AMCG00007783



Basic Information


Item Value
gene id AMCG00007783
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29405388 ~ 29427475 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00007783
ttttgaaactgtgtgtgcttgtgtgtgatttgtgtcaAGAAGCCACTTTAACTTCTCTGTATGAATCTTTTGGCctataaatagattttttgtatatatttaattattattttttggtttgttttagtttgtttgggTTGTCTTTGTGTTGCATACTTTTTCAAGAGTCGTGAACATCTGATTGAAGCAGGATTTACTATAGCCAGGATGACAGAACTACAATTTAAAGATGCCTTTTGGGGCACAGATTTCACCAACCACGTCGGCTACGAGATTCTCATACAGAGGCTGTGCGAGGGCCGGCGGATGTGCAAAGATGTGGAAGATCTGCTGAAACTGAGGGCCCAAGCAGAAGAGAGATACGGAAAAGAGTTGGTGACTATTGCTCGGAAGGCCGGGGGACAAACTGAGATAAATACTTTGAGAGATTCATTTGACCAACTCAAAACACAAATCGAAAACATTGGGAATCTGCACATGCATATGGCAGGCATGCTGAGGGAGGAGATGAAAAGAGTGGAGCAGTtcagagagaggcagaaagaACAAAGGAAGAAGTTTGAAGGAATTATGGAAAAGATCCAGAAGAATAAGGTGTCCTTATACAAGAAGACCATGGAGTCTAAGAAGATGTATGAGCAGAAGTGTAAGGAGGCCGACGAAGCAGAACAAGCACTTGAACGGATTAGCAACACGGCCACCGCCACCCCAAAGCAGACAGAAAAGGTGCAGAACAAGGCAAAGCAGTGCAGGGACGCTGCAAATGAAGCAGAGAAGCAATACATATCTAATGTTGAACAGCTGGACAAGACACGACAAGACTGGGAGAACACTCATGTGAGCACTTGTGAGATATTCCAGCAGCAGGAATGTGACCGGATCAATGTCCTGAGAAATGCACTGTGGGTTCACTGTAACCACTTCTCCATGCAGTGTGTGAAGGACGATGAGCTTTATGAGGAGGTGCGGAAGAGCCTGGAAACGTGTGACATCGCTGCAGACATCGACTGCTTCattcagaagaaaaagacaGCAATGAGTCCAGCAGCTCCGGTTGTCTTCGAGAGTTACTATGACAGGGAAGGCTCGGCTGACAGCAATGGAAGTGCCCGCTTCGGAGGAGGGGGTGTGATGAAGAGGTTTTCAAATCTACTGCAAGGGAACTGCAGCAGCTCGAGGGTGAATGTCAACGACTGTTCACAGCCTGCAGCATCCCCAAGTGCTGACAAGTCGGACGGAGTGTATGCATCCATACCTGGGTTTGAGAGTGGAGCTCTGGCAAGTGCCCCGTCTGAGCCTGTGGCGAGTGCCCCCCCAGAGCCTGTGAGCTACAAcgtaatatatgaatacattgcTCAGAACCATGACGAGCTGTCCATCTCCGTGGGGGACGTGGTGACGGTGATCGAGATAGGGGATGACGGCTGGTGGACAGTGGAGAGAAATGGACAGGCGGGGCTCGTCCCAGGATCTTACTTGGAGAGTGCCTGAGAAACCTGCAACCACCTTTCCACAGAGAGGAACAAAGGAACTATGGGAGTCGTTTTAAAGCAGCGGCACACAATCTACATTTGTGAACCCGGCCCTGGAAGGCCAAGCTCCTAATTTACATCTGAACTTTCTCCTACCTCGGGACCACAGAGTTTTATTTCCTGAAAGATGTGTTCAACTGCTATCTTAGCAGGAGCTTGATTGTGTGATACAACCAGGGTCATGATTTCACAAGTACAGCACATTTCTTAATAGTGACTTCCAATGTTAAAGCACTAAATCGGATACCCAATACACCATTCCGTCTCCCCAAGTCAATAGAAgtgattttaattgtgttgattaaaacaaatggctGTTAAGAGCATGGGTCACCTCAGAGCCCAGATTATGAAAGGTTGTGTTGAATGTAGGCCACAGAGCCTGGAGCGTCCACAGGTACAAAGCCAACTATTTTGACCCTTTATGTGCAAATCGTAATCATAAGTAACCATGAAATAGCCAGCAGTCTAAATAAAGACCCAATTATCAGAATGCCTTCTGAGTTCTCTGAAATTCAGGTTCAACTATATTTTTAACTATTAGGTTGCTAAATCCTGAGTTTTATAGCTGAGGAGAAAGGAAGTAtttttggggtgtgtgtgtatggcacAGTGCCTGCTGTAGACCCATGTGATTGAGTTTCTTGCAAATCTGATTGGCTGACTAAGCCCAGTACCAATAGATTTCAGATAGCATGAAGATATCAAATTAAAAGATCCTTTACCCACTGTTTTATACcccatgaataaataaagagccCAAGTGTAGGATAGCTTGTGAATATATATCTTACAGCTAATCCGCTTACTTACCCTTTTCTCACCTCTGTCTTTAAAGTgaaaattgtgtatatatatatttgggcaGTAGTTTACAACAACCAAACCCaagtggtttatatatatatatatatatatatat

