AMCG00007808 (rps27,LOC104929087,LOC106605899,LOC108429942,LOC107084035,LOC100696027)


Basic Information

Item Value
gene id AMCG00007808
gene name rps27,LOC104929087,LOC106605899,LOC108429942,LOC107084035,LOC100696027
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 30941199 ~ 30943727 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007808
TCCTTTTCTATGCAAGCAACGCTCAGCCAGTGAAAATGCCTGTAAGTTGATacacaaattgcattttatgtCTCTAACTCGTATTTATATTGATTGACACTTGATTACATGTGTATTTACCTTCAATTGAATgagtttttggttgtttgtgaCAGCCTGCACGCGTTTATGGAGCTTGTTGTGGCGGACACATGGCACTGCGCGGGCTGCTCGTGGAAGGGCTGGGCCTGGTGTCGCTCGCATCTGCTGTGAAAGTgtacaaaacatgcattttgtgtAGTTCTAGTTTATGTTTCATGTTTATTGTTATCTTTTTGTTTAACTATGTATTCCCgctcgctttttttttttttttttttagctgggCCTTTGTTAATAATATCCAAGCACAGTGTATtgatatgattaaaatatatatgcagaaaataataattagtatcACTTTATTAGGCTTCCTAATTGAATTCCTGTTAGAGTTAAATGCAAGTGATTTGATTATTGTTCATACATAGAACGATGCATGAAAAAGCAGCTTCGCATCAGGACTCAAAATGTCGTCTGGGAAAGAATCGTCGTTACAATTAGATTTCATCTGCAGTTCTCGGTATTGGAAGATAAAACTGTGTTAAGATTTTCTGTAATAGTGAAGCCttgtggaaatgtgtgttttaggCTTAATTTCGATACTTGGTGTGTAAACTCGTGGCTATGCAAACAGGTGTTCGTGTTGGAGTCTACATCAATATTTCGGATTTCATTTCAGTTGGCTAAAGATCTACTGCATCCTTCTCTTGAAGAAGAGAAGAGACAACATAAGAAGAAAAGATTGGTCCAGAGCCCGAATTCATACTTCATGGATGTGAAATGTCCAGGCTGCTATAAGATCACTACGGTGTTCAGTCATGCCCAGACGGTGGTGCTGTGTGTGGGCTGCTCCACGGTGCTCTGCCAGCCTACAGGAGGGAAAGCAAGGCTCACAGAGGGTAGGTGGGGAATGTCCTGAACAAAGCTCTCATTCACTCTTTGTATCACAGTTGGAATTACTGTGGGGCTTCCTAAATCATTTAAACTCTGTATTTCTTGTAAGTGAAATTTCCATTGCAGAAATGGTTTCCTATCGTTCAACTGAGTGGCAAAACTAATTATACAAATGCaaaggtgtatatatatgtagacaCACAAGCTGTGAAATACCACTAATATGTCTATTGAGGAACCAAACAGCACTAGCAAAATATGCTTCATATTTGTGTGGTAGCAACTCTTCTACACCTACATTAACCCTAGTCAGCAAGAATGTAGCCCATTCTCCTTTGATTTTACTGGAAAGCCCCAAGTTACAGGCTGCTCTTGTAGGGATTGGTCAAGTATAACTTAAATGTTATGGTGAGGATTCAGGAGATACTCTGCCAGTGTGATGAGAAGTGACCCACTATATCTGTCTCTGGACTCCCTATTGCAGTCTGGGCCAGGTTTTGGGTTGCGCTCCAGCCGACCAGAAGTGCTTATCTTGTCAGTGCAATCTGTAAACGTGTATCCTCCTTGCAAAAGGAAAATGACAGCAAGTATTACTGCATTCTTGTTTTGTCAGTGCTTTGTATGGTTCCATGTGTTTttggcttttattttacttggaCAGTGAATCTTGCAACTCTAGGTagtttttaaaatttgaaattgaTACTATATAAACCTTTCAGGTACTTACTTAgtcaattatattataaaagtgcagGTATAATTTCTCACCTAATGTTTTTCAGGttgctctttcagaagaaagCAACATTAAAGGATGAAAATGGAAGTGTCACATTGTACAGAGAAGTTATGTTTCACATCACTGATCAATCAATGCCTTATTAACTATTCATTGATTCCAATGaatgctaattaaaatgtaattatgtgttTGAATGATTCATGGCAGGTTGTTTCTGTTGTGTAATCTGTTCGGTTCTGGAAATAAAGCCTTACATGTGTGCATAAGTCTGTCTCTATTACAGTAGTAATTTAAGcttgattttaaaaatctgGTCTTCCTTCTGTGGTCACAGCCCACTCTAGGGATGTTGGAAGACTTCTTACCCATGTTTCATTGCACAGTATCCATTTGTATTTTCCTGCTGCTCCATTTGTTGAAGCAAAtattaacaattttaaattattagcCTGTATATTATCACGGAGGTTTGCTTGTATGTATTCAACTTGCTCACTCATGAGGCTTGCTTATACTTGCCTATGCATTTTCatagttttgtttattaatatatattctattcCCAAGCACCTGCTTTGAGAATTAACCACAGTAACTCAAAGCTTATTGAATGGTTTACTCCCACATAATGTAAACTTGTACCAAGtaattaaagttatatttaacttactataaacaaatgcaaaattatgAACTTGTGTTCTTAGGATAACAC

