AMCG00007773 (sec11a,LOC107691153)


Basic Information

Item Value
gene id AMCG00007773
gene name sec11a,LOC107691153
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29339646 ~ 29342580 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007773
AGAGAGGCTGCAGTATGTTATCTTTTGATTTCCTCGATGATGTGCGGCGGATGAATAAACGCCAGCTCTACTACCAGGTACTGAATTTTGGTATGATAGTTTCTTCAGCGTTGATGATCTGGAAAGGCTTAATGGTCGTGACGGGGAGTGAAAGTCCAATTGTGGTTGTGCTCAGCGGGAGTATGGAGCCAGCGTTCCACAGAGGAGACCTCCTGTTCCTGACCAACAGAGTGGAAGACCCCATCAGAGTTGGTGAAATTGTGGTTTTCAGGATAGAGGGAAGAGAGATTCCAATAGTACACAGAGTTCTTAAAATACATGAGAAAGAAAATGGAGACATTAAGTTCTTGACTAAAGGTGACAACAATGCAGTAGATGACAGAGGCTTATACAAGCAAGGGCAGCACTGGTTGGAGAAGAAGGATGTTGTAGGGAGAGCCAGAGGatttgtgCCATACATTGGCATTGTTACAATTCTCATGAACGACTACCCAAAATTCAAGTATGCAGTTTTATTCCTCTTGGGTCTCTTTGTCCTGGTGCACCGTGAGTGAGGATTCCCTGACATGAAGGAAACGACTGCCAGGCTTATTACAGACGCATCACTCATGTAGAAAGAAAGGTTTTGTGTAATGTACAAGTTGAGTTTACCATTGGAAATCCTACAGTTGTACTTGGGGGTCAAAGACTATTTTTCTACTTGGTCTTCCCCGGCAGTGGTGTGAAACCAAAGCCCCAAGATTAAACCATAATTGCTTTGTCATCCAGGGAAAAGACTGCTGTCTCAATAAAGATGTGCTCTGTAATTTTTATGCATTTGCTGCCTCTTGCCAACTTcaattgcatatatatttttttttaatatttaaggtttttttaagtttgttttttgttaaatcaccATTTGGAAACTCTGCATCCTTCATGCCTTTTttagctttaaaaatacatctttaaacaaaactaaagctGGGATTCCTGTACCTTCGGCACCAATGCACAGGA

Function

symbol description
sec11a Predicted to enable peptidase activity. Predicted to be involved in signal peptide processing. Predicted to act upstream of or within proteolysis. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of signal peptidase complex. Orthologous to several human genes including SEC11A (SEC11 homolog A, signal peptidase complex subunit).

NR:

description
PREDICTED: signal peptidase complex catalytic subunit SEC11A

GO:

id name namespace
GO:0006465 signal peptide processing biological_process
GO:0006508 proteolysis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008236 serine-type peptidase activity molecular_function

KEGG:

id description
K13280 SEC11, sipW; signal peptidase I

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007773 True 1005 mRNA 0.41 6 29339646 29342580

Neighbor

gene id symbol gene type direction distance location
AMCG00007775 NA coding upstream 2756 29321231 ~ 29336890 (+)
AMCG00007774 NA coding upstream 50953 29258430 ~ 29288693 (+)
AMCG00007766 NA coding upstream 268190 29059031 ~ 29071456 (+)
AMCG00007764 blm coding upstream 284195 29032754 ~ 29055451 (+)
AMCG00007765 NA coding upstream 307439 29024785 ~ 29032207 (+)
AMCG00007776 NA coding downstream 8490 29351070 ~ 29351882 (+)
AMCG00007777 kti12,LOC107562123,LOC107715238,LOC107725737 coding downstream 12471 29355051 ~ 29361487 (+)
AMCG00007781 tspan3,tspan3a,LOC107690355 coding downstream 50327 29392907 ~ 29402001 (+)
AMCG00007785 NA coding downstream 90432 29433012 ~ 29437033 (+)
AMCG00007784 scaper,LOC106561156 coding downstream 95086 29437666 ~ 29485183 (+)
G26146 NA non-coding upstream 27702 29311623 ~ 29311944 (+)
G26103 frmd5,LOC107691145,LOC107556247,LOC103373640,LOC570903 non-coding upstream 257265 29074456 ~ 29082381 (+)
G25984 NA non-coding upstream 608245 28731130 ~ 28731401 (+)
G25827 NA non-coding upstream 1230056 28104602 ~ 28109590 (+)
G25819 NA non-coding upstream 1261525 28070346 ~ 28078121 (+)
G26167 NA non-coding downstream 24793 29367373 ~ 29367723 (+)
G26171 NA non-coding downstream 31796 29374376 ~ 29375878 (+)
G26196 LOC107575789 non-coding downstream 197103 29539683 ~ 29540062 (+)
G26243 LOC106587622,LOC106562410 non-coding downstream 383814 29726394 ~ 29729537 (+)
G26249 NA non-coding downstream 396122 29738702 ~ 29741082 (+)
AMCG00007769 acsbg1 other upstream 333267 29003095 ~ 29006379 (+)
AMCG00007763 tbc1d2b other upstream 428080 28900058 ~ 28911566 (+)
AMCG00007754 NA other upstream 639584 28682171 ~ 28700062 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other upstream 884939 28438644 ~ 28454707 (+)
G25822 NA other upstream 1244905 28083822 ~ 28094741 (+)
AMCG00007788 NA other downstream 279731 29622311 ~ 29724734 (+)
G26258 tpm1,tpma,LOC108237348 other downstream 412460 29755040 ~ 29819552 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other downstream 2071574 31414154 ~ 31440378 (+)
AMCG00007854 NA other downstream 4420933 33763513 ~ 33794941 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other downstream 6268402 35610982 ~ 35620801 (+)

Expression


Co-expression Network