 2 27873263 27879135

Neighbor

gene id symbol gene type direction distance location
AMCG00007719 NA coding downstream 200518 27667521 ~ 27672745 (-)
AMCG00007712 NA coding downstream 303722 27566167 ~ 27569541 (-)
AMCG00007713 NA coding downstream 340542 27518538 ~ 27532721 (-)
AMCG00007705 s2544,LOC108438536 coding downstream 538876 27324701 ~ 27334387 (-)
AMCG00007706 crabp1,crabp1a,LOC105895658 coding downstream 566132 27293427 ~ 27307131 (-)
AMCG00007724 NA coding upstream 125 27879260 ~ 27884397 (-)
AMCG00007726 LOC102788062,LOC101156874,LOC100699863,LOC102296031 coding upstream 178300 28057435 ~ 28063864 (-)
AMCG00007730 NA coding upstream 205551 28084686 ~ 28099269 (-)
AMCG00007728 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 coding upstream 225333 28104468 ~ 28128157 (-)
AMCG00007729 NA coding upstream 254403 28133538 ~ 28182525 (-)
G25768 NA non-coding downstream 206191 27662224 ~ 27667072 (-)
G25750 NA non-coding downstream 308554 27564039 ~ 27564709 (-)
G25749 NA non-coding downstream 309573 27563240 ~ 27563690 (-)
G25748 NA non-coding downstream 310245 27562728 ~ 27563018 (-)
G25746 NA non-coding downstream 319153 27553497 ~ 27554110 (-)
G25968 NA non-coding upstream 797705 28676840 ~ 28702537 (-)
G25972 NA non-coding upstream 817330 28696465 ~ 28699849 (-)
G25985 NA non-coding upstream 853629 28732764 ~ 28732994 (-)
G25987 NA non-coding upstream 854977 28734112 ~ 28734449 (-)
G26092 NA non-coding upstream 1152275 29031410 ~ 29049165 (-)
AMCG00007704 NA other downstream 502744 27357731 ~ 27370519 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other downstream 1802415 26053764 ~ 26070848 (-)
AMCG00007684 shf,LOC108430988 other downstream 2241671 25630792 ~ 25631592 (-)
G25422 NA other downstream 2608312 25264332 ~ 25264951 (-)
AMCG00007637 NA other downstream 3591699 24262690 ~ 24281564 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other upstream 1015558 28894693 ~ 28921123 (-)
AMCG00007768 NA other upstream 1121914 29001049 ~ 29013947 (-)
AMCG00007817 NA other upstream 3312875 31192010 ~ 31246649 (-)
AMCG00007822 NA other upstream 3459581 31338716 ~ 31342792 (-)
AMCG00007835 LOC107594750 other upstream 3925764 31804899 ~ 31816151 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location