AMCG00007749 (man2c1,LOC107682572,LOC106596370)


Basic Information

Item Value
gene id AMCG00007749
gene name man2c1,LOC107682572,LOC106596370
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28624088 ~ 28637306 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007749
GCAGGCTGTAGTGACTCGTAAGTGTGCTGAACAAATGGCAATGTATCATCAACCCGTGTTGAAGAACCGGCGAACCCTACTGGAACGAGTAGAGAAGTTTATTTCTGACATTTATTTCACCGATTGCAATCTCAGAGGAAGgctCTATGGCGACACTTTCCCTGTAGAGTCTCTGTCTTCATTCCTCACTCCCAAACGAATTCCTTTCTCAGAAGCCATCAAACAGAATTTCCAACCATGTAAGGTCGGGGACAGCTTTGGACCTACATGGTGGACATGTTGGTTTAAAGTGTCTTTGACTATCCCTAATGCCTGGATGGGGAAAGAGGTTCACTTGCGATGGGAGAGTGATGGAGAGGGGATGGTTTGGAGGGATGGGCAGCAGCTTCAGGGCCTAacaaaggagggagagaagacaATCTACATTTTGTCAGAGAGCCTGACAGATGAGGCGCCACATAGTGTCACCCTATATGTGGAGGTGGCCTGTAATGGACTGTTTGGTGCCGGACAGGGATCCATGATCGCACCCCCTGACCCTGACAGGAAGTACTCCGTCCAGAGGGCAGAGTTGGCAGTGTTCAATCGTGACGTCAGTGCATTACTGACAGACTTTGAGATGCTTGTTGACATTGCGAAGTTGCTAGGTGAGAGTGAGCAGAGGGGCTACCAGGCCTTGTACACAGCCAATGAGATTGTGAACCTGTGTGACCCCACTGACCCAGGCACCTTCCCCGCCGCCCGCAAGCTGGCACAGAGGTTCTTCAGCCAGAGGAACGGCCAGAGCCAGCACACCGCACACGCTATGGGCCACTGCCACATCGACTCCGCCTGGCTGTGGCCTTATGAGGAGACGATCCGAAAGTGCGCCCGCAGCTGGGTGACTGTCATTCGTCTCATGGAGAAGAACCCAGAGTTCATTTTCACCTGCTCCCAGGCCCAGCAGTTCGAGTGGGTGAAGAGTTGGTACCCTGGCCTCTACTCCCAGATCCAGCGCTTTGCCAGCAAGGGTCAGTTTGTTCCTGTTGGAGGCACATGGGTGGAAATGGATGGAAACCTGCCCTCGGGGGAGTCCATGGTGAGACAGTTCCTGGAAGGACAAAGATTCTTCTACAAAGAGTTTGGGAGGTACTGCTCTGAGTTCTGGTTACCAGATACATTTGGATACTCGGCACAGCTTCCACAGATTATGCGGGGCTGCGGGATAACTCGATTTCTGACTCAGAAACTCAGCTGGAATCTGGTCAACACTTTCCCTCATAACACCTTTTTCTGGGAAGGCCTGGATGGCTCGCAGGTTCTGACGCACTTCCCCCCTGGGAACTCGTACGAGATGAAGTGCAAAGTGGAGGACctgctgAACACTGTGAGGAACAACAAGGACAAGGGGAGGGCCAATCACAGTGCGGTGCTATTTGGATACGGTGACGGTGGTGGGGGACCCACGCAGATCATGTTAGATCGACTACAGCGGGTCTGGGACACGGACGGCTTGCCCAAGGTCCAGATGTCCACTCCTGACAAACTCTTCACAGAGCTCGAAGATGACTCTGCTCTCCTCTGCACCTGGACTGGAGAATTATTCCTGGAGCTACACAACGGCACCTACACAACGCAGGCtcaaATAAAGCTGGGGAACCGCCAGTGTGAAGCTCTACTCCATGACATTGAGGTGGCGAGCAGTCTGGCCCTCTGCAGGGGCAAGAGCTTCCAGTACCCCTCGAAAAAGCTTCAGGAGCTGTGGAGacTGCTGCTCCTCAATCAGTTCCATGACGTGATACCAGGCAGCTGTATCGAGATGGTAGTGCAGGACGCCCTCAAATACTACCAGGAGATCCACAGTGCTGGGGCAGATCTGCTGAAGGAGGCGTGTGGCGTGCTGGGGGCAGGAACAGGAGCTCCAGAGGCTAGTGGGAGTATGGCTCTCAACACCTTGCCATGGGAGCGCATGGAGGTCATTTCACTGCCAGGGGGCGCTACTCAGCCAAAATTAGccCTGGTCCAAGTCCCTAGCATTGGTGCTGCAGCAGTGACTGATTCTGTGGAGCCTGTGTGTCCTGTTTCTGTCACAACTCAGGCTGATGGTACAGTGGTGATGGACAACGGGATCATAAGAGTGGTTGTGGACAAGGCTGGGCGTGTGGTTTCCCTCTGTCTGGTTAAGTCAAAAAGGGAAGCCATTGCGGACGGTTCCACTGGGAATCAGTTTGTCCTGTTCGATGATGTCCCACTGTACTGGGATGCCTGGGATGTGATGGACTACCATCTTCAGACCAGGAAGCCAGTGAGCGAGCTAGTGCAGCCTGTTCACATTGTGTGTCCTGGGGGGCTTCGAGGCAGCGTGAGCTTCTCCCTGAGAATCAGTGGCCAGAGCTCCCTTTCCCAGGAGCTCATTCTGGACGCCATGTGTCCTTATGTTAAGTTCCAAACGCAGGTTGACTGGGCTGAGTCCCACAAGTTCCTGAAGGTGGAGTTTCCTGTGAGGGTGCGCAGTGCCAGCGCGACATACGAAATCCAGTTCGGTCACCTAGAGAGACCCACTCACAGGAACACCTCTTGGGACTGGGCCAGGTTCGAGGTTTGGGGTCACAAATGGGCTGACCTCTCTGAACATGGTTTCGGTGTTGCAGTGCTCAACGACTGCAAATACGGCTATTCAGCTTACAAGAACACACTCACCCTGTCTCTGCTTCGTGCTCCAAAAGCGCCAGATGCCAATGCTGATATGGGGAAGCACCAGTTCACTTACGCAGTCATGCCCCATGCAGGTTCCTTCCAAGACTCAGCGGTCATTCAAAGTGCGTACAACCTAAACTTCCCCCTGCGTCTGTTCCCCAGGGGAAAGAGTTCTTCTAACAATAGCTCTTCGAGTGCTTTCTCTGTGAGCTCTCCTGCCATCATCCTAGAGACCATAAAGCAGGCCGAAGACCGCACAGATGCCCTCGTAGTGCGCCTGTTTGAGTCCCACGGCAGCAGTGCGTCTGTCACCCTTGCTACCTCTCTTCCTGTGAAGGAAGCTGTGCATTGCGATCTCCTGGAGCGTCCCGATTCGTCTGCCACTGTACCGGTCACAGCCTCTGGAATCCCACTGACCTTTAAACCCTTCCAGATCATCTCCCTTCTCCTCATTCTCAAATGAAGGTTTTCACAAATCATGAACTACTCTAGTAAGTGGTGTGAAAGGGGGGCGCTGTTTCTATTAGTCAGGATAATACACATTATACACTAGCACTATGCATACAGTTCTTGGCTCCACGTAAATGTAAAGCCAGACGTGCAAGGTCAGTATGCCCCTGACACTAATGAATACTCTAGCATCTCTAAAGTTGAAGAACTCGAGTTAATATTCCATTTGGGACAAGCGAATCATAATCGTAATTCTCCCAGTATTTGATGAAGGAGGCTAATGGTTAGACATAAGAAACATTGTCATAAATTCTTCCAATTCTATCgatataaaatgtttacttaATTGGAAAAGCTGAAAAACATGAAGCATTATTCAATGTTatgaaaacatctgaaatacATTGCTTAGGTTTTTTCAATAAAACCGAAATGGAAGAATTAATCTggttatttgtttgattttgatcCTCTGAAATGCTAATAGCAACATTACTGTTGTGTATTTAGTTTAGAAGGTTTGTCATACTATTCCCTAAGTAGGTAGATATAATATCCATTTGCTGGAACAgtaaattagcattttaaactaatctgataattgaaaataattggtATTCTTCCA

