AMCG00007738 (bbs4,LOC107754319)


Basic Information

Item Value
gene id AMCG00007738
gene name bbs4,LOC107754319
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28382047 ~ 28399893 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007738
GTAACCTTGGAAACGGACAACTTCCTGGGGCtcagtgaaatgaaaatggCGGAGGAAAAACCCCAGACGGATCTTCAGCTTCCGGTGGCCACAGAAAACAAGAAGCCCCGTCCcaaaaaagCTCCAGAGCTTCCCATTCTGGAACGGAGGAACTGGCTGATCCATCTCCACTACATCCGGAAAGATTATGAAACCTGCAAGGCAATTATCAAAGAACAGCTGCAGGAGACACAAGGAATGTctttagTACTGCGTCTCGAGGGGAAGATTCAGCAGTCTCTGGAGCTGTTTCAGAGCTGTGCACTCCTCAATCCGAGAAGCTCAGACAACCTGAAACAAGTAGCGCGATCTCTttttctaCTTGGAAAACACAAGGCTGCGATTGAAGTTTACAATGAAGCTGCTAAACTCAATCAGAAGGACTGGGAGATCAGCCACAACCTTGGTGTGTGCTACATGTATCTGAAAGACTTCAAAAATgCTCATGAGCAGTTGAATTCTGCTTTGCAGCTAAATAAACATGATTTGACATTTATGATGCTGGGAAAGATCCACTTGCTGGAAGGAGACACTGAAAAGGCAATTGATGTCTATAAAAAGGCAATTGAATTTTCACCCGAGAACACTGATCTACTGACAACACTTGGATTACTATATCTGCAGcTCGGAATCTATCAAAAGGCATTTGAACATCTTGGTAATGCCCTTACCTATGACCCCAACAACTATAAGGCTATCCTGGCAGCAGGCAGTATGATGCAGACTCACGGAGATTTCGATGTGGCCATGACCAAGTACCGTGTGGCCGCCTGTGCCGTGCCCGAGAGTCCTCCTCTCTGGAACAACATAGGAATGTGCTTCTTTGGTAAAAAGAAGTATGTTGCGGCTATCAGTTGTTTGAAAAGAGCCAACTACCTGGCTCCATTTGACTGGAAAATTCTGTATAACCTGGGGTTGGTGCATCTCACCATGCAGCAGTACGCCTCGGCCTTCCACTTCCTCAGTGCTGCCATCAACCTCCAGCCGAAGATGGGCGAGCTCTACATGCTGCTGGCTGTGGCCCTGACTAATCTGGAAGACATAGAGAATGCCAAGAGATCATATGAGCAAGCCGTGTCTTTGGACCAATCCAACCCACTGGTCAATCTGAACTTTGCCATCCTGCTCTACAACCAAGGGGATAAGAAGGGGGCCTTGCAGCAGTATCAGGAGATGGAGAAGAAAGTGAACAAGCTGAAGGAAAGCAGCAGTGTTACTGAGTTTGATCCTGAGCTTATAGAAATGGCTCAGAAGATGGGAGCAGCACTGCAGGTGGGAGAGAGCCTGGTGTGGACAAAGCCAGCCAAGGACTCCAAATCCAAGCAGCGTGCGGCTGCCCCCAGCAAGCCAGCCAGCTCCCAGCAGCCCCTGGGCTCTAACCAGGCATTAGGGCAGGCCATGTCCTCTGCTGCTGGGTACAGCAAGAGCATACAGCTATCAGCAGGCGGTGCAGTCACAGGCCTGCAGAAGCCCCCATCTTTGCCCCTGGAGCCAGAGCCCTCTGCTGAGACGGCGCCTGCAGAGCCCTCGACCCCCACAGAGTCTAAAGACAGGAAGAAGGGCAAGAACAAGATGGCAGCCGAATAGAACCAGGTGGCCTATTCCGCTTCCCACGTACCATTGCACAGGGGATGCACTGAcacttttagttttatttatttatttatgtatttatttattctcattcattttaatgttttcatatatatatacactcacctaaaggattattaggaacacctgttcaatttc

