AMCG00007763 (tbc1d2b)


Basic Information

Item Value
gene id AMCG00007763
gene name tbc1d2b
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28900058 ~ 28911566 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007763
ATGCCGAGAGATTATTACACCAAGACGCTGCTGGGATCACAGGTTGACCAGCGAGTGTTCAAAGACCTGATGAGTGAGAAGCTACCGCGGCTGCATGCCCATTTTGAGCATTACAAAGTGGATTTCTCCCTCATCACCTTCAACTGGTTCCTCGTGGTGTTTGTGGATAGTGTTGTCAGTGATATCCTCTTTAAGATCTGGGATTCCTTTCTCTACGAAGGGCCAAAGGAGCAGGGCATAGTAGTCGGCGGCTACACTGTCCCGGAACTTCTTGACGTGGAAGGAGATGCACCACTTCCACACTTTGCAGCGGTGCTTGTGGGGAACGCCACTACGCACCAGGGTCTTCAGCTCTGGCATGCGCACCATCTCTCTGTTCATGATGCTGGCCAAGCCGGAGATGTGCAGTCTGCAGCTCCGCGGTTTGGGGAGCCAGCGCTGTCGCACCCGGGTCTTCAGCTCCTGCTGCAGACTCTCCTTCTCCAGGCCCAGCTTCTCCATGTGCCCACAAAGGGCCTGGATCTGCTCATCTTTCTCCTGCACCAGCTGCAGGGAGTCCTGGGAAGCCTCGGGACCGCTGAGGGAGCGCCTGTCGTATTGAGAGCTCTTCAGGGTCTGCTGCAGCAAGCGCACCAGCTCCTGgcacatagacacacagagaggaagaTGCATATGCAGCAGGGTCATACCTTCTGGCTGGCCAGCTCCTCACGAAGGTGGGTCAGCTCCTCCTGCTGGCTCTGCAGCCTGAGCTGGGCCTCGGAGGACTTGCTGCCGTTCCACTCGACGGGAGAGCTCTCGGTGCTCTTGCTGGTCTTGTTGGAGCCCATCATGTCCCTGAGGAAGGGGCGCCTTGACCGTGAAGCATTGCGCCCAAAGTCAAAGCTGAACGCGGAACCTATGTGA
>TU32676
ccttaatgtgcttcttcttgagccactcctttgttgccttggctgtgtgtttgttccCGCTCCTGTTCTACGTATGGTCTGGCGTGAGTCAGTTAATGTTGGggcctgttgttgttttcacgCAGGCTGGCAGCAATCGCACTCCTCTACTTGGAGGAAGAGGATGCATTTTGGTGCTTGATTGCCATCGTGGAGGTTTTCATGCCGAGAGATTATTACACCAAGACGCTGCTGGGATCACAGGTTGACCAGCGAGTGTTCAAAGACCTGATGAGTGAGAAGCTACCGCGGCTGCATGCCCATTTTGAGCATTACAAAGTGGATTTCTCCCTCATCACCTTCAACTGGTTCCTCGTGGTGTTTGTGGATAGTGTTGTCAGTGATATCCTCTTTAAGATCTGGGATTCCTTTCTCTACGAAGGGCCAAAG

Function

symbol description
tbc1d2b Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Orthologous to human TBC1D2B (TBC1 domain family member 2B).

NR:

description
PREDICTED: TBC1 domain family member 2B

GO:      GO:0005097,GO:0032313

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007763 True 906 mRNA 0.57 7 28900259 28911566
TU32676 False 429 lncRNA 0.49 2 28900058 28901126

Neighbor

gene id symbol gene type direction distance location
AMCG00007752 NA coding upstream 123694 28766715 ~ 28776364 (+)
AMCG00007751 NA coding upstream 170340 28723123 ~ 28729718 (+)
AMCG00007753 NA coding upstream 182723 28701981 ~ 28717335 (+)
AMCG00007745 aph1a,LOC103368490 coding upstream 253965 28637896 ~ 28646093 (+)
AMCG00007747 NA coding upstream 276068 28619421 ~ 28623990 (+)
AMCG00007756 NA coding downstream 21399 28932965 ~ 28936834 (+)
AMCG00007755 NA coding downstream 69257 28980823 ~ 28988913 (+)
AMCG00007767 idh3a,LOC107757767,LOC107659502,LOC103353692,LOC102780018 coding downstream 78147 28989713 ~ 29000085 (+)
AMCG00007765 NA coding downstream 113219 29024785 ~ 29032207 (+)
AMCG00007764 blm coding downstream 121188 29032754 ~ 29055451 (+)
G25984 NA non-coding upstream 168657 28731130 ~ 28731401 (+)
G25827 NA non-coding upstream 790468 28104602 ~ 28109590 (+)
G25819 NA non-coding upstream 821937 28070346 ~ 28078121 (+)
G25753 NA non-coding upstream 1328567 27570543 ~ 27571491 (+)
G25709 ppib,LOC102792920,LOC107680152,LOC107577199,LOC107754356,LOC107673286 non-coding upstream 1330705 27566695 ~ 27569353 (+)
G26103 frmd5,LOC107691145,LOC107556247,LOC103373640,LOC570903 non-coding downstream 162890 29074456 ~ 29082381 (+)
G26146 NA non-coding downstream 400057 29311623 ~ 29311944 (+)
G26167 NA non-coding downstream 455807 29367373 ~ 29367723 (+)
G26171 NA non-coding downstream 462810 29374376 ~ 29375878 (+)
G26196 LOC107575789 non-coding downstream 628117 29539683 ~ 29540062 (+)
AMCG00007754 NA other upstream 199996 28682171 ~ 28700062 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other upstream 445351 28438644 ~ 28454707 (+)
G25822 NA other upstream 805317 28083822 ~ 28094741 (+)
AMCG00007640 NA other upstream 4400408 24476487 ~ 24499650 (+)
AMCG00007631 NA other upstream 4705577 24192221 ~ 24194481 (+)
AMCG00007769 acsbg1 other downstream 91529 29003095 ~ 29006379 (+)
AMCG00007788 NA other downstream 710745 29622311 ~ 29724734 (+)
G26258 tpm1,tpma,LOC108237348 other downstream 843474 29755040 ~ 29819552 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other downstream 2502588 31414154 ~ 31440378 (+)
AMCG00007854 NA other downstream 4851947 33763513 ~ 33794941 (+)

Expression


Co-expression Network