Function


GO: NA

KEGG:

id description
K12804 PSTPIP1; proline-serine-threonine phosphatase interacting protein 1

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00007783 True 2454 mRNA 0.44 15 29405388 29427475

Neighbor


gene id symbol gene type direction distance location
AMCG00007778 NA coding downstream 19083 29379044 ~ 29386305 (-)
AMCG00007780 NA coding downstream 28309 29376246 ~ 29377079 (-)
AMCG00007779 NA coding downstream 108831 29289069 ~ 29296557 (-)
AMCG00007772 NA coding downstream 148769 29233759 ~ 29256619 (-)
AMCG00007771 frmd5,LOC108435336,LOC107562133 coding downstream 283075 29114380 ~ 29122313 (-)
AMCG00007782 NA coding upstream 1180 29428655 ~ 29437506 (-)
AMCG00007786 LOC102216635,LOC103354952,LOC105930457,LOC105022634,LOC104917923,LOC106945593,LOC103149886 coding upstream 146859 29574334 ~ 29585227 (-)
AMCG00007789 NA coding upstream 189796 29617271 ~ 29640100 (-)
AMCG00007794 NA coding upstream 248442 29675917 ~ 29683071 (-)
AMCG00007791 NA coding upstream 301407 29728882 ~ 29735699 (-)
G26165 NA non-coding downstream 39143 29365624 ~ 29366245 (-)
G26147 NA non-coding downstream 93445 29311618 ~ 29311943 (-)
G26115 NA non-coding downstream 172680 29230943 ~ 29232708 (-)
G26092 NA non-coding downstream 356223 29031410 ~ 29049165 (-)
G25987 NA non-coding downstream 670939 28734112 ~ 28734449 (-)
G26231 NA non-coding upstream 180842 29608317 ~ 29608596 (-)
G26342 NA non-coding upstream 977523 30404998 ~ 30454628 (-)
G26352 anx2a,LOC105029377,LOC108433632 non-coding upstream 1004331 30431806 ~ 30437988 (-)
G26370 NA non-coding upstream 1182743 30610218 ~ 30611693 (-)
G26403 NA non-coding upstream 1372936 30800411 ~ 30875378 (-)
AMCG00007768 NA other downstream 391441 29001049 ~ 29013947 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other downstream 484265 28894693 ~ 28921123 (-)
AMCG00007704 NA other downstream 2034869 27357731 ~ 27370519 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other downstream 3334540 26053764 ~ 26070848 (-)
AMCG00007684 shf,LOC108430988 other downstream 3773796 25630792 ~ 25631592 (-)
AMCG00007817 NA other upstream 1764535 31192010 ~ 31246649 (-)
AMCG00007822 NA other upstream 1911241 31338716 ~ 31342792 (-)
AMCG00007835 LOC107594750 other upstream 2377424 31804899 ~ 31816151 (-)
G26961 LOC101154678 other upstream 5441960 34869435 ~ 34869807 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other upstream 6575718 36003193 ~ 36010995 (-)

Expression



Co-expression Network