AMCG00007754


Basic Information

Item Value
gene id AMCG00007754
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28682171 ~ 28700062 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007754
TTTCTTTTCCAGCCATCAGATCACACTACCACAATGAGGAGCTTGCTTGCTGTTTTCTTGGTGGCTTTAATCGTGTCTACTGTACCAGTAAAGTACCAGaaTGCGAATTGGACATGGACCCGGGAACAGGCGACAAATTCCTTTTCCGCCTTttctacaataaaataacaaaacgtTGTGAGCCATTCATGTATAAGGGAAATGGGGGAAATGGGAATCGTTTCATTACCGACAAGATGTGCATGAAAAACTGCTCCGATGAGCCAGACAAATTTTACCCCAATGACAagGAAGCCTGCTTATTGACACTGCAGATTGGGGTTTGCTCCACTATTTACTTTGGTATTACAATATCTCCAAAAAAAGACTTTGTacctttaaaacaagaaaaggaagtAATTGAAATGGAGTAGACTGACTCTCCCAGCCATGCTGCACTGTATGATAgacatcagtgttttttttttttcttaatgttttatatattgtacttCTATAGTTCCTTAGAGGAAACCTAAAATTCATTaatgagataaaaaataataatctttaagACCTAATTGAAATGAAGGAAACCTGGATGTTATCTGAATGTAACTACTTAATTAAGGGTAATATAATATTACACTGGGTAACTGTTATATCATAGTAGAATTatgttgaaatgttcaatataaatgtaaagctTTATATTCTTGTGTAGTGTACTGAGgctgtattcattcatttcacacacacaagaaatcCATATctaaacattgtttatttgatgcattacaattttcttttttctttgatttacacaacatactCCACAACATTTAATGtgttgaaaaaactaaaccatttaaaataaaaacctgaaaagtcttcattacaGAAGTATTCACctcctttgctatgacactcctaaataagcttGGGTGCCTTCAGGattcacacaataagttgaATATATCTGGATGCaataaatatggttttaaaGACACAAGGCCATggagctttcaaaaacagacaaagcgaccctggagtggcttaaaaacaagaaagtgaatgttctatagtggcccagtcaaagtctgAACTTGAAtctgagaatctgtggcaagattTGAAGATTTAAGTCCACCAATGATTCCCATCCAATACTGAATactgcacaatccagatgttcAAACCTGGTAGAAACTTACCCTAAACAAtccacagctgtaattgctgtcgAAGGTGGTTCGACCAAGTTTTGACtcgggggtgaatacttctgtttcagtttttgtatttttcattaattgttgtttcacaataatatgtatattgcaTCTTCAaggtgttgagtaggttgtgcattttttaaaaatgtgattacaagggggtgaatacttcctatagccaatGTATCTGCATATATacatcattttttgtattgtattttttagtgGTCTGGCATCTGACGTTTTTCAACTGCAcggtttacaaaaataatatttttagaataaatgcacaataattaaataaaagtgttgtGTTGCTTTCCCCAAGTCACAGATTTCAGAGATTATACAGGTGTGTGTCCTATGACAGTCTTACCCAGCCTTTGGTGCACAACCTTCCAACAATACCTGCCACAcgataaacatttaaacacaaccTACTTTCATAACAAATCTGAACTTGTTCAGATGTGTTCTATCCTGGTGggaatattataattgtattaaatgagATGACACAACACTGTAAAACACAGCACACTAGTtgggaaatgctgctctgtaaATGAATTGTCTGGTAG
>TU32559
CTCATAGACAGAGTTTCTTTTCCAGCCATCAGATCACACTACCACAATGAGGAGCTTGCTTGCTGTTTTCTTGGTGGCTTTAATCGTGTCTACTGTACCAGTAAAGTACCAGaaTGCGAATTGGACATGGACCCGGGAACAGGCGACAAATTCCTTTTCCGCCTTttctacaataaaataacaaaacgtTGTGAGCCATTCATGTATAAGGGAAATGGGGGAAATGGGAATCGTTTCATTACCGACAAGATGTGCATGAAAAACTGCTCCGATGAGCCAGACAAATTTTACCCCAATGACAagGAAGCCTGCTTATTGACACTGCAGATTGGGGTTTGCTCCACTATTTACTTTGGTATTACAATGTAACCAAGCAGAAATGCAAGACCTTTTATTACACTGGCTGTGGAGGGAATGGAAACCGCTTTATTAGTCATGACATTTGCAATTCCACCTGTGCATACTACAATAtgacgtcagcgttcgggtccaaaaccggtggaaaagcgcgcCGGTTCCCAAAATCATCAGCTGCTTCCGAGGCCGAGCACCGGCtacttgtcggtggaaaagcgctaaaAAAGAGATACTGTAATTGAAGACGACGATGAAGATATTCCAGAAAAAAGTATCTGTGGGATTGATGGTAGGAAGCATCCTGTGGTGTTTTGGtgtaatcatcttcataattgtaattgtttttgttgtgacGGGAAAAAAATCTCCAAAAAAAGACTTTGTacctttaaaacaagaaaaggaagtAATTGAAATGGAGTAGACTGACTCTCCCAGCCATGCTGCACTGTATGATAgacatcagtgttttttttttttcttaatgttttatatattgtacttCTATAGTTCCTTAGAGGAAACCTAAAATTCATTaatgagataaaaaataataatctttaagACCTAATTGAAATGAAGGAAACCTGGATGTTATCTGAATGTAACTACTTAATTAAGGGTAATATAATATTACACTGGGTAACTGTTATATCATAGTAGAATTatgttgaaatgttcaatataaatgtaaagctTTATATTCTTGTGTAGTGTACTGAGgctgtattcattcatttcacacacacaagaaatcCATATctaaacattgtttatttgatgcattacaattttcttttttctttgatttacacaacatactCCACAACATTTAATGtgttgaaaaaactaaaccatttaaaataaaaacctgaaaagtcttcattacaGAAGTATTCACctcctttgctatgacactcctaaataagcttGGGTGCCTTCAGGattcacacaataagttgaATATATCTGGATGCaataaatatggttttaaaGACACAAGGCCATggagctttcaaaaacagacaaagcgaccctggagtggcttaaaaacaagaaagtgaatgttctatagtggcccagtcaaagtctgAACTTGAAtctgagaatctgtggcaagattTGAAGATTTAAGTCCACCAATGATTCCCATCCAATACTGAATactgcacaatccagatgttcAAACCTGGTAGAAACTTACCCTAAACAAtccacagctgtaattgctgtcgAAGGTGGTTCGACCAAGTTTTGACtcgggggtgaatacttctgtttcagtttttgtatttttcattaattgttgtttcacaataatatgtatattgcaTCTTCAaggtgttgagtaggttgtgcattttttaaaaatgtgattacaagggggtgaatacttcctatagccaatGTATCTGCATATATacatcattttttgtattgtattttttagtgGTCTGGCATCTGACGTTTTTCAACTGCAcggtt
>TU32560
CTCATAGACAGAGTTTCTTTTCCAGCCATCAGATCACACTACCACAATGAGGAGCTTGCTTGCTGTTTTCTTGGTGGCTTTAATCGTGTCTACTGTACCAGTAAAGTACCAGaaTGCGAATTGGACATGGACCCGGGAACAGGCGACAAATTCCTTTTCCGCCTTttctacaataaaataacaaaacgtTGTGAGCCATTCATGTATAAGGGAAATGGGGGAAATGGGAATCGTTTCATTACCGACAAGATGTGCATGAAAAACTGCTCCGATGAGCCAGACAAATTTTACCCCAATGACAagGAAGCCTGCTTATTGACACTGCAGATTGGGGTTTGCTCCACTATTTACTTTGGTATTACAATGTAACCAAGCAGAAATGCAAGACCTTTTATTACACTGGCTGTGGAGGGAATGGAAACCGCTTTATTAGTCATGACATTTGCAATTCCACCTGTGCATACTACAATAATACTGTAATTGAAGACGACGATGAAGATATTCCAGAAAAAAGTATCTGTGGGATTGATGGTAGGAAGCATCCTGTGGTGTTTTGGtgtaatcatcttcataattgtaattgtttttgttgtgacGGGAAAAAAATCTCCAAAAAAAGACTTTGTacctttaaaacaagaaaaggaagtAATTGAAATGGAGTAGACTGACTCTCCCAGCCATGCTGCACTGTATGATAgacatcagtgttttttttttttcttaatgttttatatattgtacttCTATAGTTCCTTAGAGGAAACCTAAAATTCATTaatgagataaaaaataataatctttaagACCTAATTGAAATGAAGGAAACCTGGATGTTATCTGAATGTAACTACTTAATTAAGGGTAATATAATATTACACTGGGTAACTGTTATATCATAGTAGAATTatgttgaaatgttcaatataaatgtaaagctTTATATTCTTGTGTAGTGTACTGAGgctgtattcattcatttcacacacacaagaaatcCATATctaaacattgtttatttgatgcattacaattttcttttttctttgatttacacaacatactCCACAACATTTAATGtgttgaaaaaactaaaccatttaaaataaaaacctgaaaagtcttcattacaGAAGTATTCACctcctttgctatgacactcctaaataagcttGGGTGCCTTCAGGattcacacaataagttgaATATATCTGGATGCaataaatatggttttaaaGACACAAGGCCATggagctttcaaaaacagacaaagcgaccctggagtggcttaaaaacaagaaagtgaatgttctatagtggcccagtcaaagtctgAACTTGAAtctgagaatctgtggcaagattTGAAGATTTAAGTCCACCAATGATTCCCATCCAATACTGAATactgcacaatccagatgttcAAACCTGGTAGAAACTTACCCTAAACAAtccacagctgtaattgctgtcgAAGGTGGTTCGACCAAGTTTTGACtcgggggtgaatacttctgtttcagtttttgtatttttcattaattgttgtttcacaataatatgtatattgcaTCTTCAaggtgttgagtaggttgtgcattttttaaaaatgtgattacaagggggtgaatacttcctatagccaatGTATCTGCATATATacatcattttttgtattgtattttttagtgGTCTGGCATCTGACGTTTTTCAACTGCAcggtt