Function

symbol description
rps27 A structural constituent of ribosome. Involved in rRNA processing. Located in cytosolic ribosome and nucleus. Part of cytosolic small ribosomal subunit. Is active in postsynaptic density. Implicated in Diamond-Blackfan anemia 17.

NR:

description
PREDICTED: 40S ribosomal protein S27 isoform X2

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02978 RP-S27e, RPS27; small subunit ribosomal protein S27e

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007808 True 2438 mRNA 0.37 2 30941199 30943727

Neighbor

gene id symbol gene type direction distance location
AMCG00007809 LOC107674425 coding upstream 25734 30882916 ~ 30915465 (+)
AMCG00007805 otud7a,LOC107715690,LOC107659507,LOC107550219,LOC107752330,LOC107698115,LOC107598848,LOC108275340 coding upstream 166738 30731611 ~ 30774461 (+)
AMCG00007806 gtf2a2 coding upstream 328007 30610218 ~ 30613192 (+)
AMCG00007802 bnip2,LOC107703138 coding upstream 333176 30590214 ~ 30608023 (+)
AMCG00007800 anx2a,anxa2,LOC108433632 coding upstream 503066 30429840 ~ 30438133 (+)
AMCG00007816 NA coding downstream 153011 31096738 ~ 31098357 (+)
AMCG00007813 idh2,LOC107714782,LOC107691122,LOC107715227 coding downstream 167918 31111645 ~ 31136247 (+)
AMCG00007818 LOC106573467,LOC106561177 coding downstream 326948 31270675 ~ 31302984 (+)
AMCG00007820 NA coding downstream 361309 31305036 ~ 31317396 (+)
AMCG00007819 NA coding downstream 381355 31325082 ~ 31339183 (+)
G26360 NA non-coding upstream 418689 30510535 ~ 30522510 (+)
G26319 NA non-coding upstream 534552 30402565 ~ 30406647 (+)
G26262 NA non-coding upstream 1137596 29799757 ~ 29803603 (+)
G26249 NA non-coding upstream 1200117 29738702 ~ 29741082 (+)
G26243 LOC106587622,LOC106562410 non-coding upstream 1211662 29726394 ~ 29729537 (+)
G26430 NA non-coding downstream 574 30944301 ~ 30945248 (+)
G26429 dnaja4,LOC107659503,LOC104917859 non-coding downstream 1576 30945303 ~ 30946095 (+)
G26433 NA non-coding downstream 11911 30955638 ~ 30955893 (+)
G26458 NA non-coding downstream 156544 31100271 ~ 31100516 (+)
G26461 NA non-coding downstream 160227 31103954 ~ 31106021 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 1121647 29755040 ~ 29819552 (+)
AMCG00007788 NA other upstream 1216465 29622311 ~ 29724734 (+)
AMCG00007769 acsbg1 other upstream 1934820 29003095 ~ 29006379 (+)
AMCG00007763 tbc1d2b other upstream 2029633 28900058 ~ 28911566 (+)
AMCG00007754 NA other upstream 2241137 28682171 ~ 28700062 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other downstream 470427 31414154 ~ 31440378 (+)
AMCG00007854 NA other downstream 2819786 33763513 ~ 33794941 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other downstream 4667255 35610982 ~ 35620801 (+)
AMCG00007889 NA other downstream 5352491 36296218 ~ 36302841 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 6260143 37203870 ~ 37216558 (+)

Expression


Co-expression Network