AMCG00007736 (mpi,LOC106560745)


Basic Information

Item Value
gene id AMCG00007736
gene name mpi,LOC106560745
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28414965 ~ 28421296 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007736
GTTTTCTCTTTGGTTCCGACCCGGCTAAATTACATGGATGCAGCATGAGGATGTGGTCGGTGTACGGTGACGTCAGCGGGTTGTCATTGCCAGGACCGACGTTGCAGCAATGGAGGAAGTAAGAGACAGTGAAGTTGCCAAGCTCGTTGTAAGCGGAGACCCTCTGACTGTGATTGAAGATGACAAGCCCTATGCAGAGCTGTGGATGGGTGCCCACCCTAAAGGAGATGCTCTCATCAAAGATAATAGGATTTCCCAGAGGACTCTGGGGCAGTGGATAGCAGATTATCCAGGCTGCTTGGGATCAAAGGTCAAGGATACATTCCAGGGACAGCTGCCCTTTCTGTTCAAAGTTCTCTCTGTTAACCTTGCACTGTCCGTCCAGGCCCATCCCAACAGGGAATTAGCAGTGAGGCTTCACGCTCAGTTTCCAGAGCACTATCCAGATAGCAATCATAAGCCAGAAATGGCCATCGCTCTAACTCCATTCGAGGGTCTCTGTGGCTTCCGACCCGTGGAAGAGATTGTAGGCTTTCTGAAATCGGTGCCCGAGTTCCATGCTTTGGTGGGAAACGAGGCTGCGGAGGAGCTGCAGAGCAGTGTGGGGGATGCAGGCAGGGTGTCAGAGGCTCTGAAGAAATGCTTCACCAGGATGATGAACTgtgagaaaaaagtatttgttgaCCAGCTCAACATGCTAGTGAAAAGAGTATCTGAGGAAGCGGCTGCAGGAAAAGACACATCAGGAAGTAATGGGGACCTGTTGCTACGGTTACACTCACAGTTTCCAGGGGATATTGGCTGCTTCTCCATCTACTTCCTCAACCGGATAATGCTGGAGCCAGGGGAAGCCATGTTCCTGGGGGCCAATGAGCCTCACGCCTATTTGTATGGAGATTGCATTGAGTGTATGGCCTGCTCTGACAACACTGTGCGAGCTGGGCTGACACCCAAGTACATTGACGTGAGCACCCTTTGCGAGATGCTGAATTACTCTCCTGCCCCAGCCAGCTCCAAAATCTTCCCTTCTGTCCGAGACGCCTCTGATCCATGTGTCTTCCTCTATGACCCCCCTGTCCCCGACTTCACCGTCATGAGGATCCAGATCCCCGGATCAGTGAAGCAGTACACTGTGGCTCCCATCGACTGCGCTGGGATCCTGCTGGTGGTGACTGGAGAGGCCACCGCTGCCTCGGCCGCCGCCCTCTCTGACATGGCTCTCAGGAGGGGTTCTGTGCTCTTCATCTCAGCCAATGAGAGTGTGGCACTGCACATAACCTCCCCTGCCGGCATGCTGCTGTTCCGGGCCTGCTGCGTCTTGTAACCCCTTCCAACCCCCTGCCTCAACCCTAAGGGACCTCTAGTACCCCCAAACTGGGCTGCTCTGGCTCTAGTTAGGTAGCATTAGTCTAGCTGAGGAGCCTGGCTGAATTTTATCCTAGAAACTGTGACACTGTCATCATACAGTCATACAGTAGAACTCAGTTCATATcatatgtacaatatgtatgtatgtttactACTTTAAGTACATGAGAAGAATATGCTGCACTAAATTGTCGGAAgaagggacttttttttttaataatgcaagcAGCCTGggtttgattatttttggaATGGAAGTTTATTTATAGGTCTCCTTGGTATGCTTGCTACACTCTATCCCTGTTATAGGAGTAACACCTCTCTGTTATTTCCTTTCTTGTTCATAAAAATAGTCCAGATTGCTGTGCTTATCAAACTGACTTTAATATTGAGGTGCAAACTTAAAACTCATGAGATTACAACAAAGAAAAGAtaatattttccttgttttatttccttactCAGTGCCTGACCTCTGCAAAGAGTAGGTCCTCCAGCCCCCCCTACAGTCTAAACAGGGTAGCTGTATGCATGGACACCTGATTGCATTagcttaataaattacaattgcTCCTTACCtctcaacaaattacattaatgaacAAAGTGGTTGCTTCTCAGTTGGTTGATCAGGCAGGCCTGTATAActgaataaaattatatatatatatatatatata

