AMCG00007779


Basic Information

Item Value
gene id AMCG00007779
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29289069 ~ 29296557 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007779
ATGAGAAgCTATGTCACGTATTTTGTTGCTGCCTGTGTGTTGGACTTTCATCGTGCCCTCGCCTTGGTGGTGCTCACAAGCgtggttgtgttttttgcacTCTACGGCCTACTGAAGAAATACCAGGGGAAGAGAATATACGACTGCTTCGAGCCCACCAGAAGATGTTTCAAGGCCAACCTGAGATGGATAAAATGGGTTTTCATCCTGATGGTTGTGGGTTTGCTGGTGGCCTGGATCGCGGTGGACACATCTAAACGGCCAGAGCAGCTGATTTCCTTTGGGGGGGTCTGCATGTTTGTAATCTTGCTGTTCATCTTCTCCAAACACCGGCGAGCGGTGTCATGGAGGGCAGTGTTCTGGGGCCTGGGGATAGAGTTTGTTCTTGGCCTGTTCATCATAAGGACCAATCCAGGCTTTGTTGCCTTCAATTGGCTTGGAACTCAAATACAGATATTTCTGAACTACACAACTGCTGGATCAGGGTTTGTCTTTGGAAAGAATCTCATACAAGAAGCCTTTGCCTTTCAGGCTTTGCCTATTGTGATCTTCTTCAGCTGTGTGATGTCTGTGCTCTACTACCTCGGATTTATGCAGTGGCTGATTATAAAGATTGCGTGGATCATGCAGATATCAATGGGAACCTCAGCCACAGAATCCTTAAGCGTGGCAGGCAACATATTTGTGGGACAGACTGAGGCTCCCCTGTTGATCCGCCCATATTTACCAGAAATGACCAAATCTGAAATCCACGCAGTCATGACAGGAGGCTTCGCTACCATAGCTGGCAGTGTGATGGGAGCATACATTATGTTTGGGATTGATGCATCCTCCCTGATCGCAGCATCGGTGATGGCTGCCCCCTGTGCTCTGGCCCTCGCCAAACTGTCCTATCCTGAAACCGAAGAGACCAAGTTCAAGGATGAGAAAGAGATCAAAATAGATAGTGGAAACGAGACAAATATTCTGGAGGCCGCCAGCAGCGGGGCTTCAGCCTCCATCTGCCTGGTGGCCAACATTGCTGCCAACCTGATCGCTTTCCTGGCCCTCTTGGAGTTCCTGAACGCAGCCCTGAGGTGGTTCGGAGGGATGGTTGATTACCCGGACCTCACGTTCCAGCTCATATGCTCATACCTTTTCATGCCAGTGGCGTTTATGATGGGCATGTCCACAGACGAAGCTTTTGTCGCCGCAGAGCTCATAGGCACTAAGATCTTCCTGAATGAATTTTTAGCCTATGAAAAACTGGCTCAGCTCAAGAAGAACAGGCTTAATGGCTTGGATGAATTTATCAATGGTGAAAAGCAGTGGATTTCTGTCAGAGCAGAAACCATTTGTACATATGCACTGTGTGGATTTGCTAACTTCAGCTCCCTGGGAATCGTGATTGGAGGGCTGTCCTCCATATCCCCTTCCCGAAGGAGTGACGTAGCTGACTCTGTGTTGAGGGCTCTGTTCACAGGCACTTGTGTGTCTCTGGTTAATGCCTGTGTGGCTGGGATTTTGTTTGTCCCACAGAAAGACTGTGTCCACTTTCTTCAAACCTCCCTCTTCAACAGCACTAGCAATGAGCTCAGTTCCTGCTGTACTGAACTCTATGAAAGCACTTCTTGGGACAGCGGGACTGTTGTATTTGAGGGAATTTGGTCTGGAGTGAAGAATGCCACCATCAGCTTTAACATCTGCTGTGGTCTCTTTAACAACACTGTATGTCATGGCTTGTAATCAGTCCACTAAACAACGCCTAGACAGGagagttttatattatttgcacAGTTTTGGAAAGATTTTATGATTGTATCTCGGAAGTCATATTATAGATGTGTGGAACTCTGTATTGTGTAAACTTCCTGACCTTCCCCCTCCCTTAGATTGTATATAATGTTGCATACAGTGTGTCAGCTACTAAATAAGGAActgtaatattttttgtcagctaatattttaaatctactgttaaaatgtttttgtatttaatccagTTAATACTGGATtaactaaatactaaatacttaattaaatacTTCAACCACACATTTTTCTACTTTTCATAAGCATGTTCTCTAAAACCTTTTAATATCAGCTACCACCAACTGACCTTTTGAATGACTGACACTTTACTTAAAGCCCAGTTTATTATAGTTAGATatgaatgaaatgtttttaaacctaAACCCTGCtaacttaaataattaaatgtttacattaagcaataaatacattgaataaagaaaggaa

