AMCG00007805 (otud7a,LOC107715690,LOC107659507,LOC107550219,LOC107752330,LOC107698115,LOC107598848,LOC108275340)


Basic Information

Item Value
gene id AMCG00007805
gene name otud7a,LOC107715690,LOC107659507,LOC107550219,LOC107752330,LOC107698115,LOC107598848,LOC108275340
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 30731611 ~ 30774461 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007805
ATGGCACGTAAAAACTGGGACCTGAGCGCTGCCCTGAATGACTATGAGCAGCTCCGGCAGGTCCACACTGCCAACCTGCCACAGGTCTTCAATGAGGGCCGCTACTACAAGCAGCAGGAGCGAGACACCCCCCAGCACCTGAGCAAGATCGAGCGGCCATGTCTGCAGAGGCAGGATGACATTGCTCAAGAGAAGCGCCTCTCTCGGGGAATCTCCCACGCCAGCTCTGCCATCGTGTCCCTGGCCCGCTCCCACGTCGCCAGTGAGTGCAACAGCGAACAGTTCCCCCTTGAGATGCCCATCTACACATTCCAGCTGCCTGACCTCAGTGTCTACAGTGAAGACTTCAGGAGCTTCATTGAGCGGGACCTCATTGAGCAATCCACCATGGTCGCGTTAGAGCAAGCAGgtCGTCTGAACTGGTGGTCCACAATGTGTACCAGTTGCAAGCGGCTTCTTCCACTGGCCACAACAGGGGATGGAAACTGCCTCTTACACGCTGCTTCATTGGGGATGTGGGGCTTCCACGACAGGGACTTGGTGTTGAGAAAGTCCCTCTACGCCATGATGAAGAGCGGAGCGGAGAGAGAAGCGCTGAAGAGGCGGTGGCGATGGCAACAGACGCAGCAAAACAAGGAGTCAGGGCTGGTGTACACGGAGGAGGAGTGGGAGCGGGAGTGGAATGAACTGTTAAAGCTGGCCTCCAGTGAGCCTCGCACACACTTCAGCAAGAACGGCAACACCAGTGGCGGCGTGGACAACGCAGAGGACCCTGTGTATGAGAGTCTGGAGGAGTTCCATGTGTTTGTCTTGGCCCATGTCCTGAGGCGCCCCATCGTGGTGGTGGCAGACACAATGCTGAGAGACTCTGCTTTTGCACCTATTCCTTTTGGAGGTATATACTTACCTCTGGAGGTCCCTCCAAACCGCTGTCATTGCTCACCACTGGTCCTGGCTTATGACCAGGCCCACTTTTCCGCACTAGTGTCTATGGAGCAGAAGGACCAGCAACGAGAGCAAGCGGTTATTCCACTGACTGACTCCGAACACAAGCTGCTGCCTCTGCACTTCGCAGTGGACCCAGGGAAGGACTGGGAGTGGGGGAAGGATGACAATGATAATGCTAAGCTGGCCAATCTTATCCTGTCTTTGGAAGCAAAACTGAACCTCCTGCACAACTATATGAATGTAACATGGATTCGAATTCCATCGGAAACAAGGGCTCCACTGGCTCAGCCAGAGTCTCCCACAGCCTCCGCTGGAGAGGATGTGCAGTCGCTGGCTGACTCCATGGACTCAGACCGAGAGTCTGTCTGCAGCAACTCCAACGTCAACAATGGCAAACCCAgtaaggagaaggagaaggacaaGCAGCGCAAGGACAAAGAAAAGAACCGAACGGACTCTGTTGCCAATAAGCTTGGAAGCCTTAGCAAAACCCTGGGGATCAAGCTGAAGAAGAACATGGGGGGACTGGGCGGGTTGGTCCACGGGAAGATCAGCAAATCCAACTCTAGCAATGCCAGGAATGGGGAGAATGGAGAAAAAACCAAGAAGAAGGATTCAAAATCCCGTAAAGGAAGCAAAGAAGAGTCTGGGCAATCTGCCAGCACGTCCTCCTCAGAAAAGACCACCAGCCCTTCTCCCACGGACAGGGCTTCTGGAGCATCCCCTGTGGAAAAAAGGAACAGCTCTGTGAAGCCCACTGGCGACAAGGTGTCCGACCACTGGAAGTACAGCACTGATGTCAAGCTGAGCCTCAACATCCTCAGAGCCGCCATGCAAGGGGAACGAAAGTTCATTTTCGCAGGCCTCCTCCTGACCAGCCATCGACACCAGTTCCACGAAGAGATGATCAGCTTCTACTTGACCAATGCCCAGGAGCGCTTCAGCGCAGAACAAGAGCAGAAGAGGAAGGAATCGGAGAAGAAGCCCACTGTCAATGGGTCAGCTGCTAAGAAGCCAGAGCAGGAAACCACCTTCCAGAAAGAGAAGACAGACAACTCTCCACGAGAGGGATGCTCTCCAGTGTTGCACCAAAGCCATACCTCCCAGCTGGTTTTGAAGCTGCAGGAGAGGCACAGCCCTAGCCCACCCCCTTTCTCCTCCCCCAGCAATGGTGCTAAAAAATCTGGGCCTATCCCTGTGTCCGCCCACTATAGCCATACGCCACCCATCCAGAGGCAAAGTGTCATTCATCTACGAGACGTCAACTTACAGACATCTGGCTTCCAGGAAGAAACCTATAAGCCCATTGTGGGCACCCTAAAGACCTGCGCTACATACCCGCAGCAGAACCGCTCATTGTCCTCACAGAGCTACAGCCCTGCTCGCATGTCAGGAATCCGCACAGTGAACACAGTGGAGTCCCTCTCCTACACCATGCCTGGGGAACACAAGTCCCACACTTATACCAATGGCTTCAATGCCAACGATGTCCGCGATTGCTTGGAATTCGCAGACGAGGATTCTCCCCAGGCCTGGTTAAACCATGACAAAACCAAAGGCCGCAGCACAGTGTGCCCACTCTACTCACTCCAACAAAACCGGTGCAAGAAAGAGAACTGTTCCTTCTATGGCCGGCCAGAAACTGAGAACTTTTGTTCATACTGCTACAAAGAGGAGCTGAAACGCAGGGAAAGGGAAGGCAAGACACACAGACCTGGATAGCCCATAAAATGCACCAGTGGGTGTAACCAGCTGGTTAAATCAAAGACAGCAGAAGTCCTCTGAggatgacaaaacaaaatatcaccCTGCGTTCTACGAATAATAACAGATAACAGCATACAGTAGACCGTAGCAAATTTCATACTCTATTTATGAacagttttccttttattcttgTTACCTTTCTCTCAATATCAAAGGACACACTTACTTGATAATAAAGAAGGTGGATCTGAAATTACTTTACAGCTTTGGCCGGGGATTTTCCGAATAATGttttagctttatttttattttatttttttattaattttttcaaTTAGTTTGCAGACAGAATACAAATTTAATGAGCatcttaaaaacacagtttttcCCTTATCAAATGGTGCCAAATCATTAGGCAAACTCTTCAATAGCAAAATCATTGTACACCACTTAAATGATAATACAATATAGAGTGGAGCTTTTAGGGGGTGTTATGAATAACAATCAAATTCAACATAGATGTCTTCTAAAAGCTGGCATAGAATATCACTTTGTATTATGTCTTGATAGGAGTTACACCTAGGAAGGAAAATGCACGCCAAGGAAGAATTACAGacatattaaaagcaataaGTTTTCCAAATGTacgtaaactttcttatgtcttTCTTATGTCTGTTCATTTATGTCATAGTTTGTCCTCTGTTTTCTGTAGCATTAATGTTTAAAGGAGCAGAACTGTGATTCTGCAGTCTCTGGCTtcctgttctttaaaaatatattttttgcatctCTACAAAATGTCCGGCACcttaaagcaaaaacattttaaaaataccgGCATTTAAGATGTAATGCAAAGCTTTAAAGCTACTTATGTAAACTGTACATCTTAAGTCAGCTATAAATGTAGGTAAAAAAGTGCtggttttgcatttttagactcaagttttaatttttttgcccccccccaaccctcACCACCATACTCCTGGTAGTTATATTACATGGTAACTGCTTACATGCAAAAATTCCAACTTAATATCCATGtgccaaaaacaataaaattgaatttttaaatacaggtCTGCAGTTGTTCTCAGGTACATAGCAGTGAAATGGGatgctttcaattttttttttataaattcatTTGAGAAGCACTTTGTGCACCAATATACAAGAAACAGGAGGCAAtaaggtgtgtatatatataaccaaaacaaaaataaagtgaaactttaataaaaataaataaataaataaataaaatcggATAGGAAAGTAAAATTAACTCCTCATATTCAATTAGTCTAAATGAGGGTGTGCAATGGCTGTAAGATTGATTCAATGTAAGACAATTAGCAGTCCCTGTCATTGTTTGTCAGGGCTCAAACCTAAACTAACACTAAATAGTTGTCATCTTTCACAAGCTGAAGATATTAAATTATCAGTAAAACTTTATTTCacactttctttccttttgttttcttttaaacgGGATTCCAGAAAATTATTAATGGAAACATTATACTGATTTTTTTATACTGTTATGTTTTGGTtaagctaaaatatatttaccatgGAGAACCCAGTGTAATGTATATGCAACAAGCATTAAACAGGCTTGACAAAAATGTAGTATCCCAATTTAGCAGGTTTCGGTGGTGTATATGTCCCACTGGGTTCCCAAGGCTTCTTTAGTCACAATAATAtcctgatttgttttaaatctggaTCTGTatttagaattgtttttttttattaataaaaaaacaaacaaaaaaagtcataaaCCGTTTCACTTTAGACAAGCTGTCCTTTCTGTTGTATGCACTTGAAAACTGCACTGTACTTAACTGAATGTCCCTTGGCCAAAACTGTGACATATCTTTCAGTTCACTTTCCGATTTTTACTCAACAAACCTGcaattttccttctttctttgtATGTAACAGTTTCATGGACTTTTACCATTAGaagtgtaaaatattattttatattaatttgagaGTTTTACActactttaaattattaatttgcacATTAGATACCAATGTAAATAGtggaaaaaaatagtttattgttaaaaaaacaaaccgaaaaaagaggtgtttgtgttttgtttgtggactAGAGAATGTGATTACATTGGGAATTTCCAAGCCAAGGTTAAATTGTAATatagaaattatttttatattattttcacaaaatgccGCGAAGCAATATTTTGCGCTTTTTCTTATGGACACAGTTGTCACTTTGGTAGGTTATTTTAACTGCAGAGCTGTTAGAGAACAATAACCTTGACAAAAAAAAGGAGATTtgtaaagaaatgttttaagttaTGAATATTTATGTTCCTGGTAGATTCAAACAAGTGTAACAAATCCTACTAATCGAGCTATATCATggggtaaaaaaagaaaagctttatttttcattttgtttttctctatgcatttactttgtatttaatGCAATTGTGCTAAAACCATGTGTTCTCATTGCACCAACATACAGCCTTTTCTTTTACACACTGGGGTGGAAATgcagttctttatttttattttaaattactacatacaaaaactaaaaactggaATAGTAATATGTCAGATTACTTACTTTTGCATTActtacacactttaaaataaggttgtGTGATTCCTGAATCCTGAGGAATACCAtaggattaacacatgaatatctcatgcacttcatctgagttctgatgttaattacatgtgtaacagggttagggttcatgtcCTCAACCTCAGATGATGTGTgtgaggtattgatgttttaatcctgtggtattcatatattaattaggaggaatcacaccaccgtATTTTAAAATGGGACCCAGTTTTCAGATGTGCTCTCAATCTGACAACTGTGTATCTCATACGTTTTAAGGAGAAGTACCTCTGAATTATTCTGTGAGGCgtctgtgtttaaaaatacaaacaagaaaacacagttGACCTTTGTTAGACAAAGAGCTTCAGACCTTCAATGTGCAATAAAATGCACTAGCATTAAAGTAGCTGCTGTACAATAAACACCTCATTAATTGTTACGCAAAACAACGATATTCTTTAGTTTCACAAGGGGGATtgtatgaaataaatcaaatgcgAAGAAATTATGATTGTCTTAGGATAAGAAGCAAATTTTGCAGCACATTTACTGAAAGTGAAGCTTCTAAAAGGACCATGAGATCAGCAAGACAGCATTTACTCTATAGACCTATCAGTGTGTTTGAGAAGAATGATCATTTTACCACTGTCAAGAAGCGTGGAAAAACACTTAATAATATTCAACTCACTTTCTTTCCCCAGAGATGTATGGTTTCAAGCCCATTAAAAAGGTGGGATTGTAAGTGTGagccttttttattaatttaccttTTTCTTGCTGTATGTTGACATGTTTAATATTCCAGTTTAAATCAGAGCTGTTTAAAGAATAAGCCAGTTTCTTATTGTACCTAAATAACTTTCATTGCCTACACCACACAGGCAAATACAGAAGCATGATATCAAGCTTAcgtacccccaccccccccattaAATACTACCAATTATTCTATAGCCAATAAAAGACCTGATGCAGATCATTATTGCAAACTCAGCCTAGTTGCCTGCCAGTGCATAGCATCACCAGTCACTCTATGCTATAAAGAAATTAACATGAAtccaaaaaacaatacatacaatagatagatagatattattATACTATCATATTTGTcatgaaacaaagcaaacccATCTTAGAGGGTACAATGCCAATAAGACTGCTGTTAAGCCTGTGCATTGTGCTCtgatatttgtataattaaagaTTTGACATCCAGTTCAACTGAGTCTATTTAATCAGTCTAAAATGGCATATAATAGACAGTGTACTGAGTTTTAGagtgtgtgccagtgtcagtttaagaaaaataataaaacacattttattggctgttttttattcttttgagGACATACGTCTTTAGATTTCTGTTTGAAGACGTAAGctgtattaaaagcatttttacatGGATCTATTATACGGACCTTCAAAAGCTAAATGAAAGCATTCTCAATAGCCACACCATGTCAAGTGTTTGACTtacatatttctgaaataactacc

