AMCG00007744 (LOC107662462)


Basic Information

Item Value
gene id AMCG00007744
gene name LOC107662462
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28579139 ~ 28581190 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007744
ATGGCAGAAATAACCCTGGGCTACCTTGGCTTGTGGACAGTGTTCATTGGCATTGCACAGTGCTGCCCAgagccctgtgtctgtgtggacaaATATGCCCATCAGTTTGCTGACTGTGCCTACAAGGATCTGCTCGTGGTGCCTGAAGGCTTGCCATCCAATGTGACAACCCTCAGCCTGTCTGCCAACAAAATCACATCGCTCCTGTCAACATCTTTCGTGGATGTCACCCAGGTTACGTCTTTATGGCTGGCCCACAACGAAATTGTGACCATCGAGAAGGGGACGCTGGCAGTGCTGGTGCAGCTAAGGAACCTGGATCTCAGCCACAACAAAATTGTCAATTTCCCCTGGGATGACTTGTACAACCTTACAGCCCTGCAGCTCCTCAAAATGAACAACAACGAAATGGTCAACCTGCCCAGAGATGCTTTCTCGACTCTCAAAGATCTGAGATCACTGCGCATAAATAATAACAAGTTCACTTCGATTCTGCAAGGGACATTCGACTCGCTGAGCTCAATGTCTCACCTTCAGATCTATCACAACCCATTCACTTGTTCCTGCTCCCTGGAGTGGCTGAGGGATTGGATTTCCAATGCCCAGATCTCTGTACCAGAGCAGGTTTCTATTGTATGTGAAGCTCCTGAGGACCTGAAAGGATTTCAGGTCTCAAAAATCCCTAAATTGAAATGTGAAGCTCCAACCGTGCGCATAACTACCCAGTCCAACATTGAAAATCTCAGTGAGGGCTCTATGGTGATGTTGCAGTGTGAAACTGAAGGGAGCCCCAAGCCAGACATCcagtggaaaataaacactgggAATCAAGAAATTGAGTTCAATTTGCCCGCTGCTGATACTGAAAATAATGACTTACCTTTGGTGAATTCTAAGCTGGGTGCCAATCGATTCCTGGCATTTAAAAATGGCACATTAATCATCCCCCGCATTAGCAGGAAGGAAGATGGTAGCTACACATGCTCAGCCACCAATGAACAGGGCAGTGAAGAGAGCTCAGTCAAAGTAGTAGTTTCTGGCACTGTGAAATATGCCAATACCATACAGGATGTGACCGACAATAAGTTCATTATTGAACGTAAGCCTGGGCCAAAGACCTCTGAAACCAATGTGATCAGCTGGCCAAAGCCAGAGGAGAGGAGTAAGACCTCACCAACCGGATCCAGCTACATTACTGTGAACTCTGAGCATGACGGACAGGGAGCCAAGATGCCATCTTTTGGTGACAAGTGTGGCATCAATGATGAAACTCAGTACATTTCTAACCATGCATTTAATCAGAGCTCTGATGAGCTTAAGCAGCACACCTTTGATTTTGGGGTCATTGCCTTGGAAGTATCAGAAACTGAAGCTAAAGTGCAGCTCAAAGCCTACCAGGTGTCTCCAGAGAAATTGCCCCTCCATATGTTATACCTATGTGTCAGCACAGGAAATGGGCACTCAGTGATTCAGTGGTCCAGGATAGGAGAAGGCCTAAATTCATATCGTTTTCAGGGTTTGGACCCTGGTACTAATTACACGCTGTGCCTCACATACACAGGGGAAGACTGCCAGGTCCAAGTGGTTTTCACGACTAGGAAGAAATTTCCTTCACTGCTCATCATAGTTGTAGTGAGCATGTTTTTACTAGCTTTGGCCACTGTTCCGTTATTGGGAGCTACCTGCTGCCACTTGCTGTACAAATACCAAGGCAAAACATACAAGCTAATCATGAAGGCACAGAACCCAGATCAGATGGAAAAGCACATGTCGGCCGACTTCGATCCCAGAGCTTCTTACGTTGAATCAGAGAAGAACTTCAATCCAAGTGAGCTGTGCGAGGAAGAGGGCGAGATCGAGGGGGAAGAGGGCGAAGGGGAAGGAGAAGTGGAGGGCAGTATGGTTAACGAGTCTATTACCGAGTCGCAGTCTAAAACTAACCAAGAGGAATTCGAGGTGGGTTCCGAGTACAGCGACCGATTGCCACTGGGGGCCGAGGCTGTGAACATCTCTGAAGAAATCAACGGCAACTACAAGCAGCCAGCTCGCTGA

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: immunoglobulin superfamily containing leucine-rich repeat protein 2-like

GO:

id name namespace
GO:0005515 protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007744 True 2052 mRNA 0.48 1 28579139 28581190

Neighbor

gene id symbol gene type direction distance location
AMCG00007742 NA coding downstream 29593 28546752 ~ 28549546 (-)
AMCG00007743 NA coding downstream 75749 28454814 ~ 28503390 (-)
AMCG00007740 cyp11a2 coding downstream 125553 28438855 ~ 28453586 (-)
AMCG00007739 NA coding downstream 149366 28426160 ~ 28429773 (-)
AMCG00007737 NA coding downstream 164229 28400680 ~ 28414910 (-)
AMCG00007750 NA coding upstream 14805 28595995 ~ 28612241 (-)
AMCG00007749 man2c1,LOC107682572,LOC106596370 coding upstream 42898 28624088 ~ 28637306 (-)
AMCG00007748 NA coding upstream 65821 28647011 ~ 28674262 (-)
AMCG00007762 NA coding upstream 173290 28754480 ~ 28761777 (-)
AMCG00007758 NA coding upstream 196565 28777755 ~ 28843806 (-)
G25768 NA non-coding downstream 912067 27662224 ~ 27667072 (-)
G25750 NA non-coding downstream 1014430 27564039 ~ 27564709 (-)
G25749 NA non-coding downstream 1015449 27563240 ~ 27563690 (-)
G25748 NA non-coding downstream 1016121 27562728 ~ 27563018 (-)
G25746 NA non-coding downstream 1025029 27553497 ~ 27554110 (-)
G25968 NA non-coding upstream 95650 28676840 ~ 28702537 (-)
G25972 NA non-coding upstream 115275 28696465 ~ 28699849 (-)
G25985 NA non-coding upstream 151574 28732764 ~ 28732994 (-)
G25987 NA non-coding upstream 152922 28734112 ~ 28734449 (-)
G26092 NA non-coding upstream 450220 29031410 ~ 29049165 (-)
AMCG00007704 NA other downstream 1208620 27357731 ~ 27370519 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other downstream 2508291 26053764 ~ 26070848 (-)
AMCG00007684 shf,LOC108430988 other downstream 2947547 25630792 ~ 25631592 (-)
G25422 NA other downstream 3314188 25264332 ~ 25264951 (-)
AMCG00007637 NA other downstream 4297575 24262690 ~ 24281564 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other upstream 313503 28894693 ~ 28921123 (-)
AMCG00007768 NA other upstream 419859 29001049 ~ 29013947 (-)
AMCG00007817 NA other upstream 2610820 31192010 ~ 31246649 (-)
AMCG00007822 NA other upstream 2757526 31338716 ~ 31342792 (-)
AMCG00007835 LOC107594750 other upstream 3223709 31804899 ~ 31816151 (-)

Expression


Co-expression Network