Function

symbol description
man2c1 Predicted to enable alpha-mannosidase activity. Predicted to be involved in oligosaccharide catabolic process. Predicted to act upstream of or within mannose metabolic process. Orthologous to human MAN2C1 (mannosidase alpha class 2C member 1).

NR:

description
PREDICTED: alpha-mannosidase 2C1

GO:

id name namespace
GO:0006013 mannose metabolic process biological_process
GO:0004559 alpha-mannosidase activity molecular_function
GO:0030246 carbohydrate binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01191 MAN2C1; alpha-mannosidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007749 True 3751 mRNA 0.50 26 28624088 28637306

Neighbor

gene id symbol gene type direction distance location
AMCG00007750 NA coding downstream 11847 28595995 ~ 28612241 (-)
AMCG00007744 LOC107662462 coding downstream 42898 28579139 ~ 28581190 (-)
AMCG00007742 NA coding downstream 74542 28546752 ~ 28549546 (-)
AMCG00007743 NA coding downstream 120698 28454814 ~ 28503390 (-)
AMCG00007740 cyp11a2 coding downstream 170502 28438855 ~ 28453586 (-)
AMCG00007748 NA coding upstream 9705 28647011 ~ 28674262 (-)
AMCG00007762 NA coding upstream 117174 28754480 ~ 28761777 (-)
AMCG00007758 NA coding upstream 140449 28777755 ~ 28843806 (-)
AMCG00007761 NA coding upstream 225272 28862578 ~ 28866585 (-)
AMCG00007760 dapk2a coding upstream 229298 28866604 ~ 28878017 (-)
G25768 NA non-coding downstream 957016 27662224 ~ 27667072 (-)
G25750 NA non-coding downstream 1059379 27564039 ~ 27564709 (-)
G25749 NA non-coding downstream 1060398 27563240 ~ 27563690 (-)
G25748 NA non-coding downstream 1061070 27562728 ~ 27563018 (-)
G25746 NA non-coding downstream 1069978 27553497 ~ 27554110 (-)
G25968 NA non-coding upstream 39534 28676840 ~ 28702537 (-)
G25972 NA non-coding upstream 59159 28696465 ~ 28699849 (-)
G25985 NA non-coding upstream 95458 28732764 ~ 28732994 (-)
G25987 NA non-coding upstream 96806 28734112 ~ 28734449 (-)
G26092 NA non-coding upstream 394104 29031410 ~ 29049165 (-)
AMCG00007704 NA other downstream 1253569 27357731 ~ 27370519 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other downstream 2553240 26053764 ~ 26070848 (-)
AMCG00007684 shf,LOC108430988 other downstream 2992496 25630792 ~ 25631592 (-)
G25422 NA other downstream 3359137 25264332 ~ 25264951 (-)
AMCG00007637 NA other downstream 4342524 24262690 ~ 24281564 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other upstream 257387 28894693 ~ 28921123 (-)
AMCG00007768 NA other upstream 363743 29001049 ~ 29013947 (-)
AMCG00007817 NA other upstream 2554704 31192010 ~ 31246649 (-)
AMCG00007822 NA other upstream 2701410 31338716 ~ 31342792 (-)
AMCG00007835 LOC107594750 other upstream 3167593 31804899 ~ 31816151 (-)

Expression


Co-expression Network