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component
GO:0005415 nucleoside molecular_function
GO:0001882 nucleoside binding molecular_function

KEGG:

id description
K11536 SLC28A; pyrimidine nucleoside transport protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007779 True 2238 mRNA 0.44 15 29289069 29296557

Neighbor

gene id symbol gene type direction distance location
AMCG00007772 NA coding downstream 32450 29233759 ~ 29256619 (-)
AMCG00007771 frmd5,LOC108435336,LOC107562133 coding downstream 166756 29114380 ~ 29122313 (-)
AMCG00007770 frmd5,LOC108435336,LOC102299895 coding downstream 188580 29080151 ~ 29100489 (-)
AMCG00007759 cib2,LOC107757746,LOC107598895,LOC107698385,LOC107573330,LOC107752320 coding downstream 328965 28951619 ~ 28960104 (-)
AMCG00007760 dapk2a coding downstream 411052 28866604 ~ 28878017 (-)
AMCG00007780 NA coding upstream 79689 29376246 ~ 29377079 (-)
AMCG00007778 NA coding upstream 82487 29379044 ~ 29386305 (-)
AMCG00007783 NA coding upstream 108831 29405388 ~ 29427475 (-)
AMCG00007782 NA coding upstream 132098 29428655 ~ 29437506 (-)
AMCG00007786 LOC102216635,LOC103354952,LOC105930457,LOC105022634,LOC104917923,LOC106945593,LOC103149886 coding upstream 277777 29574334 ~ 29585227 (-)
G26115 NA non-coding downstream 56361 29230943 ~ 29232708 (-)
G26092 NA non-coding downstream 239904 29031410 ~ 29049165 (-)
G25987 NA non-coding downstream 554620 28734112 ~ 28734449 (-)
G25985 NA non-coding downstream 556075 28732764 ~ 28732994 (-)
G25972 NA non-coding downstream 589220 28696465 ~ 28699849 (-)
G26147 NA non-coding upstream 15061 29311618 ~ 29311943 (-)
G26165 NA non-coding upstream 69067 29365624 ~ 29366245 (-)
G26231 NA non-coding upstream 311760 29608317 ~ 29608596 (-)
G26342 NA non-coding upstream 1108441 30404998 ~ 30454628 (-)
G26352 anx2a,LOC105029377,LOC108433632 non-coding upstream 1135249 30431806 ~ 30437988 (-)
AMCG00007768 NA other downstream 275122 29001049 ~ 29013947 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other downstream 367946 28894693 ~ 28921123 (-)
AMCG00007704 NA other downstream 1918550 27357731 ~ 27370519 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other downstream 3218221 26053764 ~ 26070848 (-)
AMCG00007684 shf,LOC108430988 other downstream 3657477 25630792 ~ 25631592 (-)
AMCG00007817 NA other upstream 1895453 31192010 ~ 31246649 (-)
AMCG00007822 NA other upstream 2042159 31338716 ~ 31342792 (-)
AMCG00007835 LOC107594750 other upstream 2508342 31804899 ~ 31816151 (-)
G26961 LOC101154678 other upstream 5572878 34869435 ~ 34869807 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other upstream 6706636 36003193 ~ 36010995 (-)

Expression


Co-expression Network