AMCG00007767 (idh3a,LOC107757767,LOC107659502,LOC103353692,LOC102780018)


Basic Information

Item Value
gene id AMCG00007767
gene name idh3a,LOC107757767,LOC107659502,LOC103353692,LOC102780018
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 28989713 ~ 29000085 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007767
GTGATGCTCTAGGTGGGTGGCGTCACAATGACTCGTGTTCACCCGGAAAAGGGCTTTGCTGTGCAGGAAGCGCATGTAGGGAGCCGCGGGACAGTACGGTACTACTGATAGACTGCACGGAAGCTAGCGCAGAGACAATGGCTGGAAACGCGTGGAGGTCAACGATCTTAAAGCTACTGGAAAAATATGGGTTACGGGTAGCCGGCAAGAGTAACACGCAGACACAGGAAGTGTCCCGTGTCATTGCTGCTGTAAAGAGCCAGCCCTCAGTCACAAGAAGTTATGGCAGCGGGgcACAGACTGTAACACTAATCCCCGGGGATGGAATTGGACCAGAAATTTCAAGTGCTGTGATGAAGATCTTTGAAGCTGCCAAAGCTCCAGTTCTGTGGGAGGAGAGAAATGTTACTGCGATTAAAGGCCCAGGAGGAAAGTGGATGATCCCTCCTGAAGCTAAAGAGTCGATGGATAAAAGCAAAATTGGATTAAAAGGTCCTTTAAAGACTCCCATTGCTGCTGGCCATCCCTCCATGAACCTGCTGCTTCGGAAAACCTTTGACCTTTACGCCAACGTGCGCCCATGTGTTTCCATCGAGGGCTACAAGACGCCCTACACTGATGTGAACCTTGTCACCATCCGAGAGAACACCGAGGGGGAGTACAGTGGCATTGAGCATGTGATTGTCGATGGAGTTGTACAGAGTATAAAGCTGATCACTGAAGATGCCAGTAGGCGTATAGCGGAGTTTGCATTTGAGTACGCCAGAAATAACCAGAGGAGCACAGTTACGGCAGTTCACAAAGCCAACATTATGCGTATGTCTGATGGACTTTTTCTGAGAAAATGTCGGGAAGTCGCTGAGAACTACAAGGATATTAAATTCACAGAGATGTATCTGGACACTGTGTGTCTGAATGTAAGATGTGACCTCTTTCTGACATTCgtattgaaataaaaagtgtttgatATTTCGTAAGTTTTCGCTTTCTTTTTAGATGGTGCAAGATCCAACACAATTTGATGTTCTGGTAATGCCCAACTTATATGGTGATATCCTGAGTGATTTGTGTGCTGGGTTGATCGGAGGCCTGGGTGTGACTCCTAGTGGGAACATTGGAGCCAATGGAGTTGCCATATTTGAATCGGTTCACGGCACTGCTCCGGACATCGCCGGCAAGGACCTGGCCAACCCCACTGCCCTGCTGCTCAGCGCTGTGATGATGCTGCGTCACATGGGGCTCCACAGTTACGCCACGAAAGCAGAGCGTGCCTGCTTTGACACCATCAACGACAAGAAGGTTCTGACCAAAGATCTTGGAGGAAACTCAAAATGTTCAGAATTCACAAACGAAATCTGCCGCAGAGTACTTGACATGGATTAAGACCCCTTCTCGGCTGCAATGGTGAAAACGGATAAATACATCAGTTACTTTAAAACCCTCCAGATCCATAGCATCCTGGTATATACAAACATTTCTattgtataaatacaaaaaaaactaactacTGTGGTTGACTTCtgaatgtctttcttttctgaaaacacaaagcagtgtCTTACACTTTGTTGTCTTTTGATTAGTGTCGGTGTACtttatttgcaaataattgctttaaatattctttatttattgaccAAAAAagcctttgattttttttattttggtaaaactCCTGTTTCGTCGGTGATGTAATATTGTCTGTCTCCAGAATCCCATTAAAGGGAAAGATGTTTTGAACCATGTTTTATCCTTCTTTTGTATTATAACATTTGGTGAGTCACTggttttgtgaagaaaaaaaactaaagttgcAGTATGAAATGTTACCTAAGCATACCTATTAAAATTTAATTCTTGCTCAAA

