AMCG00007819


Basic Information

Item Value
gene id AMCG00007819
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 31325082 ~ 31339183 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007819
CTTTAATGCGCTGCTGCTGCGCTCTGCCCGCCTTCACACGGATTGCACGCAACAGCAGCAGCGCCGATATGTTTCCTTCCGCGCGTTGATTTGCACAAAGGGACTTTACACTGTGGAGTTCTCAAACTTTACTTAGGACTGTGGAGCCGAGAGCAGCTGGCGGAGCTGTACCTGCAGATCCACTCCCTGTCCGACTACACTCTGCTGCAGCAGTACGAGTCCCTCATTGACACACTGCTGGGGGAGCAGAAGGTCCAGAGCCTGGAGACCGAACAGCTGGAGAACCTGCTGAGACGGACAGAAGAGGTTACGAGTCGCCAGCTgacagagctggaggaggacaTGATGCAGCAGCTGGCCAGTGTGgagcagagagtgagagaggagGATCGGCAGAAACTAGAAGCAGCCACCGTGGAAATCCAGAGGAGACATGAGAACAAGGTGGCAGATTTACAGCTCGCCATGGAGATGCTGAAAAAGCACCAAGAAGAATCCTGGCACAACAGTTCTAGAGAGGATGTTAATCAGCTGAAAGAACAAATCGCTGAGATGACACAGgataatGAGCAGCTCAGAAGTTCTCTTATGAAAGCCCAGATGAATGTTTCTGTTCTGCAAGTAGAACTGGACAAGCTGAAAAATGACTATGCTGACCAGAGACTACAGCACGAGAGGGAGAAAGAGGTTCTGAAAACGATGTTGGTGGAACGTCAGTCCTACTCCAATCAGGTTGAATTCCTCCAGGCAATGAACAAGAAACTGTATGACAGCAATGATGGCTTGCGATCAGCCTTGGTGACCTACGTGGGGTCAGGCAAGAAGAGGCATCTCTCCCCAAGGGATGATAGTCCATCAATGAGAATAAAGCCAAGTGAACGAAGTATGCAGAGCCACAGCAGCTTAGCTAGTGAGGAGGATAGCATGACCGTGGATAATTATGCGCCCAATGACACCAAATACTCCCATGTGGCCAACTGGGCTGACCGGTACCTGGACAGTggagtgtctgtgtctctggaTATGGGGGATGACTCTGGCAGCGAGTTTGAAAGTGACAACAGTCAGGACTCTGTGGAGACCGTACATTACAGCTATTCTTATGTGCCACCTGACATGGAGatttcagatttaaagATGGAGGAGACGGCGTCTGTGGCTGCCAGTGGCCGGAGTTCCATCACCTCGTCCATCAGGAGACGACTCCCTGCTTTCACACCCAAGCGGGCAGATGCGGTTGATGTGGATGTGCCTGGCGCCTTGTACAGACTGGTTCTGGCTGGGGACGCAGGATCAGGGAAATCCAGCTTTCTGCTCCGACTAAGCATGAATGAGTTCAGAGGAGATATTCAGACTACTTTAGGGGTCGATTTTCAAATAAAGAAGATGCTGGTTGATGGGGAGCAGACCACCCTACAGATTTGGGACACTGCAGGCCAGGAAAGGTTTCGCAGTATCGCCAAATCTTATTTCCGGAAAGCACACGGAGTGCTACTGCTATATGACGTCACCTCAGAGAGTAGCTTCCTGAATGTTCGTGAGTGGATTGATGAGATACAGAACTCCACAGAGGATCACATCCCAATGTGTCTGATTGGGAACAAGAGTGACCTGAAGATGGGGATGCCGGAGTCTGGGTGTGTGGACACTTCTCACGGGGAGAAGTTAGCCATGGCGTACAATGCCTTGTTCTGTGAGACGAGTGCTAAAGATGGAACAAACGTAGTGGAAGCAGTGCTTCACCTCGCCAgGGAAGTGAAAAGGAATGTGGGTCTGAGAAAGAACTCTGAACCACAGATAAAACTGAGTATTGCTGATGGCAAGAAGGCTCTGAGCAGCTGCTGTGGGGTGTAGTGGTCTACCCTGAGCTTTGCGCAAGACCTCTCACCAGCAAGGAACATGTGTTGCATATGTTGGCAGTCTCCGAAACTGCAGAAGGACTCCTAATGAAGAAGGTTGCTTTGCAGTGGAGCTACACTGGAACCACTTTTAGCTTTGTTCCTGGTGTCATTTCAAGGTATGAAATAACAGCAGTGTTTCCAAAACACATGCTCCAATAACAATGGCCAGAAggactttttgtatttttatttaaaccttcTGCACCCGACATGCAAGTTCAGTGTGTTTTACTAAAGGATTCTCCAAACTTTCCTcacactttttagtttttgataTTCAGATTCaagagatttatatatatataatgtaaataaagagaacaaaacaattaatgtaCTAACCTATATTTAGCGCAGTTTTTAGTTCTAACCCCCTAATCACAAGCATTTTGCCCTCAAGAGTTTTTGTTACCTGACCTCTGATGTAGTAGGAGTCTGTTTTTCAACCACCTAGTATTCGATTACCAGTAACTTTTCAATGTAATACTTCTAAAGGGACTGTGCTGGTAAAAATCCACACTTCTGGGTGagctcattttgtttgtttggatgcACTTTAAATGGGAAGTAGACAATACTCCtggttttattctttttactGGGTACAACTTAAAATGGTTAGGCACAcgttattttttccccaaatatGTAACATCTGAGCATAATGTTCAAATTCCTCTTTTTACCTCTTTTCTGTAAAAATtggtattgtaattgtattttgctatgagatttacatgtatgtatattatacatgtattttatatatagattttatttttatttttaaataaccttccAAATCAAGCATTTCACCTTTTAATACCTCTTGCACTTAATGAGGGACCAATGGTATGaatgtttacatttcagttcTGGAACGAAAACATTGTATGCCATTggcagtattttgtattataattgtataataaatgcTCAAAGAGTTTGATACATAACA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K17199 RASEF, RAB45; Ras and EF-hand domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007819 True 2859 mRNA 0.45 17 31325082 31339183

