AMCG00007735 (LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846)


Basic Information

Item Value
gene id AMCG00007735
gene name LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28438644 ~ 28454707 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007735
TGGGGGGGTATATAAACAGCCTGCATTGAGAGTTCCACAGAGGTCCCAGTTAGCAGAGCAGCACTGACACCATGATCGTGAAGGGCTGTCTACGCTGTACAGCCATGCTGTCAGGCTGTCAGGCCTTCAGGTCTACAGGGCTGCAGTGTGACCGCCCATACACAGCAGTATTCACCAGGAGCTGCCACAGGACCAGCGTGCCAATTGTGAATCAGAGCACCTCTCCCGAAATCAGCAGGGCCGTCAGAGCCTTCATGGAGATTCCGGGAAACTGGAGAAACGGAGTGGCCAACCTGTACACCTTCTGGAAACTGGATGGCTTCAAGAACATTCACCGAATTATGCTCGACAATTTCAACACCTTTGGacctatttatagGGAGAAAGTCGGTTACTATGAAAGTGTGAATATCATTAACCCAGAAGATGCTGCCATCTTGTTTAAAGCAGAAGGCCACTACCCCAGGCGACTGAAAGTGGAGGCCTGGACTTCATACAGGGACTACAGAAACCTCAAATATGGGGTTTTGTTAAAGAACGGGGAGGACTGGCGGTCTAACCGAGTGATCCTAAACAAGGAGGTGATCTCCCCCAAAATGCTGGGGAACTTTGTGCCTTTACTGGATGAAGTGGGCCAGGACTTTGTGGCTCGAGTTCATAAAAAGATTGAAAGGAGTGGCAGGGGCCAATGGACCACAGACCTTTCCCAAGAGCTCTTCAAATTTGCTCTGGAATCGGTGAGCTCTGTGCTGTACGGGGAGCGGCTGGGGCTCATGCATGACTACATCGATCCCGAGGCACAGCACTTCATCGAATGCATCACCCTGATGTTCAAGACCACCTCGCCCATGTTGTATATTCCCCCCAGCCTGCTGCGCAGAGTGGGTGCCAAAGTGTGGAGGGACCATGTGGATGCCTGGGATGGCATCTTTAGCCAGGGTAAGTGGAGACAGCAGAGCACGCTTGTAACAGTTCAGAAAAATATAGCAACCTTGTCACAACTACACCCTGTGGCAGTGAGTTTGCAAAGATACATAACGGAGGACATTGTGATACAAAATTACCACATTCCATCAGGGACACTGGTGCAGCTGGGGCTGTATGCTATGGGCCGCAGTCCCAGTGTGTTCCCCAGGCCAGAGCAGTACCGGCCCTCCCGCTGGCTCAGAGGTGAGAACAGCTACTTCAGGAGCCTCGGCTTTGGCTTCGGCCCTCGCCAGTGCCTGGGCCGCAGGATCGCGGAGACCGAGATGCAGCTCTTCCTCATACATATGCTTGAGAACTTCAGGATTGAAAAGCAAAGACAGGTGGAAGTCAGGAGCACCTTTGAACTGATTCTGTTGCCAGAGAAGCCCATCTTGTTGACCCTACGGCCACTGCAACCAAGGAAGTAA
>TU32501
atggtgttcctaataatcctttaggtgagtgtatatatatatatatattgcacacaTACTATAGGCAAGcatatgttaatatatacaatttgtatATTATGTGTTTGTCTTCACTTCCAGACTACACCCTGTGGCAGTGAGTTTGCAAAGATACATAACGGAGGACATTGTGATACAAAATTACCACATTCCATCAGGGACACTGGTGCAGCTGGGGCTGTATGCTATGGGCCGCAGTCCCAGTGTGTTCCCCAGGCCAGAGCAGTACCGGCCCTCCCGCTGGCTCAGAGGTGAGAACAGCTACTTCAGGAGCCTCGGCTTTGGCTTCGGCCCTCGCCAGTGCCTGGGCCGCAGGATCGCGGAGACCGAGATGCAGCTCTTCCTCATACATATGCTTGAGAACTTCAGGATTGAAAAGCAAAGACAGGTGGAAGTCAGGAGCACCTTTGAACTGATTCTGTTGCCAGAGAAGCCCATCTTGTTGACCCTACGGCCACTGCAACCAAGGAAGTAAAGAACAAGGACTCCTGGCCTGAGCAAACGGCTTCACACAGAGACCGGCCCTACCGCTTTGTTTGCCACTAAAGGGACAGCTGGGTCTGCTTCAGAGTTCAGAAGCCTTTGTGTCCGTGCTCATGTTATCAAAACTGGAATAAGTTAAGGCAGAATACTAATCATAGGAAAATTCACTGCAGGTTCATAACCTATAAAACCTTACCAAAATAGAAGCTGCAGTGGGTTAAATTCTCAGAGGAACATGacaattgttttcttcttccttaACGTATCAAAccacagggagacagagaagaCAAACCAAATGTTGAAAGCATATGAATGTAATGTCTCTCTGCAGACTGTTCCTCTAGAACACTTGCAAAGTCTGCAGAATGGGTGAATTGATTCCAAACCATCAAGCAgcaaaacactgcattaaacTATTCAGGATGATAGACTGATATCCTATACTCTCTCATCTTATCTCacctgtacatttttatatattgttggGAGTTCATGTAAACACTAAATATAGAATTCGGACAAATATTTCTGTGCAAATGTAAgtaacaaatgtaacaaattaattagtaacaaatgtttttgtggtAATACTGTCTTGCCTtgtcatttacacatttttggaataatctttaaaaattattttattaaatatatacataagaa

