AMCG00007809 (LOC107674425)


Basic Information

Item Value
gene id AMCG00007809
gene name LOC107674425
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 30882916 ~ 30915465 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007809
ATGGTCCTGACTAGATTCCTCAACAATAGCTCCCCCCATCAGTGCTCTCACAATCAGAGTGATGAAGCTTCATGTCTTGTGGGATTCGATGAGCTTCACAGACTCTGGGAGCAAGCAGCGAGAGGGAACCTGAGCAGACCTCTGCagctggaggagaggagaaacaAAGCCCAGCCTGAGACCACCATaatcacattcaaattcaaatatttattcaccCCTAAGAAGGCCTTCTCTTATGCTCAAAAGGCCCAGAAGGCTTGGATAGAGAAGACCTTTCACAAAAGAGAATGTATCCACATTTTTCCCAACACCAAAGACCCAAATAGATGTTGCTGTGGCCATCTGCTTAATCAACACGTAGCCATCCTCCCCGGCTGCCTGACCAACAAATCCACAGAGGAGAACAACCAACTGGTGCAGGTGGACCCCCAGCCAGAGAAATGGTGCGTCTCCAAACACACGAAGACCTCCCCCACCGACTCCTACGGCATCATCGAGTTCCAAGGAGGAGGCCACAGCAACAAGGCCATGTATATCAGGGTATCATATGACACAAAGCCTGACAACCTGCTTCACCTGATGGTGAAAGACTGGCAGCTGGAGTTGCCCACCCTCCTAATTTCAGTTCATGGAGGCCTTCAGAACTTTGACCTGCAACCCAAGCTCAAGCAAGTCTTTGGGAAAGGCTTAATCAAAGCTGCCATGACAACAGGAGCCTGGATATTCACTAGCGGAGTTAGTACTGGAGTGATCCGCCACGTTGGAGATGCCTTGAAAGACCACTCCTCCAAATCCAGAGGGAAAATCTGTGCCATAGGAATAGCTCCTTGGGGAATAGTGGAGAACAAAGAAGATCTCATTGGGAGAGACGTAACAAGACCCTATCAGACGATGTCCAACCCTCTCAGCAAGCTGTCTCTGCTCAACAACAGTCACTCCCACTTCATCCTGGCTGACGATGGCACTTATGGGAAATATGGGGCAGAGGTCAAGCTGCGACGACAACTAGAAAAGCACATCTCTCTGCAGAAGATCAACACCCGTCTGGGCCAGGGGGTGCCAgttgtgtgtttgattgttgAAGGGGGCCCCAATGTGATCTCCATCGTGCTGGAGAGCCTGCGGGAGGACCCCCCAGTGCCAGTGGTGGTCTGTGATGGAAGTGGAAGAGCTGCGGACATCATCTCATTCGCACACAAATACTCAGAGGAAGCGGGggtGATTAGCGACAGTCTGAGGGATCAGCTCCTGGTCACCATTCAGAAAACATTCAACAACAGCAGATATCAGGCGCAGCAGCTGTTCATGATGCTTATGGAGTGCATGAAGAAGAAGGAGCTCATAACAGTGTTTCGAATGGGCTCAGAAGGACAGCAGGATATCGAGATGTCCATACTGACTGCATTGCTGAAAGGTACCAATGCATCTGCGCCTGACCAGCTGAGCTTGGCTCTCGCCTGGAACCGAGTGGACATCGCCCGCAGTCAGATTTTTGTGTATGGACATCACTGGCCTCCTCTCACCAACCTGGCGGCCAACGAATCTCCATCCAAGGAGCGTGAGAAAGGCCCAGCGGTTACCAAACGCACCACCAAGCACAAGGGCAAGGgcaaaaagaaagggaaaggaaaaggaaaagaggaACCAGAGGAAGAGACGGATCCAAGAAAGATAGAATTGCTTAACTGGGTCAACTCTCTTGAGCAGGCCATGATGGACGCCCTGGTGTTGGATCGAGTGGACTTTGTGAAGCTGTTGATCGAGAATGGGGTGAACATGCATCACTTTCTCACCATTCCCCGGCTTGAAGAACTGTACAATACTAGGCTAGGACCACCAAATACGTTAAATTTTCTTGTCAGGGATGTTAAGAAGGGAAACCTCCCCCCGGACTACCACATCAGTCTGATAGACATCGGGCTGGTTCTGGAGTACCTTATGGGTGGAGCCTACCGCTGTCACTACACCCGGAAAAGTTTCCGCAGCCTCTACAACAACCTGTTTGGACCAAAGAGGCCAAAAGCTCTTAAACTTCTAGGAATGGAGGATGATGAAATGCCAAGCAAGGGacacaaaaagaagaagaagaagaagaaagaggaggagatTGACATTGATGTGGACGACCCCGAGGTCAGCCGATTCCAGTTCCCCTTCCATGAGCTCATGGTTTGGGCCGTGCTGATGAAGCGCCAGAAGATGGCGCTGTTCCTGTGGCAGCGTGGCGAGGAGGCCATGGCCAAGGCCCTGGTGGCCTGCAAGCTGTTCAAATCCATGGCCCACGAGTCCTCAGAGAGCGAGATGGTGGACGACATCTCTCAGGACCTGGACAACAACTCCAAGGAGTTTGGGCAGCTGGCCTACGAGCTACTGGATCAGTCTTACAAGCATGACGAGCAGGTGGCCATGAAGCTGCTGACCTACGAGCTGAAGAACTGGAGTAACTCCACATGTCTGAAACTGGCTGTGGCAGCCAAGCACCGTGACTTCATTGCACACACCTGCAGCCAGATGCTGCTCACAGACATGTGGATGGGCTGCCTGAGGATGCGCAAAAACCCGGGCCTTAGGGTTATTATGGGCATTGTTTTCCCACCCAGCATCCTGTTCCTGGAATTTCGGGGAAACGAGGACCTGTCCTTCCAGACGTCAGCGGAGAATGAGGAAGCAAaggaaaaggaagaagaaagcaAGgatGGTAATCTGGAATCAACCTCAAAGAAAGGGGATGAAGAAGACAGCGATAAGAAGCAAAGGAGAGTCCCTATAGGGACAAAGATTTATGAGTTTTACAATGCCCCCTTTACCAAGTTTTGGTTCTATACTATTTTCTACCTGATGTACTTGATGCTTTTCAACTACGTCATCCTGGTGAAGATGGAGCGTTGGCCCACCCTGCAGGAATGGATTGTCATCTCCTACATCATCACCCTGGCTCTGGAGAAAGTCAGAGAGATCTTGATGTCGGAGCCGGGCAAACTGAAGCAGAAGATCAATGTTTGGCTGCAGGAGTACTGGAACATCACCGACATGGTGGCGATCTCTGTGTTCCTGATGGGCCTGCTCCTCCGGCTGCAGAATCAACCTTACATGGGCTACGGCCGCGTCATATACTGCGTGGATATAATTTTCTGGTACATCCGGGTGCTGGACATCTTTGGAGTGAACAAGTATCTGGGACCCTATGTCATGATGATCGGGAAAATGATGATTGACATGCTGTACTTTGTGGTGATCATGCTGGTGGTGCTGATGAGCTTCGGCGTGGCGCGCCAGGCCATCCTGCACCCTGACGAGGAGCCCACCTGGCGTCTCGCCCGCAACATCTTCTACATGCCCTACTGGATGATCTATGGAGAGGTGTTTGCGGACCAGATAGACCGTAAGACTAGAATTCATACTCCCTGTGGAGATAACCTGTATGATGAAGATGGGAAAAAGATGCCACCCTGTATCCCCGGGGCCTGGCTCACTCCTGCTATCATGGCCTGTTATTTACTGGTTGCCAACATCCTCCTTGTGAACCTCCTCATTGCAGTCTTTAATAACACTTTCTTCGAAGTGAAGTCCATCTCAAACCAGGTGTGGAAGTTCCAGCGTTATCAGCTCATCATGACCTTCCACGACCGGCCTGTGCTTCCTCCCCCCCTCATTATCTTCAGTCACATTTACATCATCGTGAAGCGCATCTGCTGCCGCTGCAAGAGGAGGCAAGAAGGCGACCTAGATGAGAGCGATCGAGGACTAAAGCTGATCCTTTCCGAAGAGGAGATGAAGAAACTACATGAGTTTGAAGAGCAGTGTGTGGAGGAATATTTCCAGGAGAAGGAAGATGAACAGCTGTCTTCCAATGATGAGCGCATTCGAGTTACTTCAGAAAGGGTTGAAAACATGTCCATGCGTCTGGAGGAGGTCAACGAGAGGGAGCATTTCATGAAGGCCTCCCTGCAGACAGTGGACCTGCGGCTGGCCCAGCTTGAGGAGTTCTCGGGGCGGATGTTGAATGCTGTGGAGAAGCTGGCCGGCGTGGACAAGTCTGAACTGTCCCGATCCCGGGCCTCCTCAGAGTGTGATCCTGGCTTCCTTCTACGCCAGAGCAGCATCAACAGCTCAGATGGCTACAGCATCTATCGCTATCATGTGGACAGCGAGGAGCACTTGTATGATGAGAATGGAGCCTCAGCATCACCTCGGGGACTGAGACCCCCTTCGAAGGCCAAGGAAGAGAAGGAGGTTGTGGACAGAAAGATGCAGCTCAAGCCAGAGTACCAAGGCAGCTTCTATCACACATCCAGTCCCACGACCTCCAAGGAATATGGCCAGACATTAGGAGTTGTTCCAGATTCCAGGCAACCAAGtgtagacattttaatttcctcctcTAGTGATACGAAAGCTCAGCCAGATGATCCTGATTTTCAGAGAGAACCAAAACCTTTGCAGTCTGTGGTGAATGGTGAGGACACTCCACGGGTTGTACTTCGAAACACCGGCTTAGAAAGAGCACAACTGGAAGCCACAGTCTCCTACCCCTTGGAAAAGTCCAAAGCTTTGCGGTACTATCCATCACAAGTCTATAATGCTTCTCCACCTACTACAATAAAGTCCAGAAGTAGCATCATATTTACCCCAGCAGCAGGGGCAGCTGAAGATGAAGGCAACTGGGCCATGGACTACCAGTCCTTAATGGACCAGGTTACCAAGTCTCCGATAGGACGGTGGACAGCTTGTTTCGAGTACAAAGTTCACCCCAGCTCGTTTGGGAAGCCGCCCCAAGTTTCCATTGTGAGGCCATCTCAAGAGGACCCTATAGGCACAGAGGCCGAGTCACAGGCCGAGCTGAAGCAGCTGGTCACAGACACAATGGATGATGGCGAAACTTCAGGGGACAGAATGGACACAGACCACCTGTTTGTAGCCGAGGACAGGATTTATCCATCTCTCAGGTCAAAGAGTTTGAATGCCAACCCGAGGAAGGTGAGAGCCAAGGGGGACAGCACAGAGAAGCTCAGAGGAGCCAGCAGTGTCAAAAACATTGTGGTGGCTTGTGGCAATACAACGGAGGAACAGGAGGTGGAGACAAAGGAGAATGAAGTGCTCAAGCAGAACTCATCTACTGAAACAGACTGCTGA

