AMCG00007737


Basic Information

Item Value
gene id AMCG00007737
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28400680 ~ 28414910 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007737
GCGCACAAAGCTGCTGTTCAGGAAGTTGTCTGAGTGAAAGATACGGCAAAGCAAAGGAAAGTACGAAAGAGACGGGGTTATTTATCACATAGGTAGCGAGGACGAGTAGCTCAAAATGTCGGGATTCGACAGCAACCCCTTCGTGGACCCAGTGGATGTCAATCCTTTCCAGACCACCCCAACTCTCACTACTATCCCTGCTCAACCAGCCCCATCCCAGCCCGCAGTGTTGCAGCCCTCAGTGGAGCCCAGTCCACAGGTCACAGCCGCCGCGGCCCAGGCCAACCTCCTTAGGcagcaggaggagctggagcggAAGGCAGCAGAGCTCGACCGCAAGGAGCAGGAAATGCAGAACAAGAACTTGGCTGCTGGTGTCAAAGAGAACAACTGGCCTCCCCTGCCAAAGATCTGTCCAATAAAACCATGCTTCTACCAGGACATTACAGGGGAAATTCCAATAGAGTTCCAGAGGGTTTGCAAGATGATATACTACCTTTGGATGTtTCACTGTGTGACTCTGTTCCTGAACTTGTTGGCATGCCTTGCATTGTTCACCACAAACTCTGCTAAAGGAGTGGACTTCGGCCTGTCAATCCTCTGGCTAATACTCTTCTCCCCCTGTGCTTTTCTGTGTTGGTACAGGCCTGTGTATAAAGCCTTCAGgtCTGACAGCTCCTTcaatttctttttcttcttcttcgtcttctttTTTCAATTGGTGGTGTACATCATCCAGGCAGTAGGCATCCCTAATTGGGGTAACAGTGGTTGGATTACTGCCATTAGTACGATCGGGACAAACGTGGCAGTGTCTGTTGTCATGATGGTAGTGGCAGGGTTCTTCACGGTCTGTGCAGTGATGGCGGTTATCTTACTGAAAATGgtGCACTCCATGTACAGGCGAACGGGCGCCAGTTTCCAGAAGGCCCAGCAGGAATTCTCCCAGGGCGTCCTCACCAACAGGACCTTCCAGAGTGCCGCCACCACTGCGGCCTCCACTGCCGCCCAGAGCGCCTTCCAGAGAAACTAGCCAGGCTGGGCTGGCCCTCCCCAAGTCCCCCACCAGTCATAACGCCTTCCTTATCCAAGAGATGCACTTTCATGGAATTCCTCCTGATACATTGTGGGCctacctgcctgcctgcctacCTACCTGCCTATTGTCttggcttttcatttttttttttttttttttaagtattgtttaAGACACTACAGAACAGTGGAGTTGCCTCTATTCTCAAAGGCAGTTCTGGTGACTGGGTGGAGCAATTGCAGTGCCCTCTAGTACATATTGGTGTAATTAACCGGATTCCTTTCTacaaaattgttgttttttgtttttcttttcaggtttTGTGTCAATTGTAGAATCTAAatggtctattttttttttattgactttTTCTAATAGTAAGCTCTTCTCATCAATATTAGTCCGAATGGGTTAATctaagatttgtttgttttttgctggtGGTGCACGTTATTTACTAAGAATGCAAATGAATAGCAGCACCaaattactgttattttacatATGAAGCTATACAGTCATCTCAATagaaataataggaaaataacATGGACAAATGCactatagattttattttcctagtTAGCTAGATGccctttaatataaaaaaagtcCAGTAATTAATGTTCCCCAAGTAACTTAGATTCAACTGGACTGAGGaaggaaacaacaaaaactgtgtGCTCACCAAACCAGATacctgctgagagagagagagagagagagagagagagagagagagagagagagagagagagagagggaatcaCAAATGTGGTGCCcatgaattaataaacaatagCTTATTGCAGATATTCTGAGAGGTACAGGCAGTTGGTTCAACTtgtgtaataaatgtataaatatatataatgataaaaaaataagaactttctagtctttttttttttcttattattttcttatacaaCCTCCTCCCAGAATTCCAAACATTTTGGAAAGctgtggaaaattaaaaacagaatttccaggtttagaaatgtaatacatgtgTTAATTAACAGGAGGCGAGGGGATAGGGGAGGGGTATGTGGTAGGCTTCTTTGTACTGATAAAGAGTCTGTGAAAGTGAAGATATTTATAAGGTGGGAGCAATATTGGGTTGTGAGGGGTGAGTACAGGACTGTTGAGTCAAGGAAACTGCAAAAACGCATGGAAAGGTCATGGGAAATTATCCAAACACTGGTAGACCGATCTTCCTATCAGACATACAGCAGTACTATACAACTATTTTTCTTCGTGAGCATTGATAAGGAGTTGTTCGACATCGGAATGATTCACATTGAGTTTCTTTGGGTGTAATCGAGGATTTAACTTAATTCTGGCATGAATTTCTTTTGTATCCACAGTTTTAAAGCTTGTCCCTTTTTTGCAATGAAGgagcttgtttttaattagatagTTTTTATTATAGACATGCCTATTGGTGAAATTTGGTGATATTGTAGCAAGGATGGCACAATCTTCTATTTaggaaagcaagaaaaaaaatgatctgAGATTGTAGATTTGTAGATTGTAGATTTTTCATGAGTATAAAGTGAATGTATTAATGTTGCAGTGCAATCCTACCTAGTGAACCTGTGATCTTGCTTGCAGGCTCAGCAAGACAGACCCATTTAGTCGGCAACCTAAATCTGCCTTCTTCACTTTCTATTAAAATTGAGACATATGAAATGTTTTCCTCGATGGATAGAGTGCACTTGTAATCCATTCAGATGAAAACCAGGGCCTAGTGATTTAAGGAGTATTTGCTTTTAATGCTTCTGCAGTTGTACAGGTTGGTGTAAAAATTTGACAAAATGACTaacaaatatattgtgaaatggaagaaaagaagtttgtatacatttcattCAACAAAGCACAACGTTTGGTATTGAGGTGATGTGAAGACCCACAGTAAAGATTAAAGCCTAATAAACATTTATGGTTAAAGGtacttttaagctttttttttttttttctctccaggtttttattttaacatgatttacTTGCTAGCATAGATGTATCATATTGGGAGACCTATTGCAGTTTGTATTGTCAGGCTCTCCCTTAGTCCACACTTCATGTTCTttgaatgacatttaaaatatatgaattgctGAAACCAACTTATTTCTTATTGCTGTTTAAGCCTTGATAGCTTTCCACTCATGAATCAGCAGCATTTACCAGTAGTAGGTGATTAGGAAAGGTTGAGAAGGATGTGAATTTAGGATATCTacagtttaatgtaaaatagggaagtacatttaaaatccattaatacatacattctatattttttgtaatgtaaggCTGAATATATTTTCAGGCAGGGcgatacattttgtattacttatgCTTCCTCTAACTTATGATCGTAAGTTTTTGCGGAGTCAAGGTTAGCCTGAGAAATGTAAACTGTTTTGACATCTCCCATCATTATGACAACATGTTGGCAAGTTTTTATTTCCAATGTTTTTTCCTCTAGTTAGGGTCTTGGTATTTTGACAAAGATAAGTGCGCAAACATGCTCTGGtttagctttatttttgttagtcACTATTCctttgtatattgttattatgactgttattgctgttatttggGGTTAGACGAGGAGTTGATCATTTTGACATGCTCCGCAAAATCTGACACCTGGTTgaagatattttctttttcctctttggTTTTATGTTGCTTTTCCTCTTGCTCAAATGTGTTTTCACAGTTTTGAccaaaagtattttgttaaggGGTTTGAAGGTTTTCAGATTGAGTCCAAAGTTGGTGATGAGCATTGTTCACAATTCATTCAGTGTAGCTGCTCAGACAGAGATTTCCCATTTACTTAGAGCCCACAGGTTAGATCTGtagggaagaaaatgaaatgtacaataattcTCATGATAATATAGAAGAGAGAACATTAAAATCGAAGGCCTTTCCATTACACAGCAAAACCAATTTGTTGAATGTTTTGACTCACTGCTTATCTTTTGTTAGAATATTTCCAGTCTCttatggggacaaaatgggATTTTGGAAGCTCTAGTCAGCACACCACTACTCTGGGCAGATATGGCAAGGAATACCCATAGTTTTCAGCATGCATCCTCTTTCCCTCATCTACTTAGAGATGATACAGTCTCCTTGTAAGTTTTATAAAagttatgctttatttatttattctcttgcAAGGTTTATATTGTAGATGTTCATAACAAtcctaaattattaaatgagtaTCTCGGCACGTGTATTTTCTTCCATACCTTCTTTGTGATGATGACAGTGACTGAGCTCTATTCACGGTTTTCATATCAGTTTTAGGATCTTGTCAATAAGATCTAGAAGGGATAATCTAGTGTTTGATCATTGAAGATGTTTAGGCTTCATCCAtctcttaaaaatgtatgattagtTGTAAATTAAGAttgatatttacttttataCCCGCAGAAccgaaacaattaaaaagggtACAATACTTCAAAATGGAGAAATGATAGTGACTCAACACCGGCTGTGACGTTCAAACttttttgaacttttttttttttatatatatatatatgaacatacCATACTTTTGATTCTTGTAGTAAAGGTAATGAAaagctaaagaaaacaaatgtagtaACCGATGACTTAAAGTAAAGCTCCAGGGTCAATTGCATTGTTCTCATCAAaggttataattttttttttcattaaacaaaatcacagcATCGATGGTTCAGCCCTCATCTCTTTTTGAGCACCctaaacagataaacacacacacacacacaacttttgCACAAAAGCGTAAAGCACTGCAAACAAACCCCTAAAGCTTTATGTGATTTGtgggattattttttttaggacAGCCTATTTAATAACTATTTCATGTCCATCAAATCATCCCACATCTCTCTGCATGGGTGTTATACTACTGAAAAACATCCATGGTTTATTCTCCATGTCATGAAATTTGACAGTTGCATGTTATTGAGTCCTTGCTCATAAGCCtccattttactttaattaaagccccttttattgtatgtttggacaataaatgaatgaatcaaaTTACCTTGTCCATGGTCCACTGCTGTGACAATAAGAACATTGCAATCACCCTGTTGCAGTTAGGTGTTAGTCTGTGCATGTAGTCTTTTAATTGTAGGACAATTTTGTGCAGAAAGATCTGTGTATTTTTACAGATGTTTAACAATCAACAATTAGTGGGGGTGAGGATGATAGCTCTGATAGTTGTAAATGggttattaaaaaatgtgttttaatactagtgtattttttttggtCTCATTTATGTGTACAACTGTAAATTTAATGGCTCAGAAATAacaatttttttctcaaataaaaGACAATGCTTTGTTGTAAAGA

