AMCG00007734


Basic Information

Item Value
gene id AMCG00007734
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28431981 ~ 28438035 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007734
AAATAAGGAAGAGGTTCCGACTGGGAGGATAATGAGGAAACGATAGTACATTTCATCGCATTTCTGGACTTAAGGCATTATCCGACTGAAACGATCACATATTGACGATTGAGCCGAGTGTCTTTGCCGTCTATATCGTGACCTAGTACGAGAAAGCGTACGGTCGTGTATTGTATGTTCGCTTCCTTGTGATTTTCTGCAACACAGTGCTGTGTGCAACCAAAACGAGTTGATCAACACAATAGCCTGCCCTGAGACAAAGAGATTTAGAAACTGAGAAGAGATAAATGCTGTTAATACCCTTACACCCAGCCATGAAATTAGTTAGGCGTATTTTTGTAACAGCGCATCACTTAATATAATTTCGTGACAGTAGACATTTACAATTCGTAGAAACTGATtacaacacatatacatacataaatcactATTGTTAAATATCACAGATACACGCACAGTTGATTTCGGTGTGCAAATAGTTGTTTCCTAAATGCTGGTCGAGTCGCTGTGAAAATAATAGTTGACGCCTCCAGCACCATGTTCGGGAAATCAGCGGGCTACCAGTACCAGGCTCTCCCGCAGAGAGACTCTCTGTTTCAGCCGAGCCCCGGCCTGTACGTGTCTACCGAGAGGTTCGTCCAGTATAATAACACTGCAGGACATTCATTCGACTATGTCCCCAAAATCGCGGAAAACGATTTCACAGACAAGGCTCAAGGCTGGCTTTCTTGGATGTGCAACCTGATTGTCACTTTCCTTGTGTTTCTCTTCACCATCATAACCTTCCCGGTGTCGGCTTGGTTTGTTCTCAAGGTTGTGCCCAATTACGAGAGGATCGTTGTTTTCCGACTGGGACGCATCCGCCCCCCTAAAGGGCCAGGAGTGGTGCTGGTGCTTCCCTTCATCGATCAGTGGAAGAGGGTTGACCTGCGCACAAAAGCTTTCAACATCCCGCCCTGCAAGGTGACAACCAAAGATGGGGGGCTGGTGTCAGTGGGAGCTGATATCCAGTTCCGCATCTGGAATCCAGTGATGTCAGTGGTGGCCGTGCAGGACCTGAACGCCTCCACTCGCCTCACTGCGCAGAACGCCATGACCCGCAGCCTGATCAAAAAGACTGTGCGAGAGATCCAAATGGAGAGGATCAGACTGGGGGAGAATCTAGGGGTCGACATCAACGAGAAGACGCGGCCCTGGGGGCTGGAGGTGGATCGAGTGGAACTGACTCTGGAGTCTGTGCTGAAGGCCCCCGAGGACTGTGCCTCTGTGATCATGCCTCCCTCTGTGCCCGGGCTGGAGGGGCTGACTGGACCCATTCAACAGCTGGCTATGCATTTCCTCGGCAACAACAGCATGTCTACGCCCAGCCACGGCAAAGGAGACACAGTCAGCTTTGTGGATGAGCGTGGCCCTACCGACCCTGCAGTGCTGAAGCGCCTGAGTGCCGAGGAGCTGCTGTCCACAGTGGAGGGGCTTCTGTCTGAGAGGCTGGTGAGCCAGGTGGGCGCCTGTTTCCAGTTCAACATCGGCCTCCGCGATGGGGCTCAGAACAACTACTTTGTGGATCTAAGCGAAGGTTCTGGCAAGGCTGGTGCTGGAGTCCCCGATCGCACTCCTGATGTTGTTTTGCAGATGAGTGAAGAGGACCTCGTGGCGATGCTCCAGGGCAACCTACGGCCTTTTGCAGCGTACACTGGTGGCAGACTGAAGGTTCAAGGGGACTTAAAAACTGCCATGAAGCTGGAAGAACTGATCAAAGTGATGAAGCAACAGTGATTCCTGCAGCAGGCCTTGTTAAGCTTCCAGAATGAAAAGGGAGAAGCCCCAGAAATTCCTTTCTATCAACTTCCAAATGAAGTAGGTGCAGCTATGTGAAGTGTAGAGCACTGCTGAGAAAGCTGCATCactgctttgaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtatagatcacacacatatatagatataattaATCTGGTTTACGACAAGTCATATACAACAAGGAAGTgttaatgtttatgtattatgtacatattcattggcttcaaaaaataataattattaccaAACGTAAGAGTTATATAGTAACAAATATATAGTAATTGGAGTGCAATACACTTGATTAGTAAGCACATATGATAACAGTTAGGAGGCAGAAAGCTGAAAGATCTGTGGttctataaatgtaatttggaaAAGTGAGTCTTCACAAGGCTAGATTTGGTATCTACatatcagaaacaaataaataattattcagaTCGTAATACTTACTATGATGAGTAACAAGATAGTGGACAGTAGGAAATGGTTTGTGCCTGATGAGCTGGTACAGAATGTCCCTCCTACTGCTCCATACAGCCTTATAACAGTGGGCACCTGATGTGTGCAGGATATCTATTTCCATGTCAAAACAATAATGGAAGGCCTTTCCATGCTGTGctaaacattttgtacattttgtatcatGCACTAGTGAAAATctcttcacattttaaaagctttaatgttttgttgtgATATTAAGTATTTATGAATAGGCTATATTTCAAACTCAAAAAGGCCTACCACTGTTTTTCATAGTTGTGCTTTTTGGGGAACCTTGCTTCTTGTGTTAGGTACATTTTTTTAGAATATGTTGGGCAATATTAACAGATTTTAAGCTAGAAGTGTAAGTTGTTTCATAATACATAGTGGGTGTTTGCTGAAAAGGAACAAATGTTTTAGCCATTCAGACTGCAAAAGGTTTAGAacccagaataaaataaatgcagtacgATTAAGtaggttaaacaaaaaagtcGAATGATTGTCTTAAGTGTTTTACGATTTACAAGTTTTTCCTCggatattttctaaaatatgcacaaaacactatttaaaacaaatcacaatgtgtaaatatatttataagttATAATTATTAGAGCACTGTTGAAAGTGCaaggctgctgtgtgtttgaatggactgctattcatttttaaagaaatgtagtgtagtgtaatttGAATATTGATGTTTCAATACTGGTTTTGCCATGTctctcttttaaaatgatttcaatatattttatagttttttttcttggtcaATTTGCTTGAAGTAGATTGctgaatattttaatgatttaaatttaaGCTGTGAAATTGCATATGCTACAAGAGTGGTTCCTACTGTACCCATAATGTCAGAACATTGGTAAGAAAATGCTGCATGGCTCCCATTCCATCAAACATTGGAACAGATTTAAAAAGCATTCCTCCCCCGATCTTCAAAGGATAACCAGTAAACACTGTCACTTCAGTTTAGCTGTGCTGTTGGTTTCCATATGGGATTAGTAGAATTACAATTTACGGCGCATGGTATTCCCACATTTACTTCACTGCTGAGAAAAGGCATTGTACCCCTGACAGGGGGCTGTGGAGAGAGATGCATTAGAAGTTGGAGGTTATTTTCCTATAACGTAATTCCTTGTCCCTGACATGGCCTTCTCTGACCATGCAGCTGTTTAGAAAGAAAACATGCGTTATCTTCAAGGTTCTTTTTTCACCTCCTGCTAAACACTGTCTAAACCATTTTTTACAGTTGTGCCACCTTTGTGTTTATTACATAGGCTCTTATATGAGAGAGGTCTTGACCTGGACCTTCATAAAatttaacttgttttgtttatgaatgGGGAAACCTTGGGTGTATTGGCTTTCAAGGTGAGTATTGTGGAACTGCAACTCTTGATTGTTGGCCTAGTGCAGCGGTCCCcaaacttttgttgtttttctaccaGGCTGCTTCAAGACCAGCAGATTACCATCGCAGGTTGGGGACCACAGGCCTAGTGGAATGCTTTGCACATAAAGTGAATAAGTTGTTGCACAAGTTATTCAGTATACTGAAACAAATTGTACCTGGATACGGTATACAGATCTCCCTTGGAAGTAGTACAATATTTTggcaataaaaaaattaaatatatttcatactACCTCTCTTTGAGAACACCTGTTGCTCAATTTAGATTTAGTTGTGTGTTCTATTACAGTTACTACTCCTGCAACTACAACTGCTGCAGGGTTGATCAAATGTACTTCCAAAAtaattttttcctttattttttaatccctgACCACTCTGCTCAAGACACccctgttcagactgtacctttAATAGCCAGCCCCCTAATCAACAATGTGCCAGTATCACATTAATGTACTTCCATTATGCACTAATATGCTCCCCTCTATTGCTCCCTATTATTTAGCTACTTCTTCCTGCACATCTATTGCGTTACTGTAACTGTTGCTGTACAATTGGTAACTTTGCCTGCTTTGACACAACTGCACATAAATATTGTTGTAACTATTGCACTGTTAAGTACTGATTTTACTTAacttatactgtatattgtacttATTAGCAatcactgtaaaatgtaatgttttgtgaaaagtatttattttgtctactGTATGTGTCACCTACATACATAcctaaataaatgcaacattgcTAAACTAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0032934 sterol binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007734 True 4519 mRNA 0.42 7 28431981 28438035