Function

NR:

description
PREDICTED: transient receptor potential cation channel subfamily M member 1-like

GO: NA

KEGG:

id description
K04976 TRPM1; transient receptor potential cation channel subfamily M member 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007809 True 5136 mRNA 0.51 27 30882916 30915465

Neighbor

gene id symbol gene type direction distance location
AMCG00007805 otud7a,LOC107715690,LOC107659507,LOC107550219,LOC107752330,LOC107698115,LOC107598848,LOC108275340 coding upstream 108455 30731611 ~ 30774461 (+)
AMCG00007806 gtf2a2 coding upstream 269724 30610218 ~ 30613192 (+)
AMCG00007802 bnip2,LOC107703138 coding upstream 274893 30590214 ~ 30608023 (+)
AMCG00007800 anx2a,anxa2,LOC108433632 coding upstream 444783 30429840 ~ 30438133 (+)
AMCG00007799 NA coding upstream 453786 30409031 ~ 30429130 (+)
AMCG00007808 rps27,LOC104929087,LOC106605899,LOC108429942,LOC107084035,LOC100696027 coding downstream 25734 30941199 ~ 30943727 (+)
AMCG00007816 NA coding downstream 181273 31096738 ~ 31098357 (+)
AMCG00007813 idh2,LOC107714782,LOC107691122,LOC107715227 coding downstream 196180 31111645 ~ 31136247 (+)
AMCG00007818 LOC106573467,LOC106561177 coding downstream 355210 31270675 ~ 31302984 (+)
AMCG00007820 NA coding downstream 389571 31305036 ~ 31317396 (+)
G26360 NA non-coding upstream 360406 30510535 ~ 30522510 (+)
G26319 NA non-coding upstream 476269 30402565 ~ 30406647 (+)
G26262 NA non-coding upstream 1079313 29799757 ~ 29803603 (+)
G26249 NA non-coding upstream 1141834 29738702 ~ 29741082 (+)
G26243 LOC106587622,LOC106562410 non-coding upstream 1153379 29726394 ~ 29729537 (+)
G26430 NA non-coding downstream 28836 30944301 ~ 30945248 (+)
G26429 dnaja4,LOC107659503,LOC104917859 non-coding downstream 29838 30945303 ~ 30946095 (+)
G26433 NA non-coding downstream 40173 30955638 ~ 30955893 (+)
G26458 NA non-coding downstream 184806 31100271 ~ 31100516 (+)
G26461 NA non-coding downstream 188489 31103954 ~ 31106021 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 1063364 29755040 ~ 29819552 (+)
AMCG00007788 NA other upstream 1158182 29622311 ~ 29724734 (+)
AMCG00007769 acsbg1 other upstream 1876537 29003095 ~ 29006379 (+)
AMCG00007763 tbc1d2b other upstream 1971350 28900058 ~ 28911566 (+)
AMCG00007754 NA other upstream 2182854 28682171 ~ 28700062 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other downstream 498689 31414154 ~ 31440378 (+)
AMCG00007854 NA other downstream 2848048 33763513 ~ 33794941 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other downstream 4695517 35610982 ~ 35620801 (+)
AMCG00007889 NA other downstream 5380753 36296218 ~ 36302841 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 6288405 37203870 ~ 37216558 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_024250 trpm1b coding NC_007136.7 CM002909.2 34576067 ~ 34615463 (+)
grasscarp (Ctenopharyngodon idella) CI01000026_04510794_04529529 TRPM1, TRPM1A coding CI01000026 null 4510626 ~ 4529529 (-)