AMCG00007745 (aph1a,LOC103368490)


Basic Information

Item Value
gene id AMCG00007745
gene name aph1a,LOC103368490
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28637896 ~ 28646093 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007745
CCGCTGCGCTAGGACAGGAACAGCATCAGTTGTGTTGTGTGggtctgaatgaaaataaagagagaaacatCAATGCACAGATTTTCGGTTTTAGGTTTACATAGCTGTGATTCGTATGATAAGTGTCGTATGCTGTCGTCGTCGTGCTCTAGGGAGTCGTATGCCGAACCTTGAGTAAAAAAGAGAGATTTAAAGAACTTCCCTCCTGACCCAACCCAGAAATGACAACATCAGTGTTTTTCGGCTGTACGTTCATCGCTTTCGGCCCAGCGATCGCATTGTTCGTCTTCACGATTGCTAGGGACCCCCTGCGGGTCATCTTTCTGATTGCCGGAGCTTTTTTCTGGCTGGTGTCGCTACTGCTGTCCTCACTGGTGTGGTTCATTGCTGTGCAGATCAGCAACAAAGAAAATGCCTCCCAGCAGAAAGGACTCCTAATATTCGGGGTGGTGctgtctgtgctgctgcaggAAACCTTCCGCTTCGGTTACTACAAGCTGCTGAAGAAAGCAAATGAAGGTTTGCTGGCTCTCAGTCAAGAAGATGCAATGCCCATTTCAATACGACAGCTAGCATATGTGTCTGGCCTAGGGTTTGGCTTCATGAGTGGAGCCTTCTCAGTCGCGAACATCCTGGCAGACTCCTTCGGCCCGGGCACAGTGGGCATTCATGGAGATTCGCAGCACTATTTCATATCCTCAGccTTCATGACTATGGCTATCATCTTGCTTCACATGTTCTGGGGAGTGGTGTTCTTTGATGCCTGCGAGAAGAAGAGGTGGTGGTCTGTGGCTTTAGTTGTGCTGAGCCACCTGCTTGTGTCCTGCCTGTCATTCCTGAACCCACAGTATGAAGGGAGCCTCATCCCTGCCTACGTCATAATGTTTTTGATGGGCTCCTGGGCTTTCTTATCTGCTGGCGGATCTCTGAGAAACCTAAAACTCTGCTTAACCTGTAAAGACAAGGACTTCCTGCTGGCCAACCACCGGCCAAGATAACGCACACACACGCTGGGACATCTTCACAAACAAAATGACTCTTTTTGTACAAAGATGAGGAAACACTGGTTCAGTTATAtctcatttaatttttgtttttcattctcttattttttttcttctgtggtgGTGTTAGATTCTGGGTAGATAAGCACTGGAAACTATTCTGTAAAATCTGCAGATATCCATAAAGCAGGCAGGGCAGGAGTAATCCTACTGGGGGCTTCCTTACGTGGTTTCTCCACTGTCACTCAATCACTGTGTTTCCCGATGGGGCCGTCTGTACAGATAGGGAGGGAAGTGGTATCTTGATCTCTAAGCCCATCTATCCCTAGCCTCTCTTTCCTAAACAGCTTGCTAAAGTCTGCCCATTGTGCTGAACGGTGTGGTGGTTTGATGatgtggagtttgttccatCGGAGACGAGCTGGAGTGGAAGAAACTGCCCAGTTGTGTTGATGAAGCCGAGTCTCTGGGATCTTTCAAAAAACAGCGTGATGACATTCTGCGATTGATAAGTCACCAAATGAGCGGCATGGGCCGAACAGCCACCTTTCACTTGTTCTCTTTCTAAATGTTCTCTTATTCTCCCTCAGTTCACCTGTGACTTGAGCAAGATTTAGACCCAAGCCTTTTAGACCTAACAGGCTAGTGAATTTAGGTTGAGGTTCAGCTCAGATCAACTGGGGAACAAAACAGAAGGTATCCGATGTATGTCTTTAAATTGTTAtgcttacttttttttatttttttttactccctGTTTTGATGAGATTTAGTTCTGGTGGCGGAGTACACTGTTGTGCTTAATAGCTTTATTTCACGGTTTCTGTGGAGATTGTACTCCTTTGCTACCAGTTGCTTTGTGCTCTCTCTGGTACTGTGCCTTCTTTGCTCACTGAAGAGGTCATTTTAGTTAGCAATCATCTGGAAACATACCCACTTATTTAGAAACCAATTTACAGTACAGAGTAATACCATTACCGAAAACCATTGAAATTTAAATGCTTTGTAATTTCTATCATAGTGAAATTAACTGGAGCAATCATCCGTCAGATGATTTGAGTAACATTTAATCATATTGAAGTCATaagaccattaaaaaaaaaaaaaaaaaaaaaaagacttcgTAGATGAATACCCGAAGCATAAGTGCACCATCTTGCAGGAGATGACATTTTCTGAAGTGTGTAGAGTGAAAGTAATGAAATGAGCttagtaataataacagtaataatgcaattaataagCTTTACAAATTAGTGCTGCTAATTTCAGTAGTAATCCAAGTTAATCGCATTCCCTCAAGAGTTTTTCATCAATTCCTGCTAGATATTACTGCTGTTGCGATTCCAAATCTCTTTGCACTAGATGATAGAGAAATCAAGCATGTGTTTTGATTCAAGCTGATAATTTACTTAGGACCTCTCCCCAGGGGTAGTGTTTAGGTGGGGGGGAtctaaatcattacatttttacagtaattGAAAGTCTTCACTACATTTCTCACTtgattttactgtaatttcttATAATGATGGATGTACAGCCAATGGTAGcaatcttgtttattttactgatttgaactgtaaaacaaaccacacacaaaaaaatattgttaaaaacacttgtaaagtttttatttcttaatctaACGGGGACAACATTTTATAGATATGTTTTgactataaaatgaaaatgctcaGCGTAATTAAAGGTAATTTTTCTGATTCCTAatgctataataaataataatgctaaaACCACCACTGCCCAGTAAACTGAGGACCCTATTGAGAATCCCCATTCCTATAAAAGCAAGGAAACTAACAGTTTTTATCTTTTCTAAAGTTCATTACCTTGACAGAGGTGACAGAGAATGAGGTTACGGGCCATgttctcccccccccaccccaagagCCTTATGGGCTAGATATAGGGTTTATCTGGTAGTTATTCAAGTGACTCATTATATTGTGTTGGGAGGAAAGATGATCCTGGGAATCTGAGATGTGACTGACTTCTAATACCTCCAGGAGAGGTTCAAAAATCACTTTGTTCTTGAAGAAGAATGTCTGAATTTTGTTGAAAATTATCCCACCAccctgttacacacacacacatttcttcacACTCAGCACAAGGAGACATAAGAACATTTGCTGAAAAGGAAAATCCACTATACTTTTCAGGCAATAAATACGCTGTTTATATCTTcagatgtatgcatttgtttattctcTTTACTGGGGAGAATGTGTGATGCACTTTTTTTTAGGGCATTTATaacttctgaaaaataaaagaccatAGTTtagtattaaattaatctgatttgTTTAGGCCTTCAACTTGAATTCTTGTGTAGATTTTTATGATGGTTTGTTGTTTGAATTAGGGTCTAAGGATTATGATGTAGGCCTATTTTCTGAGTATTTagattttctgaaaaataaacctgCTCTTATATCACAGTAAGAGTAGGATCCTACTCTATCAAaattatacagtgttttaaaacattgtatatatatatataatatactgtaacaTTCATCTGGTAGACAAAATCATGTGAAACAAAGCCTAACCTGCATCCTCAgggttttattattgtattttgctgaATTTGTGCTTTTTCTTGCACTTCGaatagtttgtatttatgtgtaatCCTGAGGAAAGTGGTGTAAGCTGGAAATGATAAAGAATGgccaattaaaattgtttattgTATGAA