Neighbor

gene id symbol gene type direction distance location
AMCG00007820 NA coding upstream 7686 31305036 ~ 31317396 (+)
AMCG00007818 LOC106573467,LOC106561177 coding upstream 22098 31270675 ~ 31302984 (+)
AMCG00007813 idh2,LOC107714782,LOC107691122,LOC107715227 coding upstream 188835 31111645 ~ 31136247 (+)
AMCG00007816 NA coding upstream 226725 31096738 ~ 31098357 (+)
AMCG00007808 rps27,LOC104929087,LOC106605899,LOC108429942,LOC107084035,LOC100696027 coding upstream 381355 30941199 ~ 30943727 (+)
AMCG00007825 NA coding downstream 156756 31495939 ~ 31497811 (+)
AMCG00007826 NA coding downstream 169488 31508671 ~ 31509949 (+)
AMCG00007833 hcn4,LOC102793391 coding downstream 196146 31535329 ~ 31536009 (+)
AMCG00007832 hcn4,LOC108263998,LOC102197830,LOC105930179 coding downstream 217252 31556435 ~ 31559455 (+)
AMCG00007830 hcn4 coding downstream 241543 31580726 ~ 31618878 (+)
G26483 NA non-coding upstream 106760 31218110 ~ 31218322 (+)
G26463 NA non-coding upstream 217833 31106714 ~ 31107249 (+)
G26462 NA non-coding upstream 218458 31106414 ~ 31106624 (+)
G26461 NA non-coding upstream 219061 31103954 ~ 31106021 (+)
G26458 NA non-coding upstream 224566 31100271 ~ 31100516 (+)
G26625 NA non-coding downstream 442455 31781638 ~ 31781891 (+)
G26645 NA non-coding downstream 483557 31822740 ~ 31822973 (+)
G26698 NA non-coding downstream 1283077 32622260 ~ 32622530 (+)
G26704 NA non-coding downstream 1548607 32887790 ~ 32888040 (+)
G26826 NA non-coding downstream 2649863 33989046 ~ 33990588 (+)
G26258 tpm1,tpma,LOC108237348 other upstream 1505530 29755040 ~ 29819552 (+)
AMCG00007788 NA other upstream 1600348 29622311 ~ 29724734 (+)
AMCG00007769 acsbg1 other upstream 2318703 29003095 ~ 29006379 (+)
AMCG00007763 tbc1d2b other upstream 2413516 28900058 ~ 28911566 (+)
AMCG00007754 NA other upstream 2625020 28682171 ~ 28700062 (+)
AMCG00007827 ell3,LOC103370942,LOC102298519,LOC102798071,LOC108431223,LOC107714787 other downstream 74971 31414154 ~ 31440378 (+)
AMCG00007854 NA other downstream 2424330 33763513 ~ 33794941 (+)
AMCG00007873 fam174b,LOC103466638,LOC101474125,LOC102798031,LOC103147863 other downstream 4271799 35610982 ~ 35620801 (+)
AMCG00007889 NA other downstream 4957035 36296218 ~ 36302841 (+)
AMCG00007923 LOC105031092,LOC105901836,LOC102299656,LOC101482251 other downstream 5864687 37203870 ~ 37216558 (+)

Expression


Co-expression Network