Function

symbol description
otud7a Predicted to enable DNA binding activity; thiol-dependent deubiquitinase; and zinc ion binding activity. Predicted to act upstream of or within proteolysis. Predicted to be located in cytoplasm and nucleus.

NR:

description
PREDICTED: OTU domain-containing protein 7A-like

GO: NA

KEGG:

id description
K11860 OTUD7A_B; OTU domain-containing protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007805 True 6814 mRNA 0.41 11 30731611 30774461

Neighbor

gene id symbol gene type direction distance location
AMCG00007806 gtf2a2 coding upstream 118419 30610218 ~ 30613192 (+)
AMCG00007802 bnip2,LOC107703138 coding upstream 123588 30590214 ~ 30608023 (+)
AMCG00007800 anx2a,anxa2,LOC108433632 coding upstream 293478 30429840 ~ 30438133 (+)
AMCG00007799 NA coding upstream 302481 30409031 ~ 30429130 (+)
AMCG00007798 rora,LOC103141220,LOC106561150 coding upstream 330508 30388193 ~ 30401103 (+)
AMCG00007809 LOC107674425 coding downstream 108455 30882916 ~ 30915465 (+)
AMCG00007808 rps27,LOC104929087,LOC106605899,LOC108429942,LOC107084035,LOC100696027 coding downstream 166738 30941199 ~ 30943727 (+)
AMCG00007816 NA coding downstream 322277 31096738 ~ 31098357 (+)
AMCG00007813 idh2,LOC107714782,LOC107691122,LOC107715227 coding downstream 337184 31111645 ~ 31136247 (+)
AMCG00007818 LOC106573467,LOC106561177 coding downstream 496214 31270675 ~ 31302984 (+)
G26360 NA non-coding upstream 209101 30510535 ~ 30522510 (+)
G26319 NA non-coding upstream 324964 30402565 ~ 30406647 (+)
G26262 NA non-coding upstream 928008 29799757 ~ 29803603 (+)
G26249 NA non-coding upstream 990529 29738702 ~ 29741082 (+)
G26243 LOC106587622,LOC106562410 non-coding upstream 1002074 29726394 ~ 29729537 (+)
G26430 NA non-coding downstream 169840 30944301 ~ 30945248 (+)
G26429 dnaja4,LOC107659503,LOC104917859 non-coding downstream 170842 30945303 ~ 30946095 (+)
G26433 NA non-coding downstream 181177 30955638 ~ 30955893 (+)
G26458 NA non-coding downstream 325810 31100271 ~ 31100516 (+)
G26461 NA non-coding downstream 329493 31103954 ~ 31106021 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 912059 29755040 ~ 29819552 (+)
AMCG00007788 NA other upstream 1006877 29622311 ~ 29724734 (+)
AMCG00007769 acsbg1 other upstream 1725232 29003095 ~ 29006379 (+)
AMCG00007763 tbc1d2b other upstream 1820045 28900058 ~ 28911566 (+)
AMCG00007754 NA other upstream 2031549 28682171 ~ 28700062 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other downstream 639693 31414154 ~ 31440378 (+)
AMCG00007854 NA other downstream 2989052 33763513 ~ 33794941 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other downstream 4836521 35610982 ~ 35620801 (+)
AMCG00007889 NA other downstream 5521757 36296218 ~ 36302841 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 6429409 37203870 ~ 37216558 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000330_03505183_03536773 OTUD7A coding CI01000330 null 3503305 ~ 3537059 (+)