AMCG00007757 (tbc1d2b,LOC107757764,LOC107659498)


Basic Information

Item Value
gene id AMCG00007757
gene name tbc1d2b,LOC107757764,LOC107659498
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28894693 ~ 28921123 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007757
atgcatggAGGGGATGGGAGTGAGACACTTTCTCGTCGGGACTCCAGGATTGCGCCTGCCAGGTCCCTGGACACAGCCGACAGCGACACGGCCAAGGAGCAGTCCGCCAAGCTATGCGGCTACCTGAACAAGCTTGCGGGCAAGGGGCCGCTGCGGGGCTTCAAGACGCGCTGGTTTGTCTACGACCCCAGAAAATGTTATCTGTATTACTTCAAGAGTCGCCAGGACTCGCTGCCGCTGGGACACATTGAGATAGCCGATGCCTGCTTCAGCTACGATGTGGAAGCGGATGAAGGGCAGTTTGAGATCCACAGTAACGGGAAGGATTTTCTCCTCAAGGCACCCAACAGCCAGGTGAAGAAGTACTGgttgcagcagctgcagcagaagCGATGGGAATTCTGTAACAACCGGGCCTCCGTCTCCAGGGAAAGCTGGTGCTTCCCCACTGTGCCCGATCTGCCCACTGGCCTGGTTGCCAGAGATGCAGATGCTTTTATGTATGAGAAGCCGAATGAGACGACAGAGAGTGTGCGCAGTGAGTTTGCTGTGGATACTACATCTGAGGGCCTAGCTGGACTAGCCTACGCTGCCAGGAATCCTGCCACCCCGTCCAACACCCTCAACTCCCTCAGACACTGGGGCACTGAGCTGAGGAACTCTGTGTCCCAGCTGAGACAGGGCCGAGGGAACCCTGAGAATCGCCGCAGTGTTTTCTACACTGGCAGTGATGAGTGGGAGATGATTGACCCCCTCAACAAAGAGCTGCAGGACCAGATGGCTCTACAGGAGTTTTCGAAGAAATCTCACCCGGAAATGCACAGGAGTTCCGCGTTCAGCTTTGACTTTGGGCGCAATGCTTCACGGTCAAGGCGCCCCTTCCTCAGGGACATGATGGGCTCCAACAAGACCAGCAAGAGCACCGAGAGCTCTCCCGTCGAGTGGAACGGCAGCAAGTCCTCCGAGGCCCAGCTCAGGCTGCAGAGCCAGCAGGAGGAGCTGACCCACCTTCGTGAGGAGCTGGCCAGCCAGAAGGAGCTGGTGCGCTTGCTGCAGCAGACCCTGAAGAGCTCTCAATACGACAGGCGCTCCCTCAGCGGTCCCGAGGCTTCCCAGGACTCCCTGCAGCTGGTGCAGGAGAAAGATGAGCAGATCCAGGCCCTTTGTGGGCACATGGAGAAGCTGGGCCTGGAGAAGGAGAGTCTGCAGCAGGAGCTGAAGACCCTGAAGAACAAGGTGGGGGAGATCAATGACCAGCTGGGCATGCTGATGGAGACCATCCAGGCCAAAGACGAGGTGATCATCAAGCTTTCCCAGCAGAGCTGCACCGGGTGCGACAGCGCTGGCTCCCCAAACCGCGGAGCTGCAGACTGCACATCTCCGGCCTGCAAGGGGCTGCAGGAGCTGGACAATCTGAAGGACAGTCTACAGGGCTATAAATCCCAGAATAAGTTCCTGAACAAAGAAATTTTGGAGCTCTCGGTTCTTAGGAGGAACTCTGAAGTCAGAGAGAAGACTTTGGAAGCAAAgTACACGGCTCTGGAAGCCAAGCTGTGCCAGATTGAAAGTAAGTACCTGGTGCTGCTGCAGGAGGTGAACAACCCCGTGTGCTCCACAGAGCAGAGCCCAGCACGTGAGGTCATCTCCAGGCTGCTAGAAGACGCTCTGCAGGTGGAGAGCCCCGAGCAACAGGAGCACACCATCCTCAAACCACACCCTGTCAGCGAGTATGACGTATTTGGCTTCAAGACCGTGCCAGAAGACGATGAGGAAGAGAAGCTGGTGGCCAAAGTCAGGGCCCTGGACCTCAGGTCTCTCTCCCTGACCGACCAGGAGGTGTCTGTGGGTGTGAAGTGGGAGAATTACTTGGCCAGCATCATGAACAGAGAGATGGTGCGCATGCCAGAGCTGAAGACCCTGGTGCGTAGTGGCGTTCCCCACAAGCACCGCTGCAAAGTGTGGAAGTGGTGCATCTCCTTCCACGTCAAGAAGTTCCGGGACAGTGTAGCCGCCGACTACTATGCCCTGCTCCTGCAGAAAGCCCACGAGATTCAGAATCCGGCGTCCAAGCAGATTGAGCTGGACCTTCTGCGCACGCTCCCCAACAACAAGCACTATTGCTCCCCGGCCTCAGAGGGCATCCAAAAGCTGAGAAACGTCCTGCTTGCCTTCTCCTGGAGAAATCCAGATATCGGCTACTGTCAGGGGCTTAACAGGTATAGTATCATGTTTCGTTTTGCGTTGGCTCTCTTCAAGTACAAAGAGGATGAGATTCTCAAGCTGCAGGATTcgatgtgtatttttaaatatctccGCTATTTCACCCGTACAATCCTGGATGCAAGAAAGCTGATGAACATTGCTTTTGTGGACATGAACCCATTCCCGCTGAGACAGATCCAGAACCGGCGCACGTTCCACCTGGAGAAGGTGAGACTGGAGCTGACAGAGCTGGAGGCCATCCGTCAGGACTTCCTGCGCGAGAGAGAGACCAACACTGACGGCAGGAACCTCATCAGTGATGACGAGGAAGACAACTAG
>TU32688
AGATCATGTTTCGTTTTGCGTTGGCTCTCTTCAAGTACAAAGAGGATGAGATTCTCAAGCTGCAGGATTcgatgtgtatttttaaatatctccGCTATTTCACCCGTACAATCCTGGATGCAAGCTGATGAACATTGCTTTTGTGGACATGAACCCATTCCCGCTGAGACAGATCCAGAACCGGCGCACGTTCCACCTGGAGAAGGTGAGACTGGAGCTGACAGAGCTGGAGGCCATCCGTCAGGACTTCCTGCGCGAGAGAGAGACCAACACTGACGGCAGGAACCTCATCAGTGATGACGAGGAAGACAACTAGCAAGGGCCAATCAGCATTCCGGCTCCTCCTTTGACTGGACGACTGAGAGATCCTCCTCTCCAGTCCTGTacttggatttttttatttgtatttgccgCCCACTTCTTGTTGTGtgttcaattattattgtatttgtttgtttgtttttaccctttattttattttattttttcaagcgTGACCTCTGAGAAAGATTAGGAACAAAAACAGATCCGTTTCCCTGCATTCCTGCCAATCGATTATGATTGTCAATTTtcacttaatattttttttccgaggaggaggggaggtgggggacaGTCTAGTATGATCAGGATTAAAGTGATTTAATCTGCCTTGCTAGTGAATACAGTAAGATTAGCCATTCAATATGATAGACTGAATTTatgctaattaatttaaagaattaTACAAATGGATGCAGTGCAAATCTATTTTGGTTAGGTTAATAACTGATTTGAGGTCAAACGCCAATAGAACTCGTATAATTTAACAGATTCTTGTATATTATTGCTTTAGGCGTAAGGCGTAGGTACAAAAACATAAAGAGGTCTGTCGTATATCGTAATGTAGATAGACTACATTTGATTATCCACCCCTCATCAACAGTCTTCTCCTGCGTTTTCTAGCACTTGGATCACTTTACTTTCAAGGTTCTGTGAAGGACTGCACCAGGCATCCTCTGGGTGGCCCAAACAGAGTGGCGAACACGGAGGGATTATTCAGATGCAAAGTCAACAAGGCCACTGGCAATGCAGCACATGCATGCAGGTTTTCAGATTAGACAGGTGTGTGAAACTGAGGTGTAATCCTTTCATCAGTGACTGCAACCTGGAAAATATTATTCTCTGGGAAGAAATGTGTGGTTCATGCCTCAGTGTTGAACTCCTTCTTCGCCTGACTTTAGTCATCTCCATGGCTCTCTCTTTCTGGATTTTTGCACATGTATTCTAGCTCACCCccaaactttgtttttctcatttttcaattattttaaaactcttCTTGATGCTCTTCCTGAAGTTGCACGCTGCTGGCGGGGCTAATTCCTCCAACTGGTGCTTTGCAGCTATGAGAAGACTGACCATTGTAGACTAACCATCTGTCCTATGAATGGGAACACAAACCAGCCAGCCCACCCATTCCTGTTGTACCTGCCTGGAAACAGTATTTCACGGGGCTTGATCTGTGTTGGTGCTAGGAGCCACTCTCTCTGTTCTCCCATATCCTTGCATTGGGAATTGAAAATGCTTCTGAACCTATTTACAATCTGCTGAGGAATGGGCACTTATCCTTTCACTCCAGAGCTTGTCGTACCTGTATGGTGTTACTTTGTACTGCTTGTCTTTGACAGGCCTCAACTTCAAGCACTTTTTACCCCtaatattaattatgaatttgcATAGTTTGCATTCAGTTTCcacaataaaaagcattttccaGGACTCCAGAGCTTACTGCACAAGCCACCAGTTATTGTGGAACCTTATCATGACTTCAGCTGTTCTGTTTGCTGATTAAGTTATGCCAGCTATTTGCATACAcaattatttctatttattttttaaaaagcattcacAAATAGTGGGCACATTCTCTAATATTGCGAACAGGAAGACATCGGGAAGGTGTGACTGAGGTCTCCACAAGAGACCCGACCAGCCAAGCCAATTGGTGGATGTTCATTGACTCAGATGTTTCCTCAATATCAATAAGAACTGGACACATATGACATATTTTACTATGGAGGACCTGAAGAGTGTAATAGGAGATGCACCACTCAAGTAAACATCTAAAGACAAGAATGTTGTGAATTGAAAGGTACTATGAGCTGTCTTTTTGCAGCAGCACTTTTAGTtctggccttgctattgtttCTTGGCTTGCACCTTCTGTGAAACAGGCAATTCTGATCTAATTACATATGAAGTACAttcccttttcatttttcacatctACCTAAAGAATGATACCTTTGCTTTTATACAGGatctttatattttcattgttagGAGTAGAAAGACTCAGATTTGAAGCACAGAAAAGTATAGAAATATTGTTTCGGACGTTTCTTTGTGATTTAGTGTAGTGATCTTTACAAATCAGACAAGTCGGTTCTGACCATCAAGATTTTGTTTACTCATTTCACTTCACAAAATTATGAAGCATAATAGtaggatttaatttttttcctcccttttttgtttgtttgtattagaCTCGTACTAAAGCCACTGagtcaaaaatgaaaatattattgaatataCTGTGAACGTATTCAGTCGCTTCTGTCAGGGTGTTTTCTACTACGAGAGCTGGTCTCTCTAATGACCTAATCTCTGTGATATCAGAGCTTTCTTATCTTCAGAATCGTTTTTTGTTTCCTCACAGTTCTGAAAGTCTACAAACTGAAGGTTTTTCTGCTTATCAGAATGTAATTGCAGTGACAACTTACAGTGAGTGCAGTGTTACTACCAACTGTATACTATGGCAGTTCTTTAGATGACTGAATGTTTACATGAATCTGAGACCAATAGCCcttgattgttttgttaattttgtttcccCTACTAAAACAGTCTTGAGTTTTATTCCTGGGGGCTCAGTATTAAAGGctgtacaaaatgttttctgttggaAGTGTGTACTGGCCACTGTGGACAGAAAAATACAACCAACTCTCTATGATAATTTTTTTCTGCCATTGAATCAACCAGGAAATTAAATGatacaacatttacatttttttacatttgtaaactgTATACAGCTTTAAGGACAGATTGTctttactaatttaaatgtgtaaactcCATGTATGTCAGTTAATTCAACCATCTAATTACAATGCTGTTGGAAGTCttcaaaacatcaaatgtaATTGATGGATTATGTATTGTACTCTTGTGTAGTAGAAACATACTACTTAAACTGTCTGCAAATCTAGATTTATACagcacttaaataaataaattcttaaTGTAATAAGTCATAGAATATGTCTGACTATTTAAATAAGCTAAAGTGGCACATTCAATACACCTTCTCTCCTTACAGATGTTTTGTATGATATTATCACACCAGAGCTTTCCTCAGTAGAATATCGATAATACTGATGGGAACTTACTTATTTTCTAAATCGGCTTCATGTCTTGAATGTCATATGAAGAACCATAACAGAATTTTACTTCTGCAAGTTCAAGAATCCTGTAGTTATATAGCATCATAAACATTACACTATAAGAATTGGCATTTTTGTATCGGTAGCATGAC