Function

symbol description
aph1a Enables endopeptidase activator activity and protein-macromolecule adaptor activity. Involved in several processes, including Notch receptor processing; amyloid-beta formation; and proteolysis. Located in Golgi apparatus and endoplasmic reticulum. Is integral component of plasma membrane. Part of gamma-secretase complex.

NR:

description
PREDICTED: gamma-secretase subunit Aph-1b

GO: NA

KEGG:

id description
K06172 APH1; gamma-secretase subunit APH-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007745 True 3738 mRNA 0.40 6 28637896 28646093

Neighbor

gene id symbol gene type direction distance location
AMCG00007747 NA coding upstream 13906 28619421 ~ 28623990 (+)
AMCG00007746 commd4,LOC105008267 coding upstream 20498 28612614 ~ 28617398 (+)
AMCG00007741 NA coding upstream 61646 28551820 ~ 28576250 (+)
AMCG00007734 NA coding upstream 199861 28431981 ~ 28438035 (+)
AMCG00007736 mpi,LOC106560745 coding upstream 216600 28414965 ~ 28421296 (+)
AMCG00007753 NA coding downstream 55888 28701981 ~ 28717335 (+)
AMCG00007751 NA coding downstream 77030 28723123 ~ 28729718 (+)
AMCG00007752 NA coding downstream 120622 28766715 ~ 28776364 (+)
AMCG00007756 NA coding downstream 286872 28932965 ~ 28936834 (+)
AMCG00007755 NA coding downstream 334730 28980823 ~ 28988913 (+)
G25827 NA non-coding upstream 528306 28104602 ~ 28109590 (+)
G25819 NA non-coding upstream 559775 28070346 ~ 28078121 (+)
G25753 NA non-coding upstream 1066405 27570543 ~ 27571491 (+)
G25709 ppib,LOC102792920,LOC107680152,LOC107577199,LOC107754356,LOC107673286 non-coding upstream 1068543 27566695 ~ 27569353 (+)
G25699 NA non-coding upstream 1281819 27355874 ~ 27356077 (+)
G25984 NA non-coding downstream 85037 28731130 ~ 28731401 (+)
G26103 frmd5,LOC107691145,LOC107556247,LOC103373640,LOC570903 non-coding downstream 428363 29074456 ~ 29082381 (+)
G26146 NA non-coding downstream 665530 29311623 ~ 29311944 (+)
G26167 NA non-coding downstream 721280 29367373 ~ 29367723 (+)
G26171 NA non-coding downstream 728283 29374376 ~ 29375878 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other upstream 183189 28438644 ~ 28454707 (+)
G25822 NA other upstream 543155 28083822 ~ 28094741 (+)
AMCG00007640 NA other upstream 4138246 24476487 ~ 24499650 (+)
AMCG00007631 NA other upstream 4443415 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 4967817 23657850 ~ 23670079 (+)
AMCG00007754 NA other downstream 36078 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 253965 28900058 ~ 28911566 (+)
AMCG00007769 acsbg1 other downstream 357002 29003095 ~ 29006379 (+)
AMCG00007788 NA other downstream 976218 29622311 ~ 29724734 (+)
G26258 tpm1,tpma,LOC108237348 other downstream 1108947 29755040 ~ 29819552 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_04424762_04428710 APH1B coding CI01000026 null 4424762 ~ 4428710 (+)