Function

NR:

description
PREDICTED: cholesterol side-chain cleavage enzyme, mitochondrial

GO:

id name namespace
GO:0008203 cholesterol metabolic process biological_process
GO:0008207 C21-steroid hormone metabolic process biological_process
GO:0006694 steroid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0031966 mitochondrial membrane cellular_component
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function
GO:0008386 cholesterol monooxygenase (side-chain-cleaving) activity molecular_function

KEGG:

id description
K00498 CYP11A; cholesterol monooxygenase (side-chain-cleaving)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007735 True 1394 mRNA 0.52 7 28438644 28454033
TU32501 False 1188 TUCP 0.41 3 28453009 28454707

Neighbor

gene id symbol gene type direction distance location
AMCG00007734 NA coding upstream 609 28431981 ~ 28438035 (+)
AMCG00007736 mpi,LOC106560745 coding upstream 17348 28414965 ~ 28421296 (+)
AMCG00007733 LOC107745566 coding upstream 60392 28367268 ~ 28378252 (+)
AMCG00007725 NA coding upstream 382787 27965346 ~ 28055857 (+)
AMCG00007727 myo9a coding upstream 517004 27918958 ~ 27921640 (+)
AMCG00007741 NA coding downstream 97113 28551820 ~ 28576250 (+)
AMCG00007746 commd4,LOC105008267 coding downstream 157907 28612614 ~ 28617398 (+)
AMCG00007747 NA coding downstream 164714 28619421 ~ 28623990 (+)
AMCG00007745 aph1a,LOC103368490 coding downstream 183189 28637896 ~ 28646093 (+)
AMCG00007753 NA coding downstream 247274 28701981 ~ 28717335 (+)
G25827 NA non-coding upstream 329054 28104602 ~ 28109590 (+)
G25819 NA non-coding upstream 360523 28070346 ~ 28078121 (+)
G25753 NA non-coding upstream 867153 27570543 ~ 27571491 (+)
G25709 ppib,LOC102792920,LOC107680152,LOC107577199,LOC107754356,LOC107673286 non-coding upstream 869291 27566695 ~ 27569353 (+)
G25699 NA non-coding upstream 1082567 27355874 ~ 27356077 (+)
G25984 NA non-coding downstream 276423 28731130 ~ 28731401 (+)
G26103 frmd5,LOC107691145,LOC107556247,LOC103373640,LOC570903 non-coding downstream 619749 29074456 ~ 29082381 (+)
G26146 NA non-coding downstream 856916 29311623 ~ 29311944 (+)
G26167 NA non-coding downstream 912666 29367373 ~ 29367723 (+)
G26171 NA non-coding downstream 919669 29374376 ~ 29375878 (+)
G25822 NA other upstream 343903 28083822 ~ 28094741 (+)
AMCG00007640 NA other upstream 3938994 24476487 ~ 24499650 (+)
AMCG00007631 NA other upstream 4244163 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 4768565 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 5245123 23189460 ~ 23193521 (+)
AMCG00007754 NA other downstream 227464 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 445351 28900058 ~ 28911566 (+)
AMCG00007769 acsbg1 other downstream 548388 29003095 ~ 29006379 (+)
AMCG00007788 NA other downstream 1167604 29622311 ~ 29724734 (+)
G26258 tpm1,tpma,LOC108237348 other downstream 1300333 29755040 ~ 29819552 (+)

Expression


Co-expression Network