AMCG00007746 (commd4,LOC105008267)


Basic Information

Item Value
gene id AMCG00007746
gene name commd4,LOC105008267
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28612614 ~ 28617398 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007746
CTCTTGTTGTCACATTTTAATAtcagttacattattttaagacaGATGTTTAAGAAATATGATCCTACGGTCTTTGATATTAACTACTGTTGAAACTCAAAATGCTTCGGATAGAGAAACTCACGTCTAGCTGGCTCATACTAGCAAGCGATTCCGGTTTTGTGGAGACCTGGACTGCCCGGACTGGGTTCTGGCGGAAATCAGTACCCTAGCGAAAATATCTAGTGTAAAGATGAAGCTGTTGTGTATTCAAGTGCTGAAGGAAATCCTCGGTGAGGGCATTGATTATGAAAAGGTTGCAAAACTGACTTCCGATGCTAAGTTCGAAAGTGGAGATATAAAAGCCAGTGTTGCAGTTCTGAGTTTCATCCTCTCTAGTGCTGCCAAGCACAGCGTAGACAGCGAGTCCCTCTCCAGTGAGCTGCAGCAGTTGGGGCTGCCTAAAGAGCACACCACTGGACTGTGCAAGTCTTATGAGGACAAGCACGCTGCCCTGCAGGAAAAACTGAGGGAGAGCAGCCTGCGTTTGAATCGTCTGGAGTCTGTCTCATGGAGGGTGGACTACACTCTGAGCTCCAGTGAGCTGAAGGAGGTGAACGAGCCCACGGTCCTGCTCAAACTCCAGGTGCAGGGAGCGCAGTCCAGCACCATGGAGCCCATGGTCgtctctctcactgcagacaAGTTCCGAGTGCTGCTCACAGaGCTCAAACAAGCCCAAGCCATGATGAATGCACTAAACTGAGGAAGAGCAGTTTCTATTTAATCTCTCTGTACcagttgtttttgtatgtttgtacatATTGTACACATGAATACACGAGCATAATGaactttaatgttttcagtCGTGTAAATTGTTGTGAAGCGTGATTTGCATCATTTACAGTGTGGGTTCCTTTGTACTGGCTGTGAATTGATCATACTTCAGAATGTGAGAAAGTTGTGGGGGCATATCTTTAAAAGCATTCCTTGACTCACCCTCTACTGATAAGTGATGATACATTTTGTGcataatttgcttttttgtgaAGGAGGATGCATCTTTCTGCATTATGACAGATGCCCAGGAGCTCTGCAAAGTATGTGGGTGTTTATGATTTTTTCTTACAGCAGTTCTACAGCAGGAGTCATCAATGTGGGAATGTAGTAACCAGCCTTCAATAGGGTTTTATGTGTGGAGCaaataaagaggaaaacaatTGTATTGCCCTGGAAGTGTTGGGGatatacagtgtgtatgtatatacatatatattaaatcacatGTTACTACTTCAATGGGAATCCCGTCTGTCTGCAAAGGATAAAACCAAAAGTTAATAGTATAATGGACCAATGCTATGTTTATAATACCcacttattattttactatatacTTTCTTTTGTGTCCTTTAGTAATATATGTCTCCCTGGATAATGACTTCttctaataaatattattatacataataataataataataataataataataat

Function

symbol description
commd4 Orthologous to human COMMD4 (COMM domain containing 4).

NR:

description
COMM domain-containing protein 4

GO: NA

KEGG:

id description
K22560 COMMD4; COMM domain containing 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007746 True 1480 mRNA 0.41 8 28612614 28617398

Neighbor

gene id symbol gene type direction distance location
AMCG00007741 NA coding upstream 36364 28551820 ~ 28576250 (+)
AMCG00007734 NA coding upstream 174579 28431981 ~ 28438035 (+)
AMCG00007736 mpi,LOC106560745 coding upstream 191318 28414965 ~ 28421296 (+)
AMCG00007733 LOC107745566 coding upstream 234362 28367268 ~ 28378252 (+)
AMCG00007725 NA coding upstream 556757 27965346 ~ 28055857 (+)
AMCG00007747 NA coding downstream 2023 28619421 ~ 28623990 (+)
AMCG00007745 aph1a,LOC103368490 coding downstream 20498 28637896 ~ 28646093 (+)
AMCG00007753 NA coding downstream 84583 28701981 ~ 28717335 (+)
AMCG00007751 NA coding downstream 105725 28723123 ~ 28729718 (+)
AMCG00007752 NA coding downstream 149317 28766715 ~ 28776364 (+)
G25827 NA non-coding upstream 503024 28104602 ~ 28109590 (+)
G25819 NA non-coding upstream 534493 28070346 ~ 28078121 (+)
G25753 NA non-coding upstream 1041123 27570543 ~ 27571491 (+)
G25709 ppib,LOC102792920,LOC107680152,LOC107577199,LOC107754356,LOC107673286 non-coding upstream 1043261 27566695 ~ 27569353 (+)
G25699 NA non-coding upstream 1256537 27355874 ~ 27356077 (+)
G25984 NA non-coding downstream 113732 28731130 ~ 28731401 (+)
G26103 frmd5,LOC107691145,LOC107556247,LOC103373640,LOC570903 non-coding downstream 457058 29074456 ~ 29082381 (+)
G26146 NA non-coding downstream 694225 29311623 ~ 29311944 (+)
G26167 NA non-coding downstream 749975 29367373 ~ 29367723 (+)
G26171 NA non-coding downstream 756978 29374376 ~ 29375878 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other upstream 157907 28438644 ~ 28454707 (+)
G25822 NA other upstream 517873 28083822 ~ 28094741 (+)
AMCG00007640 NA other upstream 4112964 24476487 ~ 24499650 (+)
AMCG00007631 NA other upstream 4418133 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 4942535 23657850 ~ 23670079 (+)
AMCG00007754 NA other downstream 64773 28682171 ~ 28700062 (+)
AMCG00007763 tbc1d2b other downstream 282660 28900058 ~ 28911566 (+)
AMCG00007769 acsbg1 other downstream 385697 29003095 ~ 29006379 (+)
AMCG00007788 NA other downstream 1004913 29622311 ~ 29724734 (+)
G26258 tpm1,tpma,LOC108237348 other downstream 1137642 29755040 ~ 29819552 (+)

Expression


Co-expression Network