AMCG00007726 (LOC102788062,LOC101156874,LOC100699863,LOC102296031)


Basic Information

Item Value
gene id AMCG00007726
gene name LOC102788062,LOC101156874,LOC100699863,LOC102296031
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28057435 ~ 28063864 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007726
ATGATGGAAGATCATCCTTCCAAGATCTCCATGGTgccctcttctcccagtgggTCTTCAGTCAGCACGGGCATGGATGACAGCCGAGGAGTgggtcctctctctctctcagttaaAAGTCCAGCCCCTGGCAAATCCCTCAGCCCTGCCCTGCTCTGTAAAGTGTGTGGGGACACCAGCAGTGGAAAACACTACGGCATCTACGCCTGCAACGGCTGCAGTGGCTTCTTCAAACGCAGCGTCAGGAGGAAACTCATCTACAGGTGCCAGGCAGGAACGGGAATGTGCCCAGTGGACAAAGCCCATCGCAACCAATGCCAAGCGTGTCGCCTGAAGAAGTGTCTGCAGGCTGGCATGAACAAAGATGCAGTGCAGAACGAGCGCCAGCCACGCAGTACAGCTCAGGTGCGCCTGGACACCATTGACGTGGACACGGAGAAGGACCACCTGGCCACCACGCGGGAGCCCACATCCTCCTCCTGCCCTGTCATCACCCGGCCCCTCATCAGCTCCTCCATCACCTCCTCTGCCCCCTCCCAGCGCTCTGCCAGCCCCCAGAACAACCATCGCTTCATGGCTAGCCTCATGACTGCAGAGACCTGTGCCAAGCTGGAGCCAGAGGACGTGGACGAGAACATTGATGTGACGAGCAACGAACCAGAAAGGGCCTCCTCAGAGTACCAGATGTCTTTGTACCCACCCAGCAGCCCGGAGAACGTGTACGAGACCTCGGCCCGCTTGCTCTTCATGGCTGTCAAGTGGGCCAAGAATCTGCCTGTGTTCTCCAATCTGCCCTTCAGGGACCAGGTGATTCTGCTGGAGGAGGCGTGGAGCGAGCTGTTCCTTCTGTGTGCCATCCAGTGGTCTCTGCCCCTGGACAGCTGCCCCTTGCTCTCAGTGTCCGAGCTCTCGCCCACCCTACAGGGCAAGACCAGCTTTTCGGGGGCCAATCTGCGTGTGCTCCAGGAGATCTTCAGTCGCTTCAAGGCTCTCACTGTGGACCCTACAGAGTTTGCCTGCCTCAAGGCCATTGTCCTCTTCAAACCAGAAACCAGAGGATTGAAGGACCCAGAGCAGGTAGAGAGCCTTCAGGATCAGTCACAGGTGATGCTGGGTCAGCACATTCGCACACATTACCCCAGCCAGCCTGTCAGATTTGGAaaactgctgctgctcctcccCTCTCTGCGCTTTGTGGCCTCCGAAAGGATAGAGCTGCTGTTTTTCCACAGGACCATTGGCAACACGCCCATGGAGAAGCTGTTGTGTGACATGTTCAAAAACTAG

Function

NR:

description
PREDICTED: photoreceptor-specific nuclear receptor-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08546 NR2E3, PNR; nuclear receptor subfamily 2 group E member 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007726 True 1287 mRNA 0.57 8 28057435 28063864

Neighbor

gene id symbol gene type direction distance location
AMCG00007724 NA coding downstream 173038 27879260 ~ 27884397 (-)
AMCG00007722 LOC106562765 coding downstream 178300 27873263 ~ 27879135 (-)
AMCG00007719 NA coding downstream 384690 27667521 ~ 27672745 (-)
AMCG00007712 NA coding downstream 487894 27566167 ~ 27569541 (-)
AMCG00007713 NA coding downstream 524714 27518538 ~ 27532721 (-)
AMCG00007730 NA coding upstream 20822 28084686 ~ 28099269 (-)
AMCG00007728 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 coding upstream 40604 28104468 ~ 28128157 (-)
AMCG00007729 NA coding upstream 69674 28133538 ~ 28182525 (-)
AMCG00007731 NA coding upstream 119687 28183551 ~ 28194125 (-)
AMCG00007732 LOC107569349,LOC107754357 coding upstream 178453 28242317 ~ 28266497 (-)
G25768 NA non-coding downstream 390363 27662224 ~ 27667072 (-)
G25750 NA non-coding downstream 492726 27564039 ~ 27564709 (-)
G25749 NA non-coding downstream 493745 27563240 ~ 27563690 (-)
G25748 NA non-coding downstream 494417 27562728 ~ 27563018 (-)
G25746 NA non-coding downstream 503325 27553497 ~ 27554110 (-)
G25968 NA non-coding upstream 612976 28676840 ~ 28702537 (-)
G25972 NA non-coding upstream 632601 28696465 ~ 28699849 (-)
G25985 NA non-coding upstream 668900 28732764 ~ 28732994 (-)
G25987 NA non-coding upstream 670248 28734112 ~ 28734449 (-)
G26092 NA non-coding upstream 967546 29031410 ~ 29049165 (-)
AMCG00007704 NA other downstream 686916 27357731 ~ 27370519 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other downstream 1986587 26053764 ~ 26070848 (-)
AMCG00007684 shf,LOC108430988 other downstream 2425843 25630792 ~ 25631592 (-)
G25422 NA other downstream 2792484 25264332 ~ 25264951 (-)
AMCG00007637 NA other downstream 3775871 24262690 ~ 24281564 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other upstream 830829 28894693 ~ 28921123 (-)
AMCG00007768 NA other upstream 937185 29001049 ~ 29013947 (-)
AMCG00007817 NA other upstream 3128146 31192010 ~ 31246649 (-)
AMCG00007822 NA other upstream 3274852 31338716 ~ 31342792 (-)
AMCG00007835 LOC107594750 other upstream 3741035 31804899 ~ 31816151 (-)

Expression


Co-expression Network