AMCG00007793 (tpm1)


Basic Information

Item Value
gene id AMCG00007793
gene name tpm1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 29765938 ~ 29774953 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007793
CTCCAGCTTGGCGTTCGGTTCGGCACGGTCGCTCTAAGCCATCTCTCCTTCAGTTCAGTTTCTTTTGGAGCATTTTGTTCGGCCACACACAATAAACAGCCATGGATGCCATCAAGAAGAAGATGCAGATGCTCAAGCTCGACAAGGAAAACGCCTTGGACAGAGCTGAGCAAGCTGAAGCAGACAAGAAGGCAGCCGAGGACAGGAGCAAACagttaGAGGATGAAATAAGTCAATTGGAAAAGAAATTGCGAATTACCGAAGACGATAGAGATAAACTGCATGAGGAGTTCCAAGTGGCTGAAGAGAAACTGCTGAGCGCTGAAGAAGTCGCCACAAAGCTCGAGGATGAGCTGGTAGCTCTGCAGAAGAAACTCAAGTCCACCGAGGATGAGTTGGACAAGTACTCCGAGGCCCTTAAAGATGCCCAGGAGAAACTGGAATTGGCCGAGAAGAAAGCTACCGATGCTGAGGGTGATGTAGCTTCCCTGAACAGACGTATCCAGCTGGTTGAGGAGGAGTTGGATCGTGCACAGGAGCGTCTGGCAACAGCGCTGCAgaagctggaggaggccgagaAGGCTGCTGATGAGAGCGAGAGAGGCATGAAGGTCATTGAGAACAGGGCCCTGAAGGATGAGGAGAAGATGGAGCTGCAGGAGATCCAGCTGAAGGAAGCCAAGCACATTGCTGAGGAGGCTGACCGCAAATATGAAGAGGCAAGTTTGAGGGAGAAAGGATAA

Function

symbol description
tpm1 Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization and muscle contraction. Predicted to be active in actin filament. Is expressed in adaxial cell; heart; and musculature system. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 1Y; familial hypertrophic cardiomyopathy; and hypertrophic cardiomyopathy 3. Orthologous to human TPM1 (tropomyosin 1).

NR:

description
PREDICTED: tropomyosin alpha-1 chain isoform X8

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007793 True 743 mRNA 0.51 5 29765938 29774953

Neighbor

gene id symbol gene type direction distance location
AMCG00007792 tpm1 coding downstream 83 29757456 ~ 29765855 (-)
AMCG00007790 NA coding downstream 15359 29738738 ~ 29750579 (-)
AMCG00007791 NA coding downstream 30239 29728882 ~ 29735699 (-)
AMCG00007794 NA coding downstream 82867 29675917 ~ 29683071 (-)
AMCG00007789 NA coding downstream 125838 29617271 ~ 29640100 (-)
AMCG00007795 LOC103354956,LOC102781786,LOC102208509 coding upstream 24793 29799746 ~ 29864611 (-)
AMCG00007801 foxb1,LOC103353681 coding upstream 733929 30508882 ~ 30509502 (-)
AMCG00007804 NA coding upstream 839036 30613989 ~ 30614885 (-)
AMCG00007803 NA coding upstream 844465 30619418 ~ 30639376 (-)
AMCG00007807 NA coding upstream 1035841 30810794 ~ 30830616 (-)
G26231 NA non-coding downstream 157342 29608317 ~ 29608596 (-)
G26165 NA non-coding downstream 399693 29365624 ~ 29366245 (-)
G26147 NA non-coding downstream 453995 29311618 ~ 29311943 (-)
G26115 NA non-coding downstream 533230 29230943 ~ 29232708 (-)
G26092 NA non-coding downstream 716773 29031410 ~ 29049165 (-)
G26342 NA non-coding upstream 630045 30404998 ~ 30454628 (-)
G26352 anx2a,LOC105029377,LOC108433632 non-coding upstream 656853 30431806 ~ 30437988 (-)
G26370 NA non-coding upstream 835265 30610218 ~ 30611693 (-)
G26403 NA non-coding upstream 1025458 30800411 ~ 30875378 (-)
G26416 NA non-coding upstream 1128716 30903669 ~ 30903895 (-)
AMCG00007768 NA other downstream 751991 29001049 ~ 29013947 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other downstream 844815 28894693 ~ 28921123 (-)
AMCG00007704 NA other downstream 2395419 27357731 ~ 27370519 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other downstream 3695090 26053764 ~ 26070848 (-)
AMCG00007684 shf,LOC108430988 other downstream 4134346 25630792 ~ 25631592 (-)
AMCG00007817 NA other upstream 1417057 31192010 ~ 31246649 (-)
AMCG00007822 NA other upstream 1563763 31338716 ~ 31342792 (-)
AMCG00007835 LOC107594750 other upstream 2029946 31804899 ~ 31816151 (-)
G26961 LOC101154678 other upstream 5094482 34869435 ~ 34869807 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other upstream 6228240 36003193 ~ 36010995 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G124815 NA non-coding NC_047602.1 CM018548.1 756854 ~ 757420 (-)