AMCG00007780


Basic Information

Item Value
gene id AMCG00007780
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29376246 ~ 29377079 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007780
ATGGTCCTGAATTTTCTGCGCACCAAGAGCTCCTCCGACGTGCTGCTGCAGCCCACATGGGACCACATCCGGCTGCATCACCACTCCACTGTGTCGTCGCCCTTCTTCCCCGTGCTCATCGCCTTCTGCAGTTACTTGTCTTTCAGCCTCCCCTTTGCCATCATAGACCTCTTGGGGGAGAAGCTGCCCTTCTTCTACCGATACAAGATCCAGAAGGAAAGGCAGCCCACTGTGGGGTTAATGGCCACATGCTTGTGCCAGGTGGTGTACAAATACGTGGTGTTCGTGATCCCCGCCGTGGTCGTCAACAGCTTCGTGATGCCCTCATCCCCTCTGCACACCCGGGCGCCCTCTGTCCTGGAGCTGGCCACTGGGGTCCTGGGCTGCTTGCTACTGTTCGATTTCCAGTACTACCTGTGGCACCTGGTCCACCACAAGAACCGCTACCTGTACCGGAGCGTGCATTCCTACCACCACAGCTACACCGCCCCTTTCTCCTGGACCACGCAGCACCTCAGTGTGGTTGAGATGATGACCGTGGGCTTCTGGATCCAGACCAACCCTCTCCTGCTGGCCTGCCACCCCCTGACGGGTTGGACCTGCATAATCATCGGCACCTGGATGTCAGTGGAAGGCCATGTCGGCTACGAAATGCCCTGGGCTCTCAACAACATCATCCCCCTGGGCCTCTACGGGGGCACCCCAGCCCACGATATGCATCATCAGAAGCCTCATAGTAACTTTGCCCCCTTCTTCAGCCACTGGGACAAGATCTGCGGGACCGCCATCTCCGTGGACAGAGACACAAGACTCGTGCAAAAGGGGAACTTTTGA

Function

GO:

id name namespace
GO:0006694 steroid biosynthetic process biological_process
GO:0044283 small molecule biosynthetic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0044425 obsolete membrane part cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007780 True 834 mRNA 0.58 1 29376246 29377079

Neighbor

gene id symbol gene type direction distance location
AMCG00007779 NA coding downstream 79689 29289069 ~ 29296557 (-)
AMCG00007772 NA coding downstream 119627 29233759 ~ 29256619 (-)
AMCG00007771 frmd5,LOC108435336,LOC107562133 coding downstream 253933 29114380 ~ 29122313 (-)
AMCG00007770 frmd5,LOC108435336,LOC102299895 coding downstream 275757 29080151 ~ 29100489 (-)
AMCG00007759 cib2,LOC107757746,LOC107598895,LOC107698385,LOC107573330,LOC107752320 coding downstream 416142 28951619 ~ 28960104 (-)
AMCG00007778 NA coding upstream 1965 29379044 ~ 29386305 (-)
AMCG00007783 NA coding upstream 28309 29405388 ~ 29427475 (-)
AMCG00007782 NA coding upstream 51576 29428655 ~ 29437506 (-)
AMCG00007786 LOC102216635,LOC103354952,LOC105930457,LOC105022634,LOC104917923,LOC106945593,LOC103149886 coding upstream 197255 29574334 ~ 29585227 (-)
AMCG00007789 NA coding upstream 240192 29617271 ~ 29640100 (-)
G26165 NA non-coding downstream 10001 29365624 ~ 29366245 (-)
G26147 NA non-coding downstream 64303 29311618 ~ 29311943 (-)
G26115 NA non-coding downstream 143538 29230943 ~ 29232708 (-)
G26092 NA non-coding downstream 327081 29031410 ~ 29049165 (-)
G25987 NA non-coding downstream 641797 28734112 ~ 28734449 (-)
G26231 NA non-coding upstream 231238 29608317 ~ 29608596 (-)
G26342 NA non-coding upstream 1027919 30404998 ~ 30454628 (-)
G26352 anx2a,LOC105029377,LOC108433632 non-coding upstream 1054727 30431806 ~ 30437988 (-)
G26370 NA non-coding upstream 1233139 30610218 ~ 30611693 (-)
G26403 NA non-coding upstream 1423332 30800411 ~ 30875378 (-)
AMCG00007768 NA other downstream 362299 29001049 ~ 29013947 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other downstream 455123 28894693 ~ 28921123 (-)
AMCG00007704 NA other downstream 2005727 27357731 ~ 27370519 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other downstream 3305398 26053764 ~ 26070848 (-)
AMCG00007684 shf,LOC108430988 other downstream 3744654 25630792 ~ 25631592 (-)
AMCG00007817 NA other upstream 1814931 31192010 ~ 31246649 (-)
AMCG00007822 NA other upstream 1961637 31338716 ~ 31342792 (-)
AMCG00007835 LOC107594750 other upstream 2427820 31804899 ~ 31816151 (-)
G26961 LOC101154678 other upstream 5492356 34869435 ~ 34869807 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other upstream 6626114 36003193 ~ 36010995 (-)

Expression


Co-expression Network