AMCG00007792 (tpm1)


Basic Information

Item Value
gene id AMCG00007792
gene name tpm1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29757456 ~ 29765855 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007792
ATGTTTTTCCATGTTGCACGTAAGCTGGTGATCATTGAGGGTGATCTGGAGCGTACTGAGGAGCGTGCCGAGCTGTCAGAAGGCAAATGTGCTGAGCTTGAGGAAGAGTTGAAAACTGTGACCAACAACCTGAAGTCACTGGAGGCACAGGCTGAGAAGTACTCACAGAAGGAAGACAAGTATGAAGAGGAGATCAAGGTCCTCACTGACAAACTGAAGGAGGCTGAGACTCGTGCTGAGTTTGCTGAGAGATCAGTAGCCAAGCTTGAGAAGACCATTGATGACCTGGAAGATGAGTTGTATGCCCAGAAACTGAAGTACAAAGCCATCAGCGAGGAGCTGGACCACGCTCTCAACGACATGACTTCAATGTAAATCTCGATCTATTGTCTGCTTGTGCCTGTACCCTTCCCCCTTCCCCCTGGCCACTAGTCCCTCTTCCCTCCCTCATTCTGGTAACCCTTTCATTAACCCCTACTCTTCCCCTTAGCTCTCCTCCCTACACCCTGTTTATCCTCAAGTCATCTGCATCTTCTGTTTATACAATATGAAATGGACGAGTCTCTTGGGTTGTGGTATTAAAAGGCTCAACTTCCTTAGGTGTCTTAATGATTACAAAATTGTTTCATCGTATCCAATTCTCTGCATTAGTGCTGTGTGGCATATAGCATAATAAAACTAAGTAATACCTCAGATTGGGCCCCATTGTTTACCTACATCCAGTTGCTGCCATGGAGACCATTGTTTCCCTGATGCTAAACCCATAACCGTAATTTTCACACTCCTGCAGAAAAGTATTTCTTAATGAATATCTATCTGTACTGTGAAAAGGCAAGCTGTATTCTGTAACTCAATTGGCTCAAGGATACTGATTCAATTAATCTGACTCCAGGCTTCAGATCCATTCCTTGTATAAACATAATTTAGACATGGACTTCATTTTCGGACTTGTTTTGGAACAGTTTGAAGTGTATTTTCACTAACGCATCGAATtcccattttatatttttacccCTTTAGATAAATTTGACCGTCCCTCACAATGCATGCTTCGAGCTACTGCAGTAGTCCATCAGTGTATGCTGTGTGgacataagaaaataattttcaataaatgtctccctgggtttttgtttttgagtgtgGTGTTTCTCCGGTTTTTCCTCGTGTCACGGTTGTTCAGAATTAGGTTGTGGTGTCTTTCCTACTAACCTATTCCTACTTCAACCCTGAATAGTCCAGAATTCAGGGTGAATGTAGTTCACTATGTGTTCTTGTTGAATGggtcatgttttcctttttgactTGTGTGAACTCTGTACATCAACCAACTCCTAACCAATAGAATAGTGGATCTTGAATTGGTGAATTTAATCCTTTCTTATGAAGTCTGATGAGCACCGTTTTCTGGAAAGTGGCATGATTGTCCATGATCCATAGAGGAGTAAATTGtaatcttaatttttatttatagacTGTGATAGTTTTGTATGTAGAGGAGGAAACAGTGCTCTTCACAATTCATTgaacaatgaatgaatgagtgacTTGCGTTTTTAAAGATTGGTCCAGTACAAATCTGTAGTCTATGATTTGAAAAGAGGTTACAGTATTGGTGGCCTATACGATATATGTAGCTGTCATCCACCTTGGTTCTGTTGCGTgatttgcttgcttgcttgcttttttttttttgcatttggttTTTCCTCTGCTATTCCATCATGCTCTATCTacccttttgttttcaaacagatAAATTGTTTACTCTGCATCGCAACAAAGACGTCTCCTGCCGGCTGAGTAGCCTTCATTCTGCGCTCTCCAGcatttctcaatttcttaaCCCTTCTGTCTTTGCTTTTCCTCATTTTAACACCCAGTGTCAGAACTTGGCCGCCATTGTCATGTATTCCATCTCTTGTACAGAACCTTTGAATTCATTTGCtctatgtaaaataaacttCCTTCCATCTATGTAAGCTATACCTTTCTTTCAATttccttttagttttgtttttgttaattctATGTGCTTAATTTATTGTCGAGTGGCTTTAATAAAGCTAAGCGCCGCTTTCTGACTCTTGAGGgacctttttcttttatttttgtcagccATTTACAATACCAGTATATTGACTTGCATTGCGTGTAGTACAAGTGATCAGCCATCAAGGAAGTCCATTTGAATTTTGTTGCCCCCTGGGCAGCCAGGCGCTGTAGAATTccagtttgtttgcatttgacATTTGGCTCAGTGTGAAACTGAGTGATAACCCAGGAACATGTCAGATTTCATAACCTGTTTCAGGCtgtcagttttttgtttttttttaaatagccttTTAACTGCAACATTTCAGTTACTGAAGAGCAATGTGGTATTgcttataaatatgtaaatgcgGAGTTCCACTGTACTGATCTGCTGATGTCACAGGTCACTATTTCCAGGAGTGACCTGAATTCTGGACACCCTGAatgcaaatttatatttttggtaaTCCGTAAGTAAAAACGATTGATCTTCCTTATTCTCTACTACAGATTAAATGAACCACTAGAGCAGGGATGACCAACCCTGGTCCTGTGGGGCCACAgtgcattattttgttttattcagattaaTTGCTTCATCTGGCCATATTTGGTCTTAATGACTTGGTCAACATTTTCATGCGTATCCAATGATTTTATGATTGAGAGATCTattaaacctgcaggattgcagcTCTCCGGGAACATGGTTGGCCTCTCCAACACTAGAGTGCAGAACTTTCCCAAAATGCTCAATGTAATTGAAAGAAAAGTAGGATTTGTGTTCAAAATGTTCATTGCAAAGCTTCTAGAGATTAAGGTCTATGACATCAGCAGAGTAGTCTCAGGTGAAACTGTGGAGGGTAGCAGTTATGACTGATGTATttgcacatttataaataatgcaaatttgCATCCCAGAATCCAAAAAAATGCAATGATCTTGATACAAACTGGgaaactgtttttaatattaatttgatcaTATTGTGTGTCATGACCAAACGTTTAGTTCTAAAATGCGCATAGATTTTTAATATCATGTGAGTCAAAGATGACTGATGGCTTTCAGTGTTGCTCAGCAGATAATGCAGCATTGTCTACAATTATAGGCTTGCATCAAGGCTTTCCCatcaatattttataaagttttatttatttaaatgtgaatggAGTTCATTGGAATAAGAGCAATCTGACAATGTATTGGCTACCAGTTCTGGATAACTTCCTCCTCCCCCAAGTAATGGCAGCCATGGTAACTACAACTCAATGTGTCCTGCTGCTTATCAGCACTGTTACGAAacaaattgtaaacaaattaagatgAAACTTAAAAAGTTACATTATCCACAAGATCACTTCATGTCAGGAAGGGGTTGACCATTGTATTCTatataaaatgtagtttgtACATGCAGACAAACCTTTAATTAGACAgccaattcatatttaaataccaAACGTTGCATCCGTGATTAGTCCTTTCATGATTTGGTCAAACTCAAATGGGTTTTGGATTATAAATCGGAGCACTTCAGTCACCAGTCTGCAACCTTTTGGCCTGTACAGGTTGACTGATCAATTCACATTAGGTGTGAAAGTGTATTTGCATATAAGCGGCTCAAATCTCTGGCAAGCATTGGAATCGCATGATTGTAGTATGATCAAATGTAGTACAAAGCATTTTCAATCTGTTCTTGAATCCTACTTTAGGATTATATACCGTTACCTGCTGTATTGTAGGTACTTTCTTGCATACATTGTAACTCCAGAAAAAGGAAGGTTTTCTACTTTCATCTGggtatttcatttaattcatgGCCTTCTAATATTTATAGTTGATTGACAATTGCAGGGTATAATGTCTTGCATTTCGTAATACTTAAGACAggacattcaatttaaaatgtacattttttcccTTAACTTGATATTCATATCCTTCTGTAAGTGACTATAGTCATATTGAATTATCTTCCCCTCAGTATATTATAGCAGATAAGTACAGTGGTGCAGTTGTAAACCCCAGAGAAGTCTATTGCTTAATTTAAACTGGCTCTTACTGTCCGAATGAGATGGTTAACAGTTATACTATCTTGAGGTTTCACTTGCTATGTGTTTTTAACGTTGTACAGATAGTCTTGTAATACTTTCATACTTCATTCAGaatgcaggttttgtttttttggctgtGCCAATATGTCGGCTAAAACCATTAACTATAGTACAGTTGTTCATTCATCTAAGCACAGTACTACAATTCAGATTAAAGCAGTCAGCAGGCTAAAATGACTAATCACCTTTTGGCATACCATGGTGTGTGTAGTGACTACTTCtgaagtacatttgtttttcttccttaagTTTAGATGTGTCCAATACCAAAAGTATATACTCCCAGGAAGCTAAAGTACAGCTCAACCACTAACTAAAAGTGTGTAATACCAAGGCAACTATTgatatttcatatacatttaaaaagcactaCATTATCCAGAAGCATACCTAATAATCCATACTACTCGAAACAAAAAGGTGCTGAATAAAAAttgattcagtattttattgaaCAGCCCTGCAACTTTTGCAACTTCTGTTAAAGTACAGATGTTATACTTTACATAACCTGTTGCTGCAAGACATTATGGTTaaagggagatttttttttataggccTTACCATAACTCAGTTTTCTGACTCCAGGTTGCAAAAATAGCACTAGTCATTAGTAGACTGTTCCTTAGCTTGTAGAATAAACATACTGGCACTTTTCAAATGCAGTAAAACCAATTGTGAAGAGATGagttaaaataaattttgaaatagttttctATTTTGGGGAAGGGTGAGCTAAGGGGAAATGGCATTATAAACGGGGAAGTGGTACAATGAGATGTATTGTAGTCAGATTGAGAATTTAACTAAAGATGcagtattttcttaatatttttgaGGTTTCTTTAGAGTACTGCAGTCTGCTTCAACAGGACTAATCTATACTATGTTGGCTTTCATCATTATCATTGTtctaataaaaagcaaaaagtgCTAAATTGGGAAAAACGCATAATGTATATACCACAACGTGCGTGTGTTATTATGTAGGCAATACCAGAACCAGTTTTCGTATTGGAATATTCCTCATGACTTGGCATTACATCATGATCTCAACTCTCAACTATAATGGTTGAATGCAGATATCTGCTAGCTCTGAATATTTCACAAGCTTCAATCTGAAAAAGGATTCCTGGGTAATTAGCGACTGCCACTCCCTGGTCCAACTGTTAATCCGATTACTTTCTCAGGGTGATCAGTTCAAGTAAGGAGAAAAAAACGTTTAATAACCTAAACGGTTGCACACAAGGAATGGCACATCTGCTGCCAAAGCAAATTAGTGACATCATCTTGGGAGAGTCCAGTTTGGTTCCACAATTCCCTCTTTACAAATTGCCTATGAAACTCGGAACTGCAAAGGTCAGACTTGTTTAACCAATCACACTTGAGTGGACTGCTTCCCCTACTGTATGTGAAAAAGGTACAGTATAAACTGATGTGCGTTTTCTGAGTGAAATCCTAACCGCATTGGCATTTTTTTGTTCCCTTCTTTTTCTATGCttaacactgcactgttttctctttctctctctctctctccgttttcCTTAACCTGCTTTCCGACTGTCCAGATCGCCTCTACCAACAACTTGAGAAAAACCGCCTTCTTACTAATGAACTAAGGCTGGCCTTAAATGAGGATTGAAtgtagtctgttttttttttttttt

