AMCG00007784 (scaper,LOC106561156)


Basic Information

Item Value
gene id AMCG00007784
gene name scaper,LOC106561156
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29437666 ~ 29485183 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007784
ATGTCGGGCCTGGATAAGGAAGAGGAACCTGCCTACAGACTCTACTTCTATTCTGTAGatgcTAGTTCACATGTCGCGGCTGGGGCTTCCTTCCAGCGCTCCAACAGCCATGACAAGGTGAGGAAAATTGTGGCCGAGGAGGGCCGCACTGCCCGCAATTTGATCGCCTGGAGCGTACCCCTGGAGAGCAAGGAAGAGGAAGgcaAATCCAAGCCTCCGACTGCCAGCAACCCAAGGCCCCACAGACTCAATTCAGGCCCGCCCAGAAACAAGAAACAGAATGTGGGCCTGGACTGCAAGAGTGCAGCCGGAGCGTCGATTGACAAGAACACCGAGAAGAGCCCCACTAAGGCCAGGCAGCCCCGCAAGGTGGACCTGAGGGCTCGCTACTGGGCCTTCCTCTTCGACAACCTGCGCAGGGCTGTGGACGAGATCTATGTCACGTGCGAATCGGACCAGAGCGTCGTGGAATGCAAGGAGGTGCTGATGATGCTGGATAACTACGTCAGGGATTTCAAAGCCTTAATTGACTGGATTCAGCTCCAAGAAAAGCTGGAGAAAACAGATGCCCAGAACAGGCCCACGTCTCTGGCTTGGGAAGTACGAAAGATGTCTCCAGGGCGCCATGTGATGTCCAGTCCATCCACTGATCGGAACAACCCCTCATCCAGTGCACGAAGGACACTCAATTTTGGAGGTCCTCCTCCTACCCTGGCCACAGCTCGCCTCACTCCTACAGGCACTAGCTGGGCAGACAAGGTGAAGGCCAGTCACTCTTCCAGCCGCAGTGTCCCCGGGATGCCCCTGCCTACCTCACACTCCCTCCCGCCCTGCCCCGCTGAGAAACCCGGGAGGAAGGACGCAGAGGGCTGGGAGACGGTACAGAGAGGCCGGCCTGCGCGACCCCGCTCTGCTGCCATGGTGACCAAAGCCAGCCCCGCCCCTGTGCCCCAGAGCCCCAAAGATGACAGTGACAAAGAGAACATCCAGCACGGACCCTCAACCCAGAACCTGGACCCATCGCCCCCTGAGAGCAAGACCGAGCCCCCGACTCCTGAGGACAAACCTGGTGTCCTCAAAACAGACATCATTCAGttgtcCCTGGAAGATGGGCCTCAGGATTCAGGGCCGTCTGGCAGCGCACCCTCGCAGGAGGAGGGGGACCGGCAGCGGGCTCAGCCTCCCGAGATCCACACAGACGTGCTCTGTCCCTTGCAGGGCCAGGAGGTCAGCCCTACTCTGGCAGCATCTGCTCCAGAACAGACTCCCAGTGCCGCTGTGAAACTGGAGAGCGTGCTGGACCCCATAGAGCTTTCCACTACACAGTCGATGGCGGAGGTACTGGCTAAGAAGGAGGAGCTAGCAGACCGACTGGAGAAAGCCAATGAAGAGGCCATCGCCAGCGCCATCGCCGAGGAGGAGCAGCTGACTCGAGAGATCCAGGCTGAGGAGAACAATGACCTGGAGACGGACAATGAGAGCGACTTCTCTGCCAGCATCGGCAcccGGGAGCCTTGGCGTCAAAGCACATCCTGGGGTGACATCGTGGAAGAGGAACCAGCCCGCCCACCTGGCCATGGCATCCACATGCATGAGAAACTCTCTTCTCCCTCCCGCAAGAGAACCATCGCTGAATCCAAGAAGAAACACGAGGAGAAACAGCTGAAGGCCCAGCAGCTCCGCGAGAAGCTGCGTGAAGAGAAAACCCACAAGCTGCAGAAGCTGTTAGAGAGGGAGAAGGAGGTAAGGAAATGGAAGGAGGAGCTGTTGGAGCAAAGGCGCAAGATGATGGAGGAGAAGCTTCTTCACGCAGAGTTCAAGCGTGAGCTGCAGCTGCAGGCTATAGTGAAAAAGGCACAAGAGGAGGAAGCCAAGGTGAACGAGATTGCATTCATTAACACGCTGGAGGCTCAGAACAAGAGACACGACGTGCTGGCCAAGCTGAATGAATATGAGCAGCGGCTCAGCGAGCTGCAGGAGGAGAGGCAGCGGCGGCAGGAGGAGAAACAGGCCCGTGATGAGGCAGTACAGGAGCGGAAGCGGGCTCTGGAGGCGGAGCGGCAGGCGCGGGTGGAGGAGCTGCTGATGAGGCGCAGGGAGCAGGAGGCGCGCATCGAGCAGCAGAGACAGGAGAAAGAGCGGGCGAGGGAGGATGCTGCGCGAGAGAGGGCCAGAGACCGAGAGGAGAGACTGGCTGCCCTCAGTGCAGCTCAGCAAGAGGCAGTGGAAGAACTGCAGAAGAAAATACAGCTCAAGCACGACGAGAGCAGCCGGCGGCACATGGAGCAGATAGAGCAGCGGAAGGAGAAGGCAGCTGAGCTGAGCAGCGGGCGCCATGCCAACACCGACTACGCCCCCAAACTCACGCCGTATGAGCGCAAGAAGCAGTGCACTCTGTGTAATGTCACGATCACCTCGGAGGTCCACCTGTTCAGCCACATCAAGGGCAAGAAGCATCAGCAGGCAGTCCGAGACAGCAGCAGCATCCAGGGCCGGGAGCTCTCCGATGAAGAAGTGGAGCACCTGTCTCTGAAGAAGTACATTGTGGACATTGTGACAGACAGCTCTGTCGCCACTGAGACGGCAAAAGACGGAGAGGAGAAGCAGAAGGCAAGAAAGAAAGCCAAGAAGCTCCGAGCACGGATGAACTCCAGGTAA

