AMCG00007817


Basic Information

Item Value
gene id AMCG00007817
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 31192010 ~ 31246649 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007817
ATGAAGTATTCCAAGGCCATCTCCTGCCTGCTGTGGCTGTCCGAGCTCCCACTGGTGGGCCGCAATCACGCGTCTCAGATCAGAAGGAAGCACGTAGGCCAGAGCTCCGTCATCTTCACAACGTGTCGGAGGAACCTGCAAAACACAGGCGAAAGGGGTGTTAATGAAGACACGCAGGAGTCGGGGAAGAGAGTTGCTGTGATTCCCCCACCCCCTAACAGCTGTGGTAATTACGGACAAAAGCGCTACGATCAATGTTTTCCTGTCCTCTTCTTGGTAGTGACAGTGCTGCAACTCAAACTGACATTCACAAGACCATATTGTAAATGGAGCCTTGTGTACTTTGTCCTCACTGTAGCTGGCTATGCACCCCTGCTGTGCCCCTACAGGAAGTGTACAGAACATTACAAGCAAAAATTTCAGGAGACAAACTCAAAACTCCAATACATCCATGGcaataaactggaaaaacagaagACGCATCCCGTTTACTCCTCCGGCAAAGAGACGTTCATGGAAAACAGTGAAACAATCAAGCAAGCCATGGCTCCCCGTCTCTCGAATCCCTCCGCCGAGACAGAGCACTGCAGAGTTTCCATGTCCATCACTGTGCGGACAGCTGCTGGCAAGCAAACCCCACACACCCTTCGAGTCAGAATGTTCCCCTGGATTTTCCCTATTGCCCCTCTCAATCCCAATCTGAGCTCCACCCTCGCCTCTGCCAGGGCCATTaGGTTTTTTGAGGATTCCCTGCACTGGGAGGagaatgcaaattacaaactgatACAATGCAAACGGCGGTACGCGGAGACTGGGCGAGTGGCCTTTCACAATTGTCACGGCCATTACGTCACCATGGAAACAGAGGCTCTGGAATTCTACCTCCAACACTTTGATTTACGGCCTTCTGTTCTGGGCTGCTTTTGA
>TU33227
CCGCGCGCAGCGCCGCAGCTCGAGACTTCACGCACCGATACACGCGCAGCCCCTCGCCATCCCGCACGCTGAGCCACGCAAGAGGGGCGGCTTTCACAAACCAGCATCTATCAACCGCGCATTTGCGTCACAAATTCAAACCAAAACCTTCAAAGCAATTACCGTGAAGATCAACCAGTTTCTGGTGTATAGAGTTATTGCCGGACTGCTGTCAATAAAGCATGGTCAGCAGCATAGTCCCAATAGTCTGCAATACAATTCAAACAGCACCGCAAGGCTTGGGGTTCAGTATCCGTCAGCAGCCGGGCAGCACGTCACCGCACACACGGAGCTCGTCGACCTCAGAAGACAAGAGGTGAAACTAGACAGTGACAACTCAAGCTTTGAGAGGCTTCTCAAGTCACAGACACTGACTGCTCTGCAGGACGACTACCCTCCCAACAAAACAGAGTTTGTGGTCAGCACAGCTGTGGTAATTACGGACAAGTGGGTTCgttcaaaaacaaatgctacaaGAAGAGATAAGACGGAAACATGGCAGCAATTATCAGGACTTGAACATTTTTACAGCTATAAATATATCTCCTGCAGCACTTCGCAAAGTTGCTCTGGATCCAGCTGAAAGGAAAGAGCCTGTATCAGCAACAGAAGATTCCCCGTTTACGTGGACAGCCAACTGTGCACTACAGTTAGCGAGGGCTGGCCTCAATTCTTTTAGTTAATGGGGAGCGGAAGAAgaatgaaggggaaaaaatgtagTGTTCCTGCCATTTTCACTTGAACAGTAATGATGTAATTTATGCTAATAACATGCAAAGTCTATGCTGGTATATCAAATGTAATGTGTTCCAGTTTTTAAGACTACACAAATTATTGCCCTTGCTCAATGGCCTTACAGTTTAAATGACTACAGTCACAGACCTACACCAAACACAAGACACGTGTCAAGGCTCTAATGTTTTAAGTAAATGCTGGGCCTGAAGATCAGCGGGTACATTGAGGTCTCTGTGATCGGATCACAGCAACCCATGTTTCTAATCATTGAATACTGAAGAGCAGAACTTTTCCTAAAGTCACGAATAAGATGCTTAAATGATTATAAAATTTCACATCAAGAGCACAGTTCCATAAATGCTTCTAAAAAATATCAAACCTCACAGCTTGAACTTAATTTGCCATCTGTACTGTTAGGCGCATGCAACTGAATTGCAATGTTCTACCAaaccacataaaaaaaagtacaagttTCTTTGTTGGACTGCTTCGCCCACCTATCTCCTCGGTGATGTTAGCTCTTGAAATAAAATTCCCTCAAGAACATTTGCACTTCATGGACTGTTAGGTagaattaaatcataaaaaccATTGGGTGGAGAAAGCAAAGGGAGATTTCTCAAAATAGCCTTAAAAAGAGCCATAAACCTTGAATGACAGTCACAGAGCTTCCAGATCAGATATATACACAGCATAATGTGCAGCAAATCCCTGGGTTCTGGCTAGACTGTCCACCATCCTGCTTAAAATAGCACCACTTGCAGGCTTGTATAAGAGCTAAATAATAGATATCTTAATGACATAGCATATCTTACGTCAACagaaaggttcagttcctcagctTTGAAAACCATAAAGCAATTAATTCTGTTGATTTGGCTGCAGATGAAGAACATCAAATGGTAACAAGCACTTTGGGTTGTCGACCAGCATGGCAAACAATCTGACGTGGACCAAGGCAATCCTGTCAGTTCCCATGGCTAGCTTTAACTACAGAGTGGAGTACAGCAGGATTCATTTATTAGGGTTTTgtcagcagaagaaaaaaaatcaggtcTTCAAAACCAGTTTTTCTTTGGACTAGCACACAAATTAATCTGCCTTAAGGTTTACAAGTGCGATCCTGCTTCCCCTTTCATTTCTATTGGAATGCAAATTAATCTTGTCTTACAAGCGGGCTGCAGTGAATTGGGCGAATCCAAACGCTGGGAACACTGACAGTTTGAACAAGGTTGTGCTCCCAAAGGGGTCTGCAATTTTCTTTGAAAGAACAGGGAGATATACCTCCCTTGTGGGAGGGAATGCCCAAATGAAGTTGTCCTACAGTTACCATGGACTGGTTGAcgtaaaatcagaaaaaattATCCCTTTGAATGCATTTGGAGTGCAGTCTGCAGTCTGAATTGTCCTGtcgattttgtgtgtgtgtttttaaattctacCACTTTCAAAGTTGTGAAGGCTGCAATGTATAACAACACTTACAAGTAATTGTATTGTACCATccatttaattacacaaaataaaataacactctCGATAACTGAGTCCGAATATGAGATCTCAGTGAAAATC
>TU33228
CCGCGCGCAGCGCCGCAGCTCGAGACTTCACGCACCGATACACGCGCAGCCCCTCGCCATCCCGCACGCTGAGCCACGCAAGAGGGGCGGCTTTCACAAACCAGCATCTATCAACCGCGCATTTGCGTCACAAATTCAAACCAAAACCTTCAAAGCAATTACCGTGAAGATCAACCAGTTTCTGGTGTATAGAGTTATTGCCGGACTGCTGTCAATAAAGCATGGTCAGCAGCATAGTCCCAATAGTCTGCAATACAATTCAAACAGCACCGCAAGGCTTGGGGTTCAGTATCCGTCAGCAGCCGGGCAGCACGTCACCGCACACACGGAGCTCGTCGACCTCAGAAGACAAGAGGTGAAACTAGACAGTGACAACTCAAGCTTTGAGAGGCTTCTCAAGTCACAGACACTGACTGCTCTGCAGGACGACTACCCTCCCAACAAAACAGAGTTTGTGGTCAGCACAGGTATTATTCAGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007817 False 927 mRNA 0.51 13 31192010 31227639
TU33227 True 2349 lncRNA 0.42 3 31221427 31246649
TU33228 False 481 lncRNA 0.53 2 31244540 31246649

