AMCG00007806 (gtf2a2)


Basic Information

Item Value
gene id AMCG00007806
gene name gtf2a2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 30610218 ~ 30613192 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007806
GTTGAATTTCTCTATCAcaataactgcattttaaaataaaggtgcTCCGAAACGCCGCACTCCAGCACGAACAAGTCCACAGCGTGAAGGTCCGCGCTCTTCGTCATGTTTGTCCTTCTCGGTGTGCCGTACTCTGTGTACCGGGTTTATGCTTCCTGTTTAAGAGACAACAACAGGACGGGGAAGGGAAATACCAGTACGAGGGAGTTTTGATTATATTAACAACAAGGGCTTGTAACCTTGGTATTACTACTCAGACAGTTAGATAAAATGGCATACCAGCTTTACAGAAATACCACCCTGGGGAACAGTCTGCAGGAGAGTCTGGACGAACTCATTCAGACCCAACAGATCACTCCACAGCTTGCACTCCAGGTGCTCCTTCAGTTTGATAAAGCCATTAACACAGCGCTGGCGAATAGGGTGCGCAATCGGGTCAACTTTCGGGGATCGCTCAACACTTATAGATTCTGTGACAATGTCTGGACATTTGTGTTGAACGATGTCGAGTTTAGAGAAGTGACTGACTTGGTTAAAGTGGACAAAGTAAAGATTGTCGCTTGTGATGGAAAAAGTAAGTGGGAGCCTTTAAAAGTCCATGTAATGTTGTTATTCAATTAAGGAGTATGTATAGTGCATTTGTTTAccttacattattacatttcttagcagatgcatGTATAACATAATGAAGAACACAAAGTCttcagattacattacattacttcaGATTCTTTCTCAGATGAAATtaaatttttaaatgaatttctGTGTATTCTGGATACTTTGTGTGAGAGgacttcaatgtatttttttctggttctatttgttttaccctGAAAAGACTTCTGAGGTGTACAGAACAATTGTCAAATATAAATCAAGGTACATAACTATACCTTGTATTCTgttactgtttaaatgtatacagtctctaaaatgtaatctattatGTGAAACACTTAAGTCACAGGTCttgaacattttgtttcatttttattacagaCACTGGTTCCAATGCTGCTGAGTGAATAAAGGATTTTTGTGTAATTGTTACTGATGGAGAAGGGGCCCATGCTCCTGACAAAATGCCACACAGACAggactgtatatatttataatttatgacAGTGATTTCTGTAAAGACCTGAAGTATCAACCCTGTATATAGCAAATGGATCAGTGGGAATAATGGAGCTACAAATGGATCTGCCGAATCATCTGTTTTTGCATGacctttttttaatgactttcatATCCCAGCTTTTTTTCAGTTCATAACTGTTATTTAGCTTGAGATTTCtttaataaacttttatttaaaaaaacacatact

Function

symbol description
gtf2a2 Predicted to enable RNA polymerase II general transcription initiation factor activity and TBP-class protein binding activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to act upstream of or within transcription initiation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIIA complex. Orthologous to human GTF2A2 (general transcription factor IIA subunit 2).

NR:

description
PREDICTED: transcription initiation factor IIA subunit 2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0006413 translational initiation biological_process
GO:0005672 transcription factor TFIIA complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03123 TFIIA2, GTF2A2, TOA2; transcription initiation factor TFIIA small subunit

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007806 True 1336 mRNA 0.38 3 30610218 30613192

Neighbor

gene id symbol gene type direction distance location
AMCG00007802 bnip2,LOC107703138 coding upstream 2195 30590214 ~ 30608023 (+)
AMCG00007800 anx2a,anxa2,LOC108433632 coding upstream 172085 30429840 ~ 30438133 (+)
AMCG00007799 NA coding upstream 181088 30409031 ~ 30429130 (+)
AMCG00007798 rora,LOC103141220,LOC106561150 coding upstream 209115 30388193 ~ 30401103 (+)
AMCG00007797 vps13c coding upstream 567037 29945120 ~ 30043181 (+)
AMCG00007805 otud7a,LOC107715690,LOC107659507,LOC107550219,LOC107752330,LOC107698115,LOC107598848,LOC108275340 coding downstream 118419 30731611 ~ 30774461 (+)
AMCG00007809 LOC107674425 coding downstream 269724 30882916 ~ 30915465 (+)
AMCG00007808 rps27,LOC104929087,LOC106605899,LOC108429942,LOC107084035,LOC100696027 coding downstream 328007 30941199 ~ 30943727 (+)
AMCG00007816 NA coding downstream 483546 31096738 ~ 31098357 (+)
AMCG00007813 idh2,LOC107714782,LOC107691122,LOC107715227 coding downstream 498453 31111645 ~ 31136247 (+)
G26360 NA non-coding upstream 87708 30510535 ~ 30522510 (+)
G26319 NA non-coding upstream 203571 30402565 ~ 30406647 (+)
G26262 NA non-coding upstream 806615 29799757 ~ 29803603 (+)
G26249 NA non-coding upstream 869136 29738702 ~ 29741082 (+)
G26243 LOC106587622,LOC106562410 non-coding upstream 880681 29726394 ~ 29729537 (+)
G26430 NA non-coding downstream 331109 30944301 ~ 30945248 (+)
G26429 dnaja4,LOC107659503,LOC104917859 non-coding downstream 332111 30945303 ~ 30946095 (+)
G26433 NA non-coding downstream 342446 30955638 ~ 30955893 (+)
G26458 NA non-coding downstream 487079 31100271 ~ 31100516 (+)
G26461 NA non-coding downstream 490762 31103954 ~ 31106021 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 790666 29755040 ~ 29819552 (+)
AMCG00007788 NA other upstream 885484 29622311 ~ 29724734 (+)
AMCG00007769 acsbg1 other upstream 1603839 29003095 ~ 29006379 (+)
AMCG00007763 tbc1d2b other upstream 1698652 28900058 ~ 28911566 (+)
AMCG00007754 NA other upstream 1910156 28682171 ~ 28700062 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other downstream 800962 31414154 ~ 31440378 (+)
AMCG00007854 NA other downstream 3150321 33763513 ~ 33794941 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other downstream 4997790 35610982 ~ 35620801 (+)
AMCG00007889 NA other downstream 5683026 36296218 ~ 36302841 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 6590678 37203870 ~ 37216558 (+)

Expression


Co-expression Network