AMCG00007822


Basic Information

Item Value
gene id AMCG00007822
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 31338716 ~ 31342792 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007822
GCTGGAACTCGGAAACcttcaactaaaaaaaaaaaaaaaatgacgagtacgtataaaataatatacctTCCGTTTATTTAGCTTAATAACCGCGCATTGCACAAAAGCTGTTAAATATCTATCGATTGCTGAGTGTCTAAAGGCGCCTTTGTATGTGGGAGTGCGGCAGGACGGCATTGGGAGACGTTTTCTAGGCCGGAGTGTTGTTTACAATTTGTTCATCttcaaaaatgcaataaatctTCGACGCCTACATTAAAATGAGATGATGTAatgactgtgttgtgtgtaaatGTCATTCGTTATACCTGCGCCAAGCAGAGGGGTGATTAGTACAGTTAACTAATTTGATATTTATGTGCCTGTGTTTTCCGTTTAGTAAAAACCAACAATCAAGCCATTGCTAGCGCCGAGACTCTGAGCGGTGATCCCTCTGGCTTGTGTGTAGTGTGGGCCACTAGACGGGCATTTGCCCTGAATCCAGGTGTCCTTGTCCGCTGTGTCTTGCGTATGCCTGGATATTGGATGCGCGCCGTGCCAGCCAGCTCATTGAGGCTAGTCACTGTTTTGCGTAGTTTTCTCTTTGAATTCATAATCCGCAACCTGACTGTAACCAGCTCTGATTTTTGACAGGGCTTTCTGTCGGGGGGTCGACGTTTTCCTCGGTCTCGGAATACAGGGTCCCTGGCTGTGCTCCGGAGCGCCCCCCTTGCCACGTAGCCGAGATGTAGGCTAGTCTGCACAGAGTCGGGGTGATTTCTGTGCGTCTCGTActtcaattcaataaaatagtCCAGTCCGCCGTGACTGCACTCTTCCTACAGTTGGAGTAGAAATCGGTGTCCAGCTCACTGTGCATGCTGTGCTTTTATCTGTGATTTTTATGGATCTGCCAGGCGCTGTCGGGTAGTTTAAAGCGCCGTCCGCTGCAGCGAACGTTCTAGAACAATCCCAAACCAAGCGTGGGGGTGTCTGGACCGACACCGGCACTGAGGCACTCGTCTGCTTCTTGGGAAGTGCCAAAGTGGATGGGAGATGAAAAGTTTTTGACTGCCTGCATGCTCAGAGCGTCCTGGTTACATTGTCTATAGTAAAAGGGGGAAATCAGCGTGAACTTGCCCGTCAGAAGAATGCCAAGAAGCAAAATGCAGACGGCAAGGGCAAGAGGAATGACGATGGCTTGTCTGCAGCTGCCAGGAAGCAGAGGGATGCAGAGATTATGCAGCAAAAGCAGAAACAGGCCAAAGATAAACCAAAAGACCAACCCAAATAACTGAAAGAAGACTAAACATCCAGACAAGACTTCCCACGTTTTTTgccagaaagaaacaaaatcaattcaAGTCTTCTtggtattaaaacaaacttttttttttttttttcttgtctaaGTTCTGATGTCTAGATAACATGCATTATTGTAATCTTTCCTATGGGGGATTATATGGTTTGTAAGTTTCAGGTGAACTAATGACTTGGCAGGTTTTAGCAGAGTTCTGAATGACATGGCTACAAAAGTATGCTCGTGTTTGTCAGCATGCATGGGCTGTGGTCTCATGAACAGAATTTAGTGTAAAGAGAAGCAGATGTCACTGCTTGGATCAACACaatcttgtatttttgtatcaaaGTTTGCCCCCAACTtgaaatttatttaataaattgtaGCTTTTTAGTTCATGGGTTTTGTTCAATTGACTTAAACTGTTCTGTGGTCTCCTCTTGCATTTTATTGAAGATTCTAGTTTTTAGCATGATTTTATCTCAAACCCTTTTCAGAGTGAATGCTTGTGATGCATATGCAATCAGGTATTTGGCTAATATGTATGAGAGTTGATGCTCTAGAAAATATACAGCAGTGTGCTTAGAGAATATGTGGGTGTCAggaaggattttgtttttaacagggCCTTGATTTATTTGAGTTCTGTAAATGTACAACACTTTGTTTTGATGAAAACTGGACTATGCaaggtattcattttaaagcatttgtaaATAAGTATAATACATAATGAGTGGAATGGTTCGTGCACTGAAGGACAGGGTCCTGCAGCTCCCTTTCAATTAACtgaccaaaaccaaaaaaaaaacttggactGGAGTAAGACTGATCCAATAAAGGATTGAACTCTGGTAAAGACAAATTAACTTATGACCTAAAAATAGGCTTGGTATTCCAAAAGTAACTCCCAAACTTGGCTATAgcaatattaaacatttctgcTGCCTTGATCAGCTGTCTTTGTagtttctcatttatttcagaaagagcAGTTCTAGTGGCCTTCCATTCATTTAAACTGCTCATGAATACCTCACCAACAACTCAACTTATAGGGCTATATCTCTAGAGCTAGCCTGAGAACCCTGTCTTCATCCAAGTCCTTCCATATCCATAGCAATGGAAATCtaggtttttatatatataagccaATGTAACTAAAACCAAACCCACGTCCTACACATGTAGGAGCGGTGTAAACCCCccttattggaaaaaaaaacaaaaacctaaagaACAGTCTAGGATGGGAATAAGGTTCTTAAATGTCAATGTTCTATTATCCCAAAACAATAGTGTAAATTGCATCCCGTGCAGGAACAGCAAGTTCTAGAACTTTAATCAAACATtactaaaatatacatacaccaCATTATAATACGGACTTCAATTAAGGAAAGATCtgagatcaaatgaaaaatgaaattgaagCTTTGGAAATACCTACCTCTGATagtgcaaaaaatacataaccCTCATCATGTTATGTATCAAACTCTTTGAgcatttattatacaattataatacaaaatactgccAATGGCATACAATGTTTTCGTTCCAgaactgaaatgtaaacattCATACCATTGGTCCCTCATTAAGTGCAAGAGGTATTAAAAGGTGAAATGCTTGATTTggaaggttatttaaaaataaaaataaaatctatatataaaatacatgtataatatacatacatgtaaatctcatagcaaaatacaattacaataccaATTTTTACAGAAAAGAGGTAAAAAGAGGAATTTGAACATTATGCTCAGATGTTACatatttggggaaaaaataacgTGTGCCTAACCATTTTAAGTTGTACCCagtaaaaagaataaaaccaGGAGTATTGTCTACTTCCCATTTAAAGTgcatccaaacaaacaaaatgagctCACCCAGAAGTGTGGATTTTTACCAGCACAGTCCCTTTA
>TU33235
CGGGGAGTGATTTGCAGTGCGGCGGGGAGGACACAGCGGCGCGGAGGGAGAGGGTGGTACTAGAGAGCAGCCCGTAGGGTTCGCCAGCTGGAACTCGGAAACcttcaactaaaaaaaaaaaaaaaatgacgaGGGGAAATCAGCGTGAACTTGCCCGTCAGAAGAATGCCAAGAAGCAAAATGCAGACGGCAAGGGCAAGAGGAATGACGATGGCTTGTCTGCAGCTGCCAGGAAGCAGAGGGATGCAGAGATTATGCAGCAAAAGCAGAAACAGGCCAAAGATAAACCAAAAGACCAACCCAAATAACTGAAAGAAGACTAAACATCCAGACAAGACTTCCCACGTTTTTTgccagaaagaaacaaaatcaattcaAGTCTTCTtggtattaaaacaaacttttttttttttttttcttgtctaaGTTCTGATGTCTAGATAACATGCATTATTGTAATCTTTCCTATGGGGGATTATATGGTTTGTAAGTTTCAGGTGAACTAATGACTTGGCAGGTTTTAGCAGAGTTCTGAATGACATGGCTACAAAAGTATGCTCGTGTTTGTCAGCATGCATGGGCTGTGGTCTCATGAACAGAATTTAGTGTAAAGAGAAGCAGATGTCACTGCTTGGATCAACACaatcttgtatttttgtatcaaaGTTTGCCCCCAACTtgaaatttatttaataaattgtaGCTTTTTAGTTCATGGGTTTTGTTCAATTGACTTAAACTGTTCTGTGGTCTCCTCTTGCATTTTATTGAAGATTCTAGTTTTTAGCATGATTTTATCTCAAACCCTTTTCAGAGTGAATGCTTGTGATGCATATGCAATCAGGTATTTGGCTAATATGTATGAGAGTTGATGCTCTAGAAAATATACAGCAGTGTGCTTAGAGAATATGTGGGTGTCAggaaggattttgtttttaacagggCCTTGATTTATTTGAGTTCTGTAAATGTACAACACTTTGTTTTGATGAAAACTGGACTATGCaaggtattcattttaaagcatttgtaaATAAGTATAATACATAATGAGTGGAATGGTTCGTGCACTGAAGGACAGGGTCCTGCAGCTCCCTTTCAATTAACtgaccaaaaccaaaaaaaaaacttggactGGAGTAAGACTGATCCAATAAAGGATTGAACTCTGGTAAAGACAAATTAACTTATGACCTAAAAATAGGCTTGGTATTCCAAAAGTAACTCCCAAACTTGGCTATAgcaatattaaacatttctgcTGCCTTGATCAGCTGTCTTTGTagtttctcatttatttcagaaagagcAGTTCTAGTGGCCTTCCATTCATTTAAACTGCTCATGAATACCTCACCAACAACTCAACTTATAGGGCTATATCTCTAGAGCTAGCCTGAGAACCCTGTCTTCATCCAAGTCCTTCCATATCCATAGCAATGGAAATCtaggtttttatatatataagccaATGTAACTAAAACCAAACCCACGTCCTACACATGTAGGAGCGGTGTAAACCCCccttattggaaaaaaaaacaaaaacctaaagaACAGTCTAGGATGGGAATAAGGTTCTTAAATGTCAATGTTCTATTATCCCAAAACAATAGTGTAAATTGCATCCCGTGCAGGAACAGCAAGTTCTAGAACTTTAATCAAACATtactaaaatatacatacaccaCATTATAATACGGACTTCAATTAAGGAAAGATCtgagatcaaatgaaaaatgaaattgaagCTTTGGAAATACCTACCTCTGATagtgcaaaaaatacataaccCTCATCATGTTATGTATCAAACTCTTTGAgcatttattatacaattataatacaaaatactgccAATGGCATACAATGTTTTCGTTCCAgaactgaaatgtaaacattCATACCATTGGTCCCTCATTAAGTGCAAGAGGTATTAAAAGGTGAAATGCTTGATTTggaaggttatttaaaaataaaaataaaatctatatataaaatacatgtataatatacatacatgtaaatctcatagcaaaatacaattacaataccaATTTTTACAGAAAAGAGGTAAAAAGAGGAATTTGAACATTATGCTCAGATGTTACatatttggggaaaaaataacgTGTGCCTA
>TU33236
CGGGGAGTGATTTGCAGTGCGGCGGGGAGGACACAGCGGCGCGGAGGGAGAGGGTGGTACTAGAGAGCAGCCCGTAGGGTTCGCCAGCTGGAACTCGGAAACcttcaactaaaaaaaaaaaaaaaatgacgagtacgtataaaataatatacctTCCGTTTATTTAGCTTAATAACCGCGCATTGCACAAAAGCTGTTAAATATCTATCGATTGCTGAGTGTCTAAAGGCGCCTTTGTATGTGGGAGTGCGGCAGGACGGCATTGGGAGACGTTTTCTAGGCCGGAGTGTTGTTTACAATTTGTTCATCttcaaaaatgcaataaatctTCGACGCCTACATTAAAATGAGATGATGTAatgactgtgttgtgtgtaaatGTCATTCGTTATACCTGCGCCAAGCAGAGGGGTGATTAGTACAGTTAACTAATTTGATATTTATGTGCCTGTGTTTTCCGTTTAGTAAAAACCAACAATCAAGCCATTGCTAGCGCCGAGACTCTGAGCGGTGATCCCTCTGGCTTGTGTGTAGTGTGGGCCACTAGACGGGCATTTGCCCTGAATCCAGGTGTCCTTGTCCGCTGTGTCTTGCGTATGCCTGGATATTGGATGCGCGCCGTGCCAGCCAGCTCATTGAGGCTAGTCACTGTTTTGCGTAGTTTTCTCTTTGAATTCATAATCCGCAACCTGACTGTAACCAGCTCTGATTTTTGACAGGGCTTTCTGTCGGGGGGTCGACGTTTTCCTCGGTCTCGGAATACAGGGTCCCTGGCTGTGCTCCGGAGCGCCCCCCTTGCCACGTAGCCGAGATGTAGGCTAGTCTGCACAGAGTCGGGGTGATTTCTGTGCGTCTCGTActtcaattcaataaaatagtCCAGTCCGCCGTGACTGCACTCTTCCTACAGTTGGAGTAGAAATCGGTGTCCAGCTCACTGTGCATGCTGTGCTTTTATCTGTGATTTTTATGGATCTGCCAGGCGCTGTCGGGTAGTTTAAAGCGCCGTCCGCTGCAGCGAACGTTCTAGAACAATCCCAAACCAAGCGTGGGGGTGTCTGGACCGACACCGGCACTGAGGCACTCGTCTGCTTCTTGGGAAGTGCCAAAGTGGATGGGAGATGAAAAGTTTTTGACTGCCTGCATGCTCAGAGCGTCCTGGTTACATTGTCTATAGTAAAAGGGGGAAATCAGCGTGAACTTGCCCGTCAGAAGAATGCCAAGAAGCAAAATGCAGACGGCAAGGGCAAGAGGAATGACGATGGCTTGTCTGCAGCTGCCAGGAAGCAGAGGGATGCAGAGATTATGCAGCAAAAGCAGAAACAGGCCAAAGATAAACCAAAAGACCAACCCAAATAACTGAAAGAAGACTAAACATCCAGACAAGACTTCCCACGTTTTTTgccagaaagaaacaaaatcaattcaAGTCTTCTtggtattaaaacaaacttttttttttttttttcttgtctaaGTTCTGATGTCTAGATAACATGCATTATTGTAATCTTTCCTATGGGGGATTATATGGTTTGTAAGTTTCAGGTGAACTAATGACTTGGCAGGTTTTAGCAGAGTTCTGAATGACATGGCTACAAAAGTATGCTCGTGTTTGTCAGCATGCATGGGCTGTGGTCTCATGAACAGAATTTAGTGTAAAGAGAAGCAGATGTCACTGCTTGGATCAACACaatcttgtatttttgtatcaaaGTTTGCCCCCAACTtgaaatttatttaataaattgtaGCTTTTTAGTTCATGGGTTTTGTTCAATTGACTTAAACTGTTCTGTGGTCTCCTCTTGCATTTTATTGAAGATTCTAGTTTTTAGCATGATTTTATCTCAAACCCTTTTCAGAGTGAATGCTTGTGATGCATATGCAATCAGGTATTTGGCTAATATGTATGAGAGTTGATGCTCTAGAAAATATACAGCAGTGTGCTTAGAGAATATGTGGGTGTCAggaaggattttgtttttaacagggCCTTGATTTATTTGAGTTCTGTAAATGTACAACACTTTGTTTTGATGAAAACTGGACTATGCaaggtattcattttaaagcatttgtaaATAAGTATAATACATAATGAGTGGAATGGTTCGTGCACTGAAGGACAGGGTCCTGCAGCTCCCTTTCAATTAACtgaccaaaaccaaaaaaaaaacttggactGGAGTAAGACTGATCCAATAAAGGATTGAACTCTGGTAAAGACAAATTAACTTATGACCTAAAAATAGGCTTGGTATTCCAAAAGTAACTCCCAAACTTGGCTATAgcaatattaaacatttctgcTGCCTTGATCAGCTGTCTTTGTagtttctcatttatttcagaaagagcAGTTCTAGTGGCCTTCCATTCATTTAAACTGCTCATGAATACCTCACCAACAACTCAACTTATAGGGCTATATCTCTAGAGCTAGCCTGAGAACCCTGTCTTCATCCAAGTCCTTCCATATCCATAGCAATGGAAATCtaggtttttatatatataagccaATGTAACTAAAACCAAACCCACGTCCTACACATGTAGGAGCGGTGTAAACCCCccttattggaaaaaaaaacaaaaacctaaagaACAGTCTAGGATGGGAATAAGGTTCTTAAATGTCAATGTTCTATTATCCCAAAACAATAGTGTAAATTGCATCCCGTGCAGGAACAGCAAGTTCTAGAACTTTAATCAAACATtactaaaatatacatacaccaCATTATAATACGGACTTCAATTAAGGAAAGATCtgagatcaaatgaaaaatgaaattgaagCTTTGGAAATACCTACCTCTGATagtgcaaaaaatacataaccCTCATCATGTTATGTATCAAACTCTTTGAgcatttattatacaattataatacaaaatactgccAATGGCATACAATGTTTTCGTTCCAgaactgaaatgtaaacattCATACCATTGGTCCCTCATTAAGTGCAAGAGGTATTAAAAGGTGAAATGCTTGATTTggaaggttatttaaaaataaaaataaaatctatatataaaatacatgtataatatacatacatgtaaatctcatagcaaaatacaattacaataccaATTTTTACAGAAAAGAGGTAAAAAGAGGAATTTGAACATTATGCTCAGATGTTACatatttggggaaaaaataacgTGTGCCTA