Function

symbol description
tpm1 Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization and muscle contraction. Predicted to be active in actin filament. Is expressed in adaxial cell; heart; and musculature system. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 1Y; familial hypertrophic cardiomyopathy; and hypertrophic cardiomyopathy 3. Orthologous to human TPM1 (tropomyosin 1).

NR:

description
PREDICTED: tropomyosin alpha-1 chain isoform X9

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007792 True 5828 mRNA 0.38 6 29757456 29765855

Neighbor

gene id symbol gene type direction distance location
AMCG00007790 NA coding downstream 6877 29738738 ~ 29750579 (-)
AMCG00007791 NA coding downstream 21757 29728882 ~ 29735699 (-)
AMCG00007794 NA coding downstream 74385 29675917 ~ 29683071 (-)
AMCG00007789 NA coding downstream 117356 29617271 ~ 29640100 (-)
AMCG00007786 LOC102216635,LOC103354952,LOC105930457,LOC105022634,LOC104917923,LOC106945593,LOC103149886 coding downstream 172229 29574334 ~ 29585227 (-)
AMCG00007793 tpm1 coding upstream 83 29765938 ~ 29774953 (-)
AMCG00007795 LOC103354956,LOC102781786,LOC102208509 coding upstream 33891 29799746 ~ 29864611 (-)
AMCG00007801 foxb1,LOC103353681 coding upstream 743027 30508882 ~ 30509502 (-)
AMCG00007804 NA coding upstream 848134 30613989 ~ 30614885 (-)
AMCG00007803 NA coding upstream 853563 30619418 ~ 30639376 (-)
G26231 NA non-coding downstream 148860 29608317 ~ 29608596 (-)
G26165 NA non-coding downstream 391211 29365624 ~ 29366245 (-)
G26147 NA non-coding downstream 445513 29311618 ~ 29311943 (-)
G26115 NA non-coding downstream 524748 29230943 ~ 29232708 (-)
G26092 NA non-coding downstream 708291 29031410 ~ 29049165 (-)
G26342 NA non-coding upstream 639143 30404998 ~ 30454628 (-)
G26352 anx2a,LOC105029377,LOC108433632 non-coding upstream 665951 30431806 ~ 30437988 (-)
G26370 NA non-coding upstream 844363 30610218 ~ 30611693 (-)
G26403 NA non-coding upstream 1034556 30800411 ~ 30875378 (-)
G26416 NA non-coding upstream 1137814 30903669 ~ 30903895 (-)
AMCG00007768 NA other downstream 743509 29001049 ~ 29013947 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other downstream 836333 28894693 ~ 28921123 (-)
AMCG00007704 NA other downstream 2386937 27357731 ~ 27370519 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other downstream 3686608 26053764 ~ 26070848 (-)
AMCG00007684 shf,LOC108430988 other downstream 4125864 25630792 ~ 25631592 (-)
AMCG00007817 NA other upstream 1426155 31192010 ~ 31246649 (-)
AMCG00007822 NA other upstream 1572861 31338716 ~ 31342792 (-)
AMCG00007835 LOC107594750 other upstream 2039044 31804899 ~ 31816151 (-)
G26961 LOC101154678 other upstream 5103580 34869435 ~ 34869807 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other upstream 6237338 36003193 ~ 36010995 (-)

Expression


Co-expression Network