Neighbor

gene id symbol gene type direction distance location
AMCG00007736 mpi,LOC106560745 coding upstream 10685 28414965 ~ 28421296 (+)
AMCG00007733 LOC107745566 coding upstream 53729 28367268 ~ 28378252 (+)
AMCG00007725 NA coding upstream 376124 27965346 ~ 28055857 (+)
AMCG00007727 myo9a coding upstream 510341 27918958 ~ 27921640 (+)
AMCG00007720 gramd2,LOC103030744,LOC107748265,LOC106562775 coding upstream 576547 27841088 ~ 27855434 (+)
AMCG00007741 NA coding downstream 113785 28551820 ~ 28576250 (+)
AMCG00007746 commd4,LOC105008267 coding downstream 174579 28612614 ~ 28617398 (+)
AMCG00007747 NA coding downstream 181386 28619421 ~ 28623990 (+)
AMCG00007745 aph1a,LOC103368490 coding downstream 199861 28637896 ~ 28646093 (+)
AMCG00007753 NA coding downstream 263946 28701981 ~ 28717335 (+)
G25827 NA non-coding upstream 322391 28104602 ~ 28109590 (+)
G25819 NA non-coding upstream 353860 28070346 ~ 28078121 (+)
G25753 NA non-coding upstream 860490 27570543 ~ 27571491 (+)
G25709 ppib,LOC102792920,LOC107680152,LOC107577199,LOC107754356,LOC107673286 non-coding upstream 862628 27566695 ~ 27569353 (+)
G25699 NA non-coding upstream 1075904 27355874 ~ 27356077 (+)
G25984 NA non-coding downstream 293095 28731130 ~ 28731401 (+)
G26103 frmd5,LOC107691145,LOC107556247,LOC103373640,LOC570903 non-coding downstream 636421 29074456 ~ 29082381 (+)
G26146 NA non-coding downstream 873588 29311623 ~ 29311944 (+)
G26167 NA non-coding downstream 929338 29367373 ~ 29367723 (+)
G26171 NA non-coding downstream 936341 29374376 ~ 29375878 (+)
G25822 NA other upstream 337240 28083822 ~ 28094741 (+)
AMCG00007640 NA other upstream 3932331 24476487 ~ 24499650 (+)
AMCG00007631 NA other upstream 4237500 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 4761902 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 5238460 23189460 ~ 23193521 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 609 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 244136 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 462023 28900058 ~ 28911566 (+)
AMCG00007769 acsbg1 other downstream 565060 29003095 ~ 29006379 (+)
AMCG00007788 NA other downstream 1184276 29622311 ~ 29724734 (+)

Expression


Co-expression Network