Function

symbol description
scaper Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human SCAPER (S-phase cyclin A associated protein in the ER).

NR:

description
PREDICTED: S phase cyclin A-associated protein in the endoplasmic reticulum-like isoform X2

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24869 SCAPER; S phase cyclin A-associated protein in the endoplasmic reticulum

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007784 True 2658 mRNA 0.59 21 29437666 29485183

Neighbor

gene id symbol gene type direction distance location
AMCG00007785 NA coding upstream 633 29433012 ~ 29437033 (+)
AMCG00007781 tspan3,tspan3a,LOC107690355 coding upstream 35665 29392907 ~ 29402001 (+)
AMCG00007777 kti12,LOC107562123,LOC107715238,LOC107725737 coding upstream 76179 29355051 ~ 29361487 (+)
AMCG00007776 NA coding upstream 85784 29351070 ~ 29351882 (+)
AMCG00007773 sec11a,LOC107691153 coding upstream 95086 29339646 ~ 29342580 (+)
AMCG00007787 etfa,LOC107712526,LOC107557988 coding downstream 101290 29586473 ~ 29608597 (+)
AMCG00007796 NA coding downstream 444565 29929748 ~ 29941831 (+)
AMCG00007797 vps13c coding downstream 459937 29945120 ~ 30043181 (+)
AMCG00007798 rora,LOC103141220,LOC106561150 coding downstream 903010 30388193 ~ 30401103 (+)
AMCG00007799 NA coding downstream 923848 30409031 ~ 30429130 (+)
G26171 NA non-coding upstream 61788 29374376 ~ 29375878 (+)
G26167 NA non-coding upstream 69943 29367373 ~ 29367723 (+)
G26146 NA non-coding upstream 125722 29311623 ~ 29311944 (+)
G26103 frmd5,LOC107691145,LOC107556247,LOC103373640,LOC570903 non-coding upstream 355285 29074456 ~ 29082381 (+)
G25984 NA non-coding upstream 706265 28731130 ~ 28731401 (+)
G26196 LOC107575789 non-coding downstream 54500 29539683 ~ 29540062 (+)
G26243 LOC106587622,LOC106562410 non-coding downstream 241211 29726394 ~ 29729537 (+)
G26249 NA non-coding downstream 253519 29738702 ~ 29741082 (+)
G26262 NA non-coding downstream 314574 29799757 ~ 29803603 (+)
G26319 NA non-coding downstream 917382 30402565 ~ 30406647 (+)
AMCG00007769 acsbg1 other upstream 431287 29003095 ~ 29006379 (+)
AMCG00007763 tbc1d2b other upstream 526100 28900058 ~ 28911566 (+)
AMCG00007754 NA other upstream 737604 28682171 ~ 28700062 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other upstream 982959 28438644 ~ 28454707 (+)
G25822 NA other upstream 1342925 28083822 ~ 28094741 (+)
AMCG00007788 NA other downstream 137128 29622311 ~ 29724734 (+)
G26258 tpm1,tpma,LOC108237348 other downstream 269857 29755040 ~ 29819552 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other downstream 1928971 31414154 ~ 31440378 (+)
AMCG00007854 NA other downstream 4278330 33763513 ~ 33794941 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other downstream 6125799 35610982 ~ 35620801 (+)

Expression


Co-expression Network