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007754 False 1795 mRNA 0.35 4 28682184 28700062
TU32559 True 1842 lncRNA 0.37 7 28682171 28699741
TU32560 False 1727 lncRNA 0.35 6 28682171 28699741

Neighbor

gene id symbol gene type direction distance location
AMCG00007745 aph1a,LOC103368490 coding upstream 36078 28637896 ~ 28646093 (+)
AMCG00007747 NA coding upstream 58181 28619421 ~ 28623990 (+)
AMCG00007746 commd4,LOC105008267 coding upstream 64773 28612614 ~ 28617398 (+)
AMCG00007741 NA coding upstream 105921 28551820 ~ 28576250 (+)
AMCG00007734 NA coding upstream 244136 28431981 ~ 28438035 (+)
AMCG00007753 NA coding downstream 1919 28701981 ~ 28717335 (+)
AMCG00007751 NA coding downstream 23061 28723123 ~ 28729718 (+)
AMCG00007752 NA coding downstream 66653 28766715 ~ 28776364 (+)
AMCG00007756 NA coding downstream 232903 28932965 ~ 28936834 (+)
AMCG00007755 NA coding downstream 280761 28980823 ~ 28988913 (+)
G25827 NA non-coding upstream 572581 28104602 ~ 28109590 (+)
G25819 NA non-coding upstream 604050 28070346 ~ 28078121 (+)
G25753 NA non-coding upstream 1110680 27570543 ~ 27571491 (+)
G25709 ppib,LOC102792920,LOC107680152,LOC107577199,LOC107754356,LOC107673286 non-coding upstream 1112818 27566695 ~ 27569353 (+)
G25699 NA non-coding upstream 1326094 27355874 ~ 27356077 (+)
G25984 NA non-coding downstream 31068 28731130 ~ 28731401 (+)
G26103 frmd5,LOC107691145,LOC107556247,LOC103373640,LOC570903 non-coding downstream 374394 29074456 ~ 29082381 (+)
G26146 NA non-coding downstream 611561 29311623 ~ 29311944 (+)
G26167 NA non-coding downstream 667311 29367373 ~ 29367723 (+)
G26171 NA non-coding downstream 674314 29374376 ~ 29375878 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other upstream 227464 28438644 ~ 28454707 (+)
G25822 NA other upstream 587430 28083822 ~ 28094741 (+)
AMCG00007640 NA other upstream 4182521 24476487 ~ 24499650 (+)
AMCG00007631 NA other upstream 4487690 24192221 ~ 24194481 (+)
AMCG00007604 asb7,LOC107755647,LOC107662256,LOC107742335,LOC106562481,LOC102792420 other upstream 5012092 23657850 ~ 23670079 (+)
AMCG00007763 tbc1d2b other downstream 199996 28900058 ~ 28911566 (+)
AMCG00007769 acsbg1 other downstream 303033 29003095 ~ 29006379 (+)
AMCG00007788 NA other downstream 922249 29622311 ~ 29724734 (+)
G26258 tpm1,tpma,LOC108237348 other downstream 1054978 29755040 ~ 29819552 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other downstream 2714092 31414154 ~ 31440378 (+)

Expression


Co-expression Network