AMCG00007787 (etfa,LOC107712526,LOC107557988)


Basic Information

Item Value
gene id AMCG00007787
gene name etfa,LOC107712526,LOC107557988
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29586473 ~ 29608597 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007787
GAACGGAAGCGGAAGCTGCTCCAATCAGCGGCCGAGTTTCGGCTCTCTTACTCTCGCGATAGTACACACGTCCTGTCATTTTGGAGAGTGAGCCGAAGTGTCCTAGCTGCGGCTAAAGGGATCCctggaaaaatgtataaagtgaTTAACAGGACAAATCTGAGACAAGTGGCCAGTCTCTTCCATAGGTGTCAGAGTACCCTAGTAGTGGCCGAGCACAATGATGACAAACTCAGTCCCATCACTCTCAATGCCATCACTGCTGCCAGTAAGCTGGGGGGGGACATCTCCTGCTTGGTAGCTGGTACAAACTGCACCAAGGTTGCTGAAGAACTAAGTAAAGTCCAAGGAGTTAAAAAAGTTCTGGTGGCTCAGAATGATGCCTTCAAAGGGTTATTGCCAGAGGAGCTGACGCCACTCATTCTGGCCACGCAGAACCAGTTCAACTTCACACACATCTGCGCTGGAGCATCTGCTTTTGGCAAAaaccTCCTTCCCAGAGTGGCTGCCAAGCTTGACATTGCCCCCATCTCTGATATTATTGAGATCAAGTCCCCGGATACCTTTGTTAGAACAATCTATGCTGGGAATGCACTCAGTACTGTGAAGTGCAATGAGAAGGTGAAGATCTTCACTGTCAGAGGGACTTCTTTTGAAGCTGCACCTGTATCTGACGGCAGTGCTGCTAATGAACAAGTCTCTCCAGGCCCTGCTGTTGGCATTTCACAGTGGCTTGAGCAGACCCTGAGTAAGAGCGACCGCCCAGAGCTGACCAGTGCCAAGGTGGTGGTGTCTGGAGGAAGGGGGCTGAAGAGTGGTGACAACTTCAAACTGCTCTATGATCTGGCTGACAAGTTGAATGCTGCAGTCGGTGCCTCCAGAGCTGCTGTTGATGCTGGCTTTGTCCCCAACGACATGCAAGTAGGACAGACTGGGAAAATCGTAGCACCTgagCTGTATATAGCAGTTGGCATATCTGGAGCTATTCAGCATCTGGCAGGCATGAAGGACAGCAAGaCAATTGTTGCCATAAATAAGGACCCAGAAGCCCCTATTTTCCAAGTGGCTGACTATGGCTTAGTGGCTGATCTTTTCAAGGCTGTTCCTGAAATGATCGAGCTGCTGCAGAAGAAGTGATTTGGACAATAAACAGCCTCTTGCCGGATAATGCTTCTAACAGTTAATACttagaaatctgtttttaattttcataaatGGCCTTAAGTATGTTTGTTAGAAGATTGGTCCAGCATATTTTGTCTGGCCTTAAATGTTCTATGAGTAatcctgtaattatttttttgtaatctaataaaaactaaattaaattga

Function

symbol description
etfa Predicted to enable electron transfer activity and flavin adenine dinucleotide binding activity. Acts upstream of or within animal organ morphogenesis; mitochondrion morphogenesis; and regulation of fatty acid beta-oxidation. Predicted to be located in mitochondrial matrix. Is expressed in several structures, including alar plate midbrain region; digestive system; musculature system; nervous system; and yolk syncytial layer. Used to study multiple acyl-CoA dehydrogenase deficiency. Human ortholog(s) of this gene implicated in multiple acyl-CoA dehydrogenase deficiency. Orthologous to human ETFA (electron transfer flavoprotein subunit alpha).

NR:

description
PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial

GO:

id name namespace
GO:0009887 animal organ morphogenesis biological_process
GO:0070584 mitochondrion morphogenesis biological_process
GO:0031998 regulation of fatty acid beta-oxidation biological_process
GO:0009055 electron transfer activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG:

id description
K03522 fixB, etfA; electron transfer flavoprotein alpha subunit

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007787 True 1332 mRNA 0.47 12 29586473 29608597

Neighbor

gene id symbol gene type direction distance location
AMCG00007784 scaper,LOC106561156 coding upstream 101290 29437666 ~ 29485183 (+)
AMCG00007785 NA coding upstream 149440 29433012 ~ 29437033 (+)
AMCG00007781 tspan3,tspan3a,LOC107690355 coding upstream 184472 29392907 ~ 29402001 (+)
AMCG00007777 kti12,LOC107562123,LOC107715238,LOC107725737 coding upstream 224986 29355051 ~ 29361487 (+)
AMCG00007776 NA coding upstream 234591 29351070 ~ 29351882 (+)
AMCG00007796 NA coding downstream 321151 29929748 ~ 29941831 (+)
AMCG00007797 vps13c coding downstream 336523 29945120 ~ 30043181 (+)
AMCG00007798 rora,LOC103141220,LOC106561150 coding downstream 779596 30388193 ~ 30401103 (+)
AMCG00007799 NA coding downstream 800434 30409031 ~ 30429130 (+)
AMCG00007800 anx2a,anxa2,LOC108433632 coding downstream 821243 30429840 ~ 30438133 (+)
G26196 LOC107575789 non-coding upstream 46411 29539683 ~ 29540062 (+)
G26171 NA non-coding upstream 210595 29374376 ~ 29375878 (+)
G26167 NA non-coding upstream 218750 29367373 ~ 29367723 (+)
G26146 NA non-coding upstream 274529 29311623 ~ 29311944 (+)
G26103 frmd5,LOC107691145,LOC107556247,LOC103373640,LOC570903 non-coding upstream 504092 29074456 ~ 29082381 (+)
G26243 LOC106587622,LOC106562410 non-coding downstream 117797 29726394 ~ 29729537 (+)
G26249 NA non-coding downstream 130105 29738702 ~ 29741082 (+)
G26262 NA non-coding downstream 191160 29799757 ~ 29803603 (+)
G26319 NA non-coding downstream 793968 30402565 ~ 30406647 (+)
G26360 NA non-coding downstream 901938 30510535 ~ 30522510 (+)
AMCG00007769 acsbg1 other upstream 580094 29003095 ~ 29006379 (+)
AMCG00007763 tbc1d2b other upstream 674907 28900058 ~ 28911566 (+)
AMCG00007754 NA other upstream 886411 28682171 ~ 28700062 (+)
AMCG00007735 LOC104966693,LOC107388733,LOC105916711,LOC106514397,LOC105007422,LOC106561846 other upstream 1131766 28438644 ~ 28454707 (+)
G25822 NA other upstream 1491732 28083822 ~ 28094741 (+)
AMCG00007788 NA other downstream 13714 29622311 ~ 29724734 (+)
G26258 tpm1,tpma,LOC108237348 other downstream 146443 29755040 ~ 29819552 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other downstream 1805557 31414154 ~ 31440378 (+)
AMCG00007854 NA other downstream 4154916 33763513 ~ 33794941 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other downstream 6002385 35610982 ~ 35620801 (+)

Expression


Co-expression Network