Function

symbol description
bbs4 Acts upstream of or within several processes, including Kupffer's vesicle development; embryonic morphogenesis; and establishment of pigment granule localization. Predicted to be located in ciliary membrane and microtubule organizing center. Is expressed in eye photoreceptor cell. Used to study Bardet-Biedl syndrome and ciliopathy. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome 4; morbid obesity; and obesity. Orthologous to human BBS4 (Bardet-Biedl syndrome 4).

NR:

description
PREDICTED: Bardet-Biedl syndrome 4 protein isoform X1

GO:

id name namespace
GO:0090245 axis elongation involved in somitogenesis biological_process
GO:0035845 photoreceptor cell outer segment organization biological_process
GO:0046907 intracellular transport biological_process
GO:0032402 melanosome transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0046154 rhodopsin metabolic process biological_process
GO:0051877 pigment granule aggregation in cell center biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0001947 heart looping biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
K16531 BBS4; Bardet-Biedl syndrome 4 protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007738 True 1791 mRNA 0.48 16 28382047 28399893

Neighbor

gene id symbol gene type direction distance location
AMCG00007732 LOC107569349,LOC107754357 coding downstream 115550 28242317 ~ 28266497 (-)
AMCG00007731 NA coding downstream 187922 28183551 ~ 28194125 (-)
AMCG00007729 NA coding downstream 199522 28133538 ~ 28182525 (-)
AMCG00007728 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 coding downstream 253890 28104468 ~ 28128157 (-)
AMCG00007730 NA coding downstream 282778 28084686 ~ 28099269 (-)
AMCG00007737 NA coding upstream 787 28400680 ~ 28414910 (-)
AMCG00007739 NA coding upstream 26267 28426160 ~ 28429773 (-)
AMCG00007740 cyp11a2 coding upstream 38962 28438855 ~ 28453586 (-)
AMCG00007743 NA coding upstream 54921 28454814 ~ 28503390 (-)
AMCG00007742 NA coding upstream 146859 28546752 ~ 28549546 (-)
G25768 NA non-coding downstream 714975 27662224 ~ 27667072 (-)
G25750 NA non-coding downstream 817338 27564039 ~ 27564709 (-)
G25749 NA non-coding downstream 818357 27563240 ~ 27563690 (-)
G25748 NA non-coding downstream 819029 27562728 ~ 27563018 (-)
G25746 NA non-coding downstream 827937 27553497 ~ 27554110 (-)
G25968 NA non-coding upstream 276947 28676840 ~ 28702537 (-)
G25972 NA non-coding upstream 296572 28696465 ~ 28699849 (-)
G25985 NA non-coding upstream 332871 28732764 ~ 28732994 (-)
G25987 NA non-coding upstream 334219 28734112 ~ 28734449 (-)
G26092 NA non-coding upstream 631517 29031410 ~ 29049165 (-)
AMCG00007704 NA other downstream 1011528 27357731 ~ 27370519 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other downstream 2311199 26053764 ~ 26070848 (-)
AMCG00007684 shf,LOC108430988 other downstream 2750455 25630792 ~ 25631592 (-)
G25422 NA other downstream 3117096 25264332 ~ 25264951 (-)
AMCG00007637 NA other downstream 4100483 24262690 ~ 24281564 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other upstream 494800 28894693 ~ 28921123 (-)
AMCG00007768 NA other upstream 601156 29001049 ~ 29013947 (-)
AMCG00007817 NA other upstream 2792117 31192010 ~ 31246649 (-)
AMCG00007822 NA other upstream 2938823 31338716 ~ 31342792 (-)
AMCG00007835 LOC107594750 other upstream 3405006 31804899 ~ 31816151 (-)

Expression


Co-expression Network