Function

symbol description
tbc1d2b Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Orthologous to human TBC1D2B (TBC1 domain family member 2B).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007757 False 2541 mRNA 0.56 11 28897966 28921123
TU32688 True 3589 lncRNA 0.38 2 28894693 28898576

Neighbor

gene id symbol gene type direction distance location
AMCG00007760 dapk2a coding downstream 16676 28866604 ~ 28878017 (-)
AMCG00007761 NA coding downstream 28108 28862578 ~ 28866585 (-)
AMCG00007758 NA coding downstream 50887 28777755 ~ 28843806 (-)
AMCG00007762 NA coding downstream 132916 28754480 ~ 28761777 (-)
AMCG00007748 NA coding downstream 220431 28647011 ~ 28674262 (-)
AMCG00007759 cib2,LOC107757746,LOC107598895,LOC107698385,LOC107573330,LOC107752320 coding upstream 30496 28951619 ~ 28960104 (-)
AMCG00007770 frmd5,LOC108435336,LOC102299895 coding upstream 159028 29080151 ~ 29100489 (-)
AMCG00007771 frmd5,LOC108435336,LOC107562133 coding upstream 193257 29114380 ~ 29122313 (-)
AMCG00007772 NA coding upstream 312636 29233759 ~ 29256619 (-)
AMCG00007779 NA coding upstream 367946 29289069 ~ 29296557 (-)
G25987 NA non-coding downstream 160244 28734112 ~ 28734449 (-)
G25985 NA non-coding downstream 161699 28732764 ~ 28732994 (-)
G25968 NA non-coding downstream 192156 28676840 ~ 28702537 (-)
G25972 NA non-coding downstream 194844 28696465 ~ 28699849 (-)
G25768 NA non-coding downstream 1227621 27662224 ~ 27667072 (-)
G26092 NA non-coding upstream 110287 29031410 ~ 29049165 (-)
G26115 NA non-coding upstream 309820 29230943 ~ 29232708 (-)
G26147 NA non-coding upstream 390495 29311618 ~ 29311943 (-)
G26165 NA non-coding upstream 444501 29365624 ~ 29366245 (-)
G26231 NA non-coding upstream 687194 29608317 ~ 29608596 (-)
AMCG00007704 NA other downstream 1524174 27357731 ~ 27370519 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other downstream 2823845 26053764 ~ 26070848 (-)
AMCG00007684 shf,LOC108430988 other downstream 3263101 25630792 ~ 25631592 (-)
G25422 NA other downstream 3629742 25264332 ~ 25264951 (-)
AMCG00007637 NA other downstream 4613129 24262690 ~ 24281564 (-)
AMCG00007768 NA other upstream 79926 29001049 ~ 29013947 (-)
AMCG00007817 NA other upstream 2270887 31192010 ~ 31246649 (-)
AMCG00007822 NA other upstream 2417593 31338716 ~ 31342792 (-)
AMCG00007835 LOC107594750 other upstream 2883776 31804899 ~ 31816151 (-)
G26961 LOC101154678 other upstream 5948312 34869435 ~ 34869807 (-)

Expression


Co-expression Network