AMCG00007753


Basic Information

Item Value
gene id AMCG00007753
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28701981 ~ 28717335 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007753
AGCGGATCGCACGGACATGGACGGGATCGTCTTCGGTAGTCGTTGGAAAAACGTGGACTGGTATCTTTTTGAATCAGGAACTGTCTTGCTGGCCTTGATTGGAGTAGACACGCTGTAAAAAAAAGATGGCGGCAGCGTGTGTAGTCTGAGagcttttgtaaataaaaaaaaaaaaatatatatatatatatattaaaaaaacctCGAAAACAGACGACAGGAGACGCTGCTACTATAGACAGATCACACCTAGTAATACACTACCGTACTCTCCCAGACCGCCATCCCCAGTCCTTTATCCCATCACACACTGGTAGGTCTGATGGAGTGCCCGCATCTAAACTCCAGTGTTTGCATCGCCCCGGATTCCTCCCGGTTCCCGAGCGGCTCTCCCTCGTCCTGGTGCTGCAGCGTGTGCCGCTCAAACAAAAGCCCGTGGGTGTGTCTGACCTGTTCAAGTGTGCATTGTGGACGgTATGTGAATGGACAtgcaaagaaacattttgaagaCACGCAGAGTCCAGCCAGCAATCACAAGAAATCAGAGAAGAATGAGAAGGAGAAGCCGCAGCACGCTGTGTGCATGGACTGCAGCAGCTACAGCACATACTGCTACAGGTGTGACGATTTTGTCGTGAATGACACCAAGCTGGGCATGGTGCAGAAGGTTCGGGAACATCTGCAGAACCTGGAGAACTCTGCATTTGCTGTCGATAGACATAGGAAAAGAAAACTATTGGAAAGCTCATCTCTAAACAGTAAGCTGCTCAAAGACAATGGTGGTGCCTCAGCGCTTTGTGCAACAGGCCTTCGCAATCTGGGAAATACATGTTTCATGAACGCCATTCTCCAGTCCCTCAGTAATATCCAACAGTTTTGCTGCTATTTCAAGGAGCTGCCTGCTGTGGAGCTGCGCAGTGGTAAAACAGCAGGGAGACGAATGTACCACACCAGGAGTCAGGGGGACACCAGTGTCAGCTCCCTCGTGGAAGAGTTCCGGAAGACTCTTTGTTCTTTGTGGCAGGGAAGTCAGACTGCCTTCAGTCCTGAATCACTATTCTATGTCATTTGGAAAATCATGCCAAATTTCAGGGGATACCAGCAGCAAGATGCCCATGAATTTATGCGATATCTGTTGGACCATCTGCACCTAGAACTTCAGGGGGACTGTAATGGAGTGTCCCGTTCCACTATCCCCCCGGATGGGGTCATGCTCTCTGCAGGGGGCAAATGCTGCATAAAGTTTGATCCATTCCTCGaCCTTTCCCTAGATATTCCAAGCCAGTTTAGAAACAAGAGAACAAAGAATCAAGAAAGTGGACTAATTTGCACCTTGCGTGACTGTCTGCGCAGTTTCACAGACCTGGAAGAACTTGATGAAACGGAGCTGTACATGTGCCATAAATGTAAAAAGCGTCAGAAATCGACAAAGAAATTTTGGATTCAGAAGCTGCCCAAGGTCTTGTGCTTGCACCTGAAAAGATTTCACTGGACAGCATATCTTAGGAACAAGGTAGACACGTATGTAGAGTTTCCACTGCGGGGCCTAGACATGAAGTGCTACTTACTGGAGCCGGAGAACAGTGGTCCAGAGAGCTGTCTATACGACCTTGCTGCAGTGGTTGTGCACCATGGATCTGGCGTGGGCTCGGGACATTACACAGCATACGCCACACACGAGGGACGCTGGTTCCACTTCAATGACAGCACGGTCACGCTGACGGATGAGGACACCGTGGTGAAAGCCAAGGCCTACATCCTCTTCTACGTCGAGCGGCAGACCAAATCCGGCACCGACGCCAAGCTTTAATACCTCCCCCTCACCTGCTGCGCTCTGAAGCCTTCAGACAATACAAAACTATTCCAGTTCTCCATCGACACTTGACCCAAAATGTCTTGATTTTCATTCATCATGCACTTTTCAAGTTGCTGTTGTGAATTCTTGAGtttgttgtataagtgctagtatttttatttttattttattttggttttaacaaATGTTTCATCCGAGAACCTTGGCGAAACTTAATTGctgctttaattttaaaattattttgtttttataaacatgaTTTCTG

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11986 USP3; ubiquitin carboxyl-terminal hydrolase 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007753 True 2081 mRNA 0.47 15 28701981 28717335

Neighbor

gene id symbol gene type direction distance location
AMCG00007745 aph1a,LOC103368490 coding upstream 55888 28637896 ~ 28646093 (+)
AMCG00007747 NA coding upstream 77991 28619421 ~ 28623990 (+)
AMCG00007746 commd4,LOC105008267 coding upstream 84583 28612614 ~ 28617398 (+)
AMCG00007741 NA coding upstream 125731 28551820 ~ 28576250 (+)
AMCG00007734 NA coding upstream 263946 28431981 ~ 28438035 (+)
AMCG00007751 NA coding downstream 5788 28723123 ~ 28729718 (+)
AMCG00007752 NA coding downstream 49380 28766715 ~ 28776364 (+)
AMCG00007756 NA coding downstream 215630 28932965 ~ 28936834 (+)
AMCG00007755 NA coding downstream 263488 28980823 ~ 28988913 (+)
AMCG00007767 idh3a,LOC107757767,LOC107659502,LOC103353692,LOC102780018 coding downstream 272378 28989713 ~ 29000085 (+)
G25827 NA non-coding upstream 592391 28104602 ~ 28109590 (+)
G25819 NA non-coding upstream 623860 28070346 ~ 28078121 (+)
G25753 NA non-coding upstream 1130490 27570543 ~ 27571491 (+)
G25709 ppib,LOC102792920,LOC107680152,LOC107577199,LOC107754356,LOC107673286 non-coding upstream 1132628 27566695 ~ 27569353 (+)
G25699 NA non-coding upstream 1345904 27355874 ~ 27356077 (+)
G25984 NA non-coding downstream 13795 28731130 ~ 28731401 (+)
G26103 frmd5,LOC107691145,LOC107556247,LOC103373640,LOC570903 non-coding downstream 357121 29074456 ~ 29082381 (+)
G26146 NA non-coding downstream 594288 29311623 ~ 29311944 (+)
G26167 NA non-coding downstream 650038 29367373 ~ 29367723 (+)
G26171 NA non-coding downstream 657041 29374376 ~ 29375878 (+)
AMCG00007754 NA other upstream 1919 28682171 ~ 28700062 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other upstream 247274 28438644 ~ 28454707 (+)
G25822 NA other upstream 607240 28083822 ~ 28094741 (+)
AMCG00007640 NA other upstream 4202331 24476487 ~ 24499650 (+)
AMCG00007631 NA other upstream 4507500 24192221 ~ 24194481 (+)
AMCG00007763 tbc1d2b other downstream 182723 28900058 ~ 28911566 (+)
AMCG00007769 acsbg1 other downstream 285760 29003095 ~ 29006379 (+)
AMCG00007788 NA other downstream 904976 29622311 ~ 29724734 (+)
G26258 tpm1,tpma,LOC108237348 other downstream 1037705 29755040 ~ 29819552 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other downstream 2696819 31414154 ~ 31440378 (+)

Expression


Co-expression Network