Neighbor

gene id symbol gene type direction distance location
AMCG00007814 NA coding downstream 47606 31136466 ~ 31144404 (-)
AMCG00007815 NA coding downstream 80272 31103778 ~ 31111738 (-)
AMCG00007812 rasgrf1,si:ch211-234p18.3,LOC107690363,LOC107709805 coding downstream 209990 30963044 ~ 30982020 (-)
AMCG00007811 dnaja4,LOC108229883,LOC107099226 coding downstream 244084 30944612 ~ 30947926 (-)
AMCG00007810 rab8b,LOC106609700,LOC107585968,LOC108441837 coding downstream 267510 30916360 ~ 30924500 (-)
AMCG00007821 NA coding upstream 76085 31322734 ~ 31323081 (-)
AMCG00007823 NA coding upstream 108711 31355360 ~ 31358391 (-)
AMCG00007824 NA coding upstream 183667 31430316 ~ 31446063 (-)
AMCG00007831 NA coding upstream 454687 31701336 ~ 31727439 (-)
AMCG00007836 det1 coding upstream 549046 31795695 ~ 31797044 (-)
G26416 NA non-coding downstream 288115 30903669 ~ 30903895 (-)
G26403 NA non-coding downstream 316632 30800411 ~ 30875378 (-)
G26370 NA non-coding downstream 580317 30610218 ~ 30611693 (-)
G26342 NA non-coding downstream 737382 30404998 ~ 30454628 (-)
G26352 anx2a,LOC105029377,LOC108433632 non-coding downstream 754022 30431806 ~ 30437988 (-)
G26598 NA non-coding upstream 439122 31685771 ~ 31686432 (-)
G26626 NA non-coding upstream 534989 31781638 ~ 31781891 (-)
G26646 NA non-coding upstream 576093 31822742 ~ 31822969 (-)
G26684 NA non-coding upstream 1166631 32413280 ~ 32417500 (-)
G26764 NA non-coding upstream 2345573 33592222 ~ 33640336 (-)
AMCG00007768 NA other downstream 2178063 29001049 ~ 29013947 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other downstream 2270887 28894693 ~ 28921123 (-)
AMCG00007704 NA other downstream 3821491 27357731 ~ 27370519 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other downstream 5121162 26053764 ~ 26070848 (-)
AMCG00007684 shf,LOC108430988 other downstream 5560418 25630792 ~ 25631592 (-)
AMCG00007822 NA other upstream 92067 31338716 ~ 31342792 (-)
AMCG00007835 LOC107594750 other upstream 558250 31804899 ~ 31816151 (-)
G26961 LOC101154678 other upstream 3622786 34869435 ~ 34869807 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other upstream 4756544 36003193 ~ 36010995 (-)
AMCG00007907 NA other upstream 5595826 36842475 ~ 36846583 (-)

Expression


Co-expression Network