AMCG00007801 (foxb1,LOC103353681)


Basic Information

Item Value
gene id AMCG00007801
gene name foxb1,LOC103353681
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 30508882 ~ 30509502 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007801
ATGATGACATCAGACCATTTGGCACCAAGCAAGCCATCCGACGCTGCCCACTACCTCCAACAGCAGGCGAAGCTCCGACTGAGCGCGTTGGCCGCTACAGGCACACACCTGCCCCAGATGTCCACCTACAACCTAGGAGTGTCACAGCCATCCACTTTCAAGCACCCCTTTGCCATAGAGAACATAATCGCCAGAGAATACAAGATGCCAGGAGGACTCGCTTTTTCCACCATGCAGTCCATGTCTGCTGGCTACCCTCTGCACAACCAATTGACCACAGTTGGCACCGCCTGGCCCCATATGTACAGCACCAGCGTGATAGACACCGCAGCCCCAATATCAATGGCCAGCAGTGATTACAGTGCCTATGGCGTGCCTATCAAGCCTCTTTGCCACGGAGGACAGACTTTACCAGCAATCCCGGTGCCAATCAAACCCACCCCAGCCTCGGTGCCAGGTCTGTCGGGTTTGCCTGGACCCATTCCGGCCATCCTGTCGAACTCTCCGCCGTCTCTGAGTCCCACGTCCCCCCAGACAGCGACCAGCCAAAGCAGCCCCGCCACCCCGAGTGAGACTTTAACAAACCCCGCTTCTGCACTGCAGTCGGTGGCAGTGCACTGA

Function

symbol description
foxb1 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in several processes, including mammary gland development; nervous system development; and visual learning. Predicted to act upstream of or within spinal cord development; thalamus development; and urogenital system development. Predicted to be located in nucleus. Predicted to be part of chromatin.

NR:

description
PREDICTED: forkhead box protein B1

GO:

id name namespace
GO:0061374 mammillothalamic axonal tract development biological_process
GO:0061379 inferior colliculus development biological_process
GO:0061381 cell migration in diencephalon biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001756 somitogenesis biological_process
GO:0021855 hypothalamus cell migration biological_process
GO:0008542 visual learning biological_process
GO:0033504 floor plate development biological_process
GO:0007412 axon target recognition biological_process
GO:0043524 negative regulation of neuron apoptotic process biological_process
GO:0022029 telencephalon cell migration biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09395 FOXB; forkhead box protein B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007801 True 621 mRNA 0.58 1 30508882 30509502

Neighbor

gene id symbol gene type direction distance location
AMCG00007795 LOC103354956,LOC102781786,LOC102208509 coding downstream 644271 29799746 ~ 29864611 (-)
AMCG00007793 tpm1 coding downstream 733929 29765938 ~ 29774953 (-)
AMCG00007792 tpm1 coding downstream 743027 29757456 ~ 29765855 (-)
AMCG00007790 NA coding downstream 758303 29738738 ~ 29750579 (-)
AMCG00007791 NA coding downstream 773183 29728882 ~ 29735699 (-)
AMCG00007804 NA coding upstream 104487 30613989 ~ 30614885 (-)
AMCG00007803 NA coding upstream 109916 30619418 ~ 30639376 (-)
AMCG00007807 NA coding upstream 301292 30810794 ~ 30830616 (-)
AMCG00007810 rab8b,LOC106609700,LOC107585968,LOC108441837 coding upstream 406858 30916360 ~ 30924500 (-)
AMCG00007811 dnaja4,LOC108229883,LOC107099226 coding upstream 435110 30944612 ~ 30947926 (-)
G26342 NA non-coding downstream 54254 30404998 ~ 30454628 (-)
G26352 anx2a,LOC105029377,LOC108433632 non-coding downstream 70894 30431806 ~ 30437988 (-)
G26231 NA non-coding downstream 900286 29608317 ~ 29608596 (-)
G26165 NA non-coding downstream 1142637 29365624 ~ 29366245 (-)
G26147 NA non-coding downstream 1196939 29311618 ~ 29311943 (-)
G26370 NA non-coding upstream 100716 30610218 ~ 30611693 (-)
G26403 NA non-coding upstream 290909 30800411 ~ 30875378 (-)
G26416 NA non-coding upstream 394167 30903669 ~ 30903895 (-)
G26598 NA non-coding upstream 1176269 31685771 ~ 31686432 (-)
G26626 NA non-coding upstream 1272136 31781638 ~ 31781891 (-)
AMCG00007768 NA other downstream 1494935 29001049 ~ 29013947 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other downstream 1587759 28894693 ~ 28921123 (-)
AMCG00007704 NA other downstream 3138363 27357731 ~ 27370519 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other downstream 4438034 26053764 ~ 26070848 (-)
AMCG00007684 shf,LOC108430988 other downstream 4877290 25630792 ~ 25631592 (-)
AMCG00007817 NA other upstream 682508 31192010 ~ 31246649 (-)
AMCG00007822 NA other upstream 829214 31338716 ~ 31342792 (-)
AMCG00007835 LOC107594750 other upstream 1295397 31804899 ~ 31816151 (-)
G26961 LOC101154678 other upstream 4359933 34869435 ~ 34869807 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other upstream 5493691 36003193 ~ 36010995 (-)

Expression


Co-expression Network