AMCG00007807


Basic Information

Item Value
gene id AMCG00007807
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 30810794 ~ 30830616 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007807
ATGTCCAGTCGTGCTATTGTCCATGGTCCAAAAGGGAATATAGAGATCAAACCAGAAACTGCAACTGCTCCGAGAGCCGGTGAGGAGACCAGAGAAGCCACTAAAGAGCCTCTGGTGAAAGACAACTCGTCCCTCTTTGTGGTTGCCAGGATTTTGGCAGATCTCAACCAGCAGACCCCTACCAATCTTGCAGACCAGGCgaaaataaaagaagagaaTAAACCAACAGCGCTGTCGAGAGAGGATGGAAACACTGCCACACCTACCACCAACACCGACCCCGGCCCCAGACAAAGAAACAGGCGTGGGAGAGGTCGAATTGAGCAAGAATCTCCACAGAAAAAGCACAAATGCCACTATTCAGGTTGTGAAAAAGTTTATGGCAAATCATCCCATCTTAAAGCCCATCTAAGGACACATACAGGACAGAGTGGCCCCTACAGGAGCACATGTGTGGTTGAGGCGATGTGTCCACTGCAGCCCCTGGTGAAGTCTGAGCTGTGCAGCTCGTCGGGAGGAGAACGGCCCTTTCCTTGTACCTGGACCGACTGCAACAAGAAGTTTGCCCGTTCTGACGAGCTCGCCCGCCACTACCGCACCCACACCGGCGAGAAGAAGTTTGGCTGCCCTCTGTGTGAGAAACGCTTCATGCGTAGTGACCATCTGATGAAGCACGCCCGCCGCCACTCCGACTTCCAGCCTGGCATGCTGAAGCGACCCTATGGAGCCAATGCCCGCACGGGCTCCCTCAGCGACTACAGCCGCTCGGACGCTTCCAGCCCCACCCTCAGCCCTGCTAGCTCGCCTTAA

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K09208 KLF9S, BTEB; krueppel-like factor 9/13/14/16

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007807 True 810 mRNA 0.55 3 30810794 30830616

Neighbor

gene id symbol gene type direction distance location
AMCG00007803 NA coding downstream 171418 30619418 ~ 30639376 (-)
AMCG00007804 NA coding downstream 195909 30613989 ~ 30614885 (-)
AMCG00007801 foxb1,LOC103353681 coding downstream 301292 30508882 ~ 30509502 (-)
AMCG00007795 LOC103354956,LOC102781786,LOC102208509 coding downstream 946183 29799746 ~ 29864611 (-)
AMCG00007793 tpm1 coding downstream 1035841 29765938 ~ 29774953 (-)
AMCG00007810 rab8b,LOC106609700,LOC107585968,LOC108441837 coding upstream 85744 30916360 ~ 30924500 (-)
AMCG00007811 dnaja4,LOC108229883,LOC107099226 coding upstream 113996 30944612 ~ 30947926 (-)
AMCG00007812 rasgrf1,si:ch211-234p18.3,LOC107690363,LOC107709805 coding upstream 132428 30963044 ~ 30982020 (-)
AMCG00007815 NA coding upstream 273162 31103778 ~ 31111738 (-)
AMCG00007814 NA coding upstream 305850 31136466 ~ 31144404 (-)
G26370 NA non-coding downstream 199101 30610218 ~ 30611693 (-)
G26342 NA non-coding downstream 356166 30404998 ~ 30454628 (-)
G26352 anx2a,LOC105029377,LOC108433632 non-coding downstream 372806 30431806 ~ 30437988 (-)
G26231 NA non-coding downstream 1202198 29608317 ~ 29608596 (-)
G26165 NA non-coding downstream 1444549 29365624 ~ 29366245 (-)
G26416 NA non-coding upstream 73053 30903669 ~ 30903895 (-)
G26598 NA non-coding upstream 855155 31685771 ~ 31686432 (-)
G26626 NA non-coding upstream 951022 31781638 ~ 31781891 (-)
G26646 NA non-coding upstream 992126 31822742 ~ 31822969 (-)
G26684 NA non-coding upstream 1582664 32413280 ~ 32417500 (-)
AMCG00007768 NA other downstream 1796847 29001049 ~ 29013947 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other downstream 1889671 28894693 ~ 28921123 (-)
AMCG00007704 NA other downstream 3440275 27357731 ~ 27370519 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other downstream 4739946 26053764 ~ 26070848 (-)
AMCG00007684 shf,LOC108430988 other downstream 5179202 25630792 ~ 25631592 (-)
AMCG00007817 NA other upstream 361394 31192010 ~ 31246649 (-)
AMCG00007822 NA other upstream 508100 31338716 ~ 31342792 (-)
AMCG00007835 LOC107594750 other upstream 974283 31804899 ~ 31816151 (-)
G26961 LOC101154678 other upstream 4038819 34869435 ~ 34869807 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other upstream 5172577 36003193 ~ 36010995 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_024249 BX323824.1 non-coding NC_007136.7 CM002909.2 34511205 ~ 34512944 (+)
grasscarp (Ctenopharyngodon idella) CI01000330_03561340_03578253 KLF13, ZNF746, ZNF467 coding CI01000330 null 3561340 ~ 3578253 (-)