Function

GO: NA

KEGG:

id description
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007822 True 3234 mRNA 0.39 3 31338716 31342706
TU33235 False 2140 lncRNA 0.36 3 31338845 31342792
TU33236 False 3191 lncRNA 0.40 3 31338845 31342792

Neighbor

gene id symbol gene type direction distance location
AMCG00007821 NA coding downstream 15635 31322734 ~ 31323081 (-)
AMCG00007814 NA coding downstream 194312 31136466 ~ 31144404 (-)
AMCG00007815 NA coding downstream 226978 31103778 ~ 31111738 (-)
AMCG00007812 rasgrf1,si:ch211-234p18.3,LOC107690363,LOC107709805 coding downstream 356696 30963044 ~ 30982020 (-)
AMCG00007811 dnaja4,LOC108229883,LOC107099226 coding downstream 390790 30944612 ~ 30947926 (-)
AMCG00007823 NA coding upstream 12568 31355360 ~ 31358391 (-)
AMCG00007824 NA coding upstream 87524 31430316 ~ 31446063 (-)
AMCG00007831 NA coding upstream 358544 31701336 ~ 31727439 (-)
AMCG00007836 det1 coding upstream 452903 31795695 ~ 31797044 (-)
AMCG00007843 NA coding upstream 1035643 32378435 ~ 32378904 (-)
G26416 NA non-coding downstream 434821 30903669 ~ 30903895 (-)
G26403 NA non-coding downstream 463338 30800411 ~ 30875378 (-)
G26370 NA non-coding downstream 727023 30610218 ~ 30611693 (-)
G26342 NA non-coding downstream 884088 30404998 ~ 30454628 (-)
G26598 NA non-coding upstream 342979 31685771 ~ 31686432 (-)
G26626 NA non-coding upstream 438846 31781638 ~ 31781891 (-)
G26646 NA non-coding upstream 479950 31822742 ~ 31822969 (-)
G26684 NA non-coding upstream 1070488 32413280 ~ 32417500 (-)
G26764 NA non-coding upstream 2249430 33592222 ~ 33640336 (-)
AMCG00007817 NA other downstream 92067 31192010 ~ 31246649 (-)
AMCG00007768 NA other downstream 2324769 29001049 ~ 29013947 (-)
AMCG00007757 tbc1d2b,LOC107757764,LOC107659498 other downstream 2417593 28894693 ~ 28921123 (-)
AMCG00007704 NA other downstream 3968197 27357731 ~ 27370519 (-)
AMCG00007687 LOC107703195,LOC107589318,LOC103130145 other downstream 5267868 26053764 ~ 26070848 (-)
AMCG00007835 LOC107594750 other upstream 462107 31804899 ~ 31816151 (-)
G26961 LOC101154678 other upstream 3526643 34869435 ~ 34869807 (-)
AMCG00007883 chrna7,LOC107756517,LOC108274439,LOC106560753,LOC108444230,LOC103033738,LOC107559430,LOC107748270,LOC107679711,LOC107694999 other upstream 4660401 36003193 ~ 36010995 (-)
AMCG00007907 NA other upstream 5499683 36842475 ~ 36846583 (-)
AMCG00007929 NA other upstream 5897292 37240084 ~ 37242983 (-)

Expression


Co-expression Network