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K19995 SCAMP; secretory carrier-associated membrane protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007737 True 5449 mRNA 0.38 8 28400680 28414910

Neighbor

gene id symbol gene type direction distance location
AMCG00007738 bbs4,LOC107754319 coding downstream 787 28382047 ~ 28399893 (-)
AMCG00007732 LOC107569349,LOC107754357 coding downstream 134183 28242317 ~ 28266497 (-)
AMCG00007731 NA coding downstream 206555 28183551 ~ 28194125 (-)
AMCG00007729 NA coding downstream 218155 28133538 ~ 28182525 (-)
AMCG00007728 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 coding downstream 272523 28104468 ~ 28128157 (-)
AMCG00007739 NA coding upstream 11250 28426160 ~ 28429773 (-)
AMCG00007740 cyp11a2 coding upstream 23945 28438855 ~ 28453586 (-)
AMCG00007743 NA coding upstream 39904 28454814 ~ 28503390 (-)
AMCG00007742 NA coding upstream 131842 28546752 ~ 28549546 (-)
AMCG00007744 LOC107662462 coding upstream 164229 28579139 ~ 28581190 (-)
G25768 NA non-coding downstream 733608 27662224 ~ 27667072 (-)
G25750 NA non-coding downstream 835971 27564039 ~ 27564709 (-)
G25749 NA non-coding downstream 836990 27563240 ~ 27563690 (-)
G25748 NA non-coding downstream 837662 27562728 ~ 27563018 (-)
G25746 NA non-coding downstream 846570 27553497 ~ 27554110 (-)
G25968 NA non-coding upstream 261930 28676840 ~ 28702537 (-)
G25972 NA non-coding upstream 281555 28696465 ~ 28699849 (-)
G25985 NA non-coding upstream 317854 28732764 ~ 28732994 (-)
G25987 NA non-coding upstream 319202 28734112 ~ 28734449 (-)
G26092 NA non-coding upstream 616500 29031410 ~ 29049165 (-)
AMCG00007704 NA other downstream 1030161 27357731 ~ 27370519 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other downstream 2329832 26053764 ~ 26070848 (-)
AMCG00007684 shf,LOC108430988 other downstream 2769088 25630792 ~ 25631592 (-)
G25422 NA other downstream 3135729 25264332 ~ 25264951 (-)
AMCG00007637 NA other downstream 4119116 24262690 ~ 24281564 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other upstream 479783 28894693 ~ 28921123 (-)
AMCG00007768 NA other upstream 586139 29001049 ~ 29013947 (-)
AMCG00007817 NA other upstream 2777100 31192010 ~ 31246649 (-)
AMCG00007822 NA other upstream 2923806 31338716 ~ 31342792 (-)
AMCG00007835 LOC107594750 other upstream 3389989 31804899 ~ 31816151 (-)

Expression


Co-expression Network