AMCG00007739


Basic Information

Item Value
gene id AMCG00007739
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28426160 ~ 28429773 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007739
ATGACAGAGGAGGCTTCCAGGATCACAGGCTTTACCGTTGAAGACTCCACCCTGCTCCTGCATGGCCAGCCAGTGGAGACCATGACCCACAAAGAGGCTTTGACTTACTTCATGACTTTCCTTCGCAACCTCCACCAGCCCCTACTCGTGGCCCACAATGGCAAGAGGTTTGACTGCCCTGTGCTGGCCAGGACTCTGGATGAATTCTCCCTCAGGGATGATTTTAAGCAGGTCATGTGTGGCTTCCTGGACACTTTCCTCCTGAGCAAAGCTCTGTTCACTGATTTAAGGAAGTTCTCCCAGGAGTATCTGGTCAAATATTTCCTCGGAAAGTCCTACATGGCACACAATGCCCTGGAGGACGTCAAGGCTTTACAGGAGCTCTACAAGGCCTGGAGTCCAACCTCATCTGTCAAAAAGGAACACTGCCAGGGACAGTCTCTCCAAGAAGGGACAATGTGTGACATTATCCAGCTGTCTGCAGTCAGCGGAGACCACACCTTCAATGTATACATGGTTCCCAGGCAACCAATTCAGAGAGGGGCCTCTGTCATCACGGGATTCAGAGTCAGGAGACAACAGCTGTACCTACACAACCGGTCCCTGCCCACCAACACCCTTAGAGAGGCTTTGACATCCTTCCTGGCTTTCCTTCACATGTTCCACAAGCCTCTGCTTGCTGGTCACAACATCAGGAGGTTTGACTGTCCTGTGCTGCTCAGGGCACTGGATGAAGTCCACCTCAGAGGAGAATTCAAGCATACAATCTCTGGCTTCCTAGATACTCTGCTTTTGGCCAGAGAGCTGCTGAAGGACACTTCCATCCAGAGTTTTCGACAGGAGAATCTGGTCAAGATGATTCTTGGGACTTCCTATCAGGCTCACAATGCTCTAGAAGATGTCAAGGCTTTGCAGAGGCTCTGCTGTGCCTGGATGCCCACATCCGAGCAAGTTCTCAGACACACCTTCACTCTGGCGCAGATGGAAGCTCAGGCTTCACTCCTGCCACTCGTGCAGGGCAAAGCCATCTCCAAGCCCACAGCCAGCAAACTGGCCTCATGGGGCGTCACGCTTGAAAAGCTGAAGGAGGCTCAAAGGCAATGTCCACCTGATGGACTGAAGCAGCTGCTGGAGCCCCTGAAAGAAAACCTAAAGGATGCATCTTTCAGGACTATTGCTGGAAAGATCTCTGACTTCCTGAAACAGCTACAGTGTCCTGAGCTCAACAGAGCTGCCtcttaaacaaaacagagcagagaTACTGACTGACTCCTGGTCCACTTGAGCTACAGGATTGTCTGGCCCTTGTACTAGATCGTTTTTTGGCATGACCCCTGTTTCCAGCTCTTCATACCTTTGAGgatttaaggtgacctataaaactTGCAGCACTGTGAGTGAGTATCACTGAGTCACCAGAATGTCTAAGTTTTAACCCAAAGCAAAAGAATAACACTACTGCAGACCCAGCAATAGAATACATGCTTTTCCTTGCATGTTTCCAGTGTCCAGAAGGAAGAGAGAGCACACAAACAGCTGCTGTCCGTTTGTTAGTCTCCTGCCCTCttatttatgatattttttaaagtaattgaaTTTATCTTTAGATGTGGTAATGAcgtttaacaattaaataaaacatcttaaaatatgGCTCACTCTTCTAGTTTTTCTATCATGGAATTGTGGTATTATCACTTATTTGATCTTTTTATCgctaatttatttctcactgaGGCTCCCTGGAAACCAACTTGCACATTAAGAAATGTAACAAGTCAGTCACAAATCCTGACACAATGACGATTAATATGAGAATATCTGGCTTTAAGAATGAGCTAACCTTGACTGCATGAATGAAATCATGTAGGACAATGTTTActtttggttttcattactCCAAATGTGATGCCCTCCTATTATTAGAATATCAATCAGAAATAGATGTTTGCTTCtgacaagttaaattaaattctaaACATTAgttaataactaaaataaaaacttctgGCTTTTGTGCTGTGTTACTTTATAAGAAGtttattgacttttttt

Function

GO: NA

KEGG:

id description
K10054 PML, TRIM19; probable transcription factor PML

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007739 True 2055 mRNA 0.45 3 28426160 28429773

Neighbor

gene id symbol gene type direction distance location
AMCG00007737 NA coding downstream 11250 28400680 ~ 28414910 (-)
AMCG00007738 bbs4,LOC107754319 coding downstream 26267 28382047 ~ 28399893 (-)
AMCG00007732 LOC107569349,LOC107754357 coding downstream 159663 28242317 ~ 28266497 (-)
AMCG00007731 NA coding downstream 232035 28183551 ~ 28194125 (-)
AMCG00007729 NA coding downstream 243635 28133538 ~ 28182525 (-)
AMCG00007740 cyp11a2 coding upstream 9082 28438855 ~ 28453586 (-)
AMCG00007743 NA coding upstream 25041 28454814 ~ 28503390 (-)
AMCG00007742 NA coding upstream 116979 28546752 ~ 28549546 (-)
AMCG00007744 LOC107662462 coding upstream 149366 28579139 ~ 28581190 (-)
AMCG00007750 NA coding upstream 166222 28595995 ~ 28612241 (-)
G25768 NA non-coding downstream 759088 27662224 ~ 27667072 (-)
G25750 NA non-coding downstream 861451 27564039 ~ 27564709 (-)
G25749 NA non-coding downstream 862470 27563240 ~ 27563690 (-)
G25748 NA non-coding downstream 863142 27562728 ~ 27563018 (-)
G25746 NA non-coding downstream 872050 27553497 ~ 27554110 (-)
G25968 NA non-coding upstream 247067 28676840 ~ 28702537 (-)
G25972 NA non-coding upstream 266692 28696465 ~ 28699849 (-)
G25985 NA non-coding upstream 302991 28732764 ~ 28732994 (-)
G25987 NA non-coding upstream 304339 28734112 ~ 28734449 (-)
G26092 NA non-coding upstream 601637 29031410 ~ 29049165 (-)
AMCG00007704 NA other downstream 1055641 27357731 ~ 27370519 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other downstream 2355312 26053764 ~ 26070848 (-)
AMCG00007684 shf,LOC108430988 other downstream 2794568 25630792 ~ 25631592 (-)
G25422 NA other downstream 3161209 25264332 ~ 25264951 (-)
AMCG00007637 NA other downstream 4144596 24262690 ~ 24281564 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other upstream 464920 28894693 ~ 28921123 (-)
AMCG00007768 NA other upstream 571276 29001049 ~ 29013947 (-)
AMCG00007817 NA other upstream 2762237 31192010 ~ 31246649 (-)
AMCG00007822 NA other upstream 2908943 31338716 ~ 31342792 (-)
AMCG00007835 LOC107594750 other upstream 3375126 31804899 ~ 31816151 (-)

Expression


Co-expression Network