Function

symbol description
idh3a Predicted to enable isocitrate dehydrogenase (NAD+) activity. Predicted to be involved in isocitrate metabolic process and tricarboxylic acid cycle. Predicted to be active in mitochondrion. Is expressed in several structures, including alar plate midbrain region; mesoderm; musculature system; optic tectum; and pronephric duct. Human ortholog(s) of this gene implicated in retinitis pigmentosa 90. Orthologous to human IDH3A (isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha).

NR:

description
PREDICTED: isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X2

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0051287 NAD binding molecular_function
GO:0004449 isocitrate dehydrogenase (NAD+) activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K00030 IDH3; isocitrate dehydrogenase (NAD+)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007767 True 1866 mRNA 0.44 11 28989713 29000085

Neighbor

gene id symbol gene type direction distance location
AMCG00007755 NA coding upstream 800 28980823 ~ 28988913 (+)
AMCG00007756 NA coding upstream 52879 28932965 ~ 28936834 (+)
AMCG00007752 NA coding upstream 213349 28766715 ~ 28776364 (+)
AMCG00007751 NA coding upstream 259995 28723123 ~ 28729718 (+)
AMCG00007753 NA coding upstream 272378 28701981 ~ 28717335 (+)
AMCG00007765 NA coding downstream 24700 29024785 ~ 29032207 (+)
AMCG00007764 blm coding downstream 32669 29032754 ~ 29055451 (+)
AMCG00007766 NA coding downstream 58946 29059031 ~ 29071456 (+)
AMCG00007774 NA coding downstream 258345 29258430 ~ 29288693 (+)
AMCG00007775 NA coding downstream 321146 29321231 ~ 29336890 (+)
G25984 NA non-coding upstream 258312 28731130 ~ 28731401 (+)
G25827 NA non-coding upstream 880123 28104602 ~ 28109590 (+)
G25819 NA non-coding upstream 911592 28070346 ~ 28078121 (+)
G25753 NA non-coding upstream 1418222 27570543 ~ 27571491 (+)
G25709 ppib,LOC102792920,LOC107680152,LOC107577199,LOC107754356,LOC107673286 non-coding upstream 1420360 27566695 ~ 27569353 (+)
G26103 frmd5,LOC107691145,LOC107556247,LOC103373640,LOC570903 non-coding downstream 74371 29074456 ~ 29082381 (+)
G26146 NA non-coding downstream 311538 29311623 ~ 29311944 (+)
G26167 NA non-coding downstream 367288 29367373 ~ 29367723 (+)
G26171 NA non-coding downstream 374291 29374376 ~ 29375878 (+)
G26196 LOC107575789 non-coding downstream 539598 29539683 ~ 29540062 (+)
AMCG00007763 tbc1d2b other upstream 78147 28900058 ~ 28911566 (+)
AMCG00007754 NA other upstream 289651 28682171 ~ 28700062 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other upstream 535006 28438644 ~ 28454707 (+)
G25822 NA other upstream 894972 28083822 ~ 28094741 (+)
AMCG00007640 NA other upstream 4490063 24476487 ~ 24499650 (+)
AMCG00007769 acsbg1 other downstream 3010 29003095 ~ 29006379 (+)
AMCG00007788 NA other downstream 622226 29622311 ~ 29724734 (+)
G26258 tpm1,tpma,LOC108237348 other downstream 754955 29755040 ~ 29819552 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other downstream 2414069 31414154 ~ 31440378 (+)
AMCG00007854 NA other downstream 4763428 33763513 ~ 33794941 (+)

Expression


Co-expression Network