Function

symbol description
mpi Enables mannose-6-phosphate isomerase activity. Acts upstream of or within chondrocyte morphogenesis; chordate embryonic development; and liver development. Predicted to be active in cytosol. Is expressed in several structures, including female organism; margin; nervous system; neural tube; and polster. Used to study congenital disorder of glycosylation type I. Human ortholog(s) of this gene implicated in carbohydrate metabolic disorder and congenital disorder of glycosylation Ib. Orthologous to human MPI (mannose phosphate isomerase).

NR:

description
PREDICTED: mannose-6-phosphate isomerase

GO: NA

KEGG:

id description
K01809 manA, MPI; mannose-6-phosphate isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007736 True 2048 mRNA 0.48 9 28414965 28421296

Neighbor

gene id symbol gene type direction distance location
AMCG00007733 LOC107745566 coding upstream 36713 28367268 ~ 28378252 (+)
AMCG00007725 NA coding upstream 359108 27965346 ~ 28055857 (+)
AMCG00007727 myo9a coding upstream 493325 27918958 ~ 27921640 (+)
AMCG00007720 gramd2,LOC103030744,LOC107748265,LOC106562775 coding upstream 559531 27841088 ~ 27855434 (+)
AMCG00007721 znf609,LOC107745096,LOC107695009,LOC107680896 coding upstream 601734 27795968 ~ 27813231 (+)
AMCG00007734 NA coding downstream 10685 28431981 ~ 28438035 (+)
AMCG00007741 NA coding downstream 130524 28551820 ~ 28576250 (+)
AMCG00007746 commd4,LOC105008267 coding downstream 191318 28612614 ~ 28617398 (+)
AMCG00007747 NA coding downstream 198125 28619421 ~ 28623990 (+)
AMCG00007745 aph1a,LOC103368490 coding downstream 216600 28637896 ~ 28646093 (+)
G25827 NA non-coding upstream 305375 28104602 ~ 28109590 (+)
G25819 NA non-coding upstream 336844 28070346 ~ 28078121 (+)
G25753 NA non-coding upstream 843474 27570543 ~ 27571491 (+)
G25709 ppib,LOC102792920,LOC107680152,LOC107577199,LOC107754356,LOC107673286 non-coding upstream 845612 27566695 ~ 27569353 (+)
G25699 NA non-coding upstream 1058888 27355874 ~ 27356077 (+)
G25984 NA non-coding downstream 309834 28731130 ~ 28731401 (+)
G26103 frmd5,LOC107691145,LOC107556247,LOC103373640,LOC570903 non-coding downstream 653160 29074456 ~ 29082381 (+)
G26146 NA non-coding downstream 890327 29311623 ~ 29311944 (+)
G26167 NA non-coding downstream 946077 29367373 ~ 29367723 (+)
G26171 NA non-coding downstream 953080 29374376 ~ 29375878 (+)
G25822 NA other upstream 320224 28083822 ~ 28094741 (+)
AMCG00007640 NA other upstream 3915315 24476487 ~ 24499650 (+)
AMCG00007631 NA other upstream 4220484 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 4744886 23657850 ~ 23670079 (+)
G24824 mesdc1,LOC107553753,LOC107691577,LOC107709503,LOC107662264 other upstream 5221444 23189460 ~ 23193521 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other downstream 17348 28438644 ~ 28454707 (+)
AMCG00007754 NA other downstream 260875 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 478762 28900058 ~ 28911566 (+)
AMCG00007769 acsbg1 other downstream 581799 29003095 ~ 29006379 (+)
AMCG00007788 NA other downstream 1201015 29622311 ~ 29724734 (+)

Expression


Co-expression Network