AMCG00007765


Basic Information

Item Value
gene id AMCG00007765
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29024785 ~ 29032207 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007765
agttttgtatcacAGACACTATGGAGGTTGTTTTGTTGCTCCTGGCAGGGCTGCACACCGCATACTGCTCCCCCCTGCTCTCTGTAGAAGAAGAATATCTGTTCAAGTCATGGACGTCCCAGTTCAACAAACAGTACGAGCCCGACGAGTACTACCGTCGCCTGCAGATATTCACTGAGAATAAGAGAAGGATTGACCGTCACAATGCAGGAAACCACTCCTTCACCAtgggtCTCAATCAGTTCTCTGACATGACCtttgctgaatttaaaaaatccttCCTTTTGAGAGAACCTCagAACTGCTCTGCCACTAAAGGGAGCCATGTCAGCAGCAGCGGCACTTACCCAGACTCTGTGGACTGGAGGACGAAAGGGAAGTTTGTCACACCTGTAAAGAACCAGGGTGCCTGTGGCAGCTGCTGGACTTTTTCTACCACAGGCTGTCTGGAGTCTGTAATTGCCATTGCAACAGGGAAACTCCTCTTTCTGTCAGAACAGCAGCTGGTGGACTGCGCTCAGGCGTTCGATAATCATGGCTGCTCAGGTCATGCATTTGAGTACATCAAATATAACAAGGGACTCATGACAGAGGAAGGTTATCCATACACTGCAATGGATGGCCCATGCAAGTTCAACCCAAAGGAAGCTGCAGCTTTTGTGAAAGAGGTCGTCAACATAACAAAATATAATGAAATGGAGATGGTAGATGCGGTGGCCAGATTAAACCCTGTAAGCTTTGCATATGAGGTGACGTCTGATTTCATGCACTACCAGGATGGAGTTTACAGCAGataCTTCTTTATTGAGCGGGGGAAAAACATGTGTGGGCTAGCAGCCTGTTCCTCTTACCCTGTGCCTCTGGTGTGAAGTATGAAGACATGAAGAAGACTGagacaaaaagggaaaatgaacacacaaactGCACTCTAGTTCTGTTTCTTTAGAATTCACACTATACTGTTTACAGGTCCATTGCagccttaataataatatttgttttaaatcaaagggAAGTACCATTTCTTAGTAACTGTGaacacattgttattttttaacaataactgcaaatttaagtaaaagtaaaagtattttCTGCACATATCTAAACTTGCATATTATTGAGTGCCTTGTTTtctaatattacatattactaCGCAAATCTCATATGGATGACCAGCCTGCATTGTTGCTCTATGACCATTAACTCCTTAAAGCATGCTGTTAATACattatgtactatatatatatatatatatatatatatatactgctcaaaaaaattaagggaacactccaAGTTCATAAATCAATGTTATGTGTTCCCTTATTctttttgagcagtatatatatatatatatatataaattcaaacTACTGAAAATGTTGATGTATAAGAAGCACAAATACATGTGTACAATATAATggagatgtatttttaaatcaatgcaatGTACTCTAGGACTTGCTCATTGAGATTGTCTGTTGCTTTtgtgcttttataaataaagtctgattttattgatttaa

Function

GO:

id name namespace
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K01366 CTSH; cathepsin H

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007765 True 1529 mRNA 0.39 11 29024785 29032207

Neighbor

gene id symbol gene type direction distance location
AMCG00007767 idh3a,LOC107757767,LOC107659502,LOC103353692,LOC102780018 coding upstream 24700 28989713 ~ 29000085 (+)
AMCG00007755 NA coding upstream 35872 28980823 ~ 28988913 (+)
AMCG00007756 NA coding upstream 87951 28932965 ~ 28936834 (+)
AMCG00007752 NA coding upstream 248421 28766715 ~ 28776364 (+)
AMCG00007751 NA coding upstream 295067 28723123 ~ 28729718 (+)
AMCG00007764 blm coding downstream 547 29032754 ~ 29055451 (+)
AMCG00007766 NA coding downstream 26824 29059031 ~ 29071456 (+)
AMCG00007774 NA coding downstream 226223 29258430 ~ 29288693 (+)
AMCG00007775 NA coding downstream 289024 29321231 ~ 29336890 (+)
AMCG00007773 sec11a,LOC107691153 coding downstream 307439 29339646 ~ 29342580 (+)
G25984 NA non-coding upstream 293384 28731130 ~ 28731401 (+)
G25827 NA non-coding upstream 915195 28104602 ~ 28109590 (+)
G25819 NA non-coding upstream 946664 28070346 ~ 28078121 (+)
G25753 NA non-coding upstream 1453294 27570543 ~ 27571491 (+)
G25709 ppib,LOC102792920,LOC107680152,LOC107577199,LOC107754356,LOC107673286 non-coding upstream 1455432 27566695 ~ 27569353 (+)
G26103 frmd5,LOC107691145,LOC107556247,LOC103373640,LOC570903 non-coding downstream 42249 29074456 ~ 29082381 (+)
G26146 NA non-coding downstream 279416 29311623 ~ 29311944 (+)
G26167 NA non-coding downstream 335166 29367373 ~ 29367723 (+)
G26171 NA non-coding downstream 342169 29374376 ~ 29375878 (+)
G26196 LOC107575789 non-coding downstream 507476 29539683 ~ 29540062 (+)
AMCG00007769 acsbg1 other upstream 18406 29003095 ~ 29006379 (+)
AMCG00007763 tbc1d2b other upstream 113219 28900058 ~ 28911566 (+)
AMCG00007754 NA other upstream 324723 28682171 ~ 28700062 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other upstream 570078 28438644 ~ 28454707 (+)
G25822 NA other upstream 930044 28083822 ~ 28094741 (+)
AMCG00007788 NA other downstream 590104 29622311 ~ 29724734 (+)
G26258 tpm1,tpma,LOC108237348 other downstream 722833 29755040 ~ 29819552 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other downstream 2381947 31414154 ~ 31440378 (+)
AMCG00007854 NA other downstream 4731306 33763513 ~ 33794941 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other downstream 6578775 35610982 ~ 35620801 